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MacroAPE 1083:CNhs11716 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;291.84280011227116;400.4159753625849;373.812164375162;737.2397471667056!2;322.79741793479025;167.8445355103336;522.6944392187663;789.9742943...")
 
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06G5;0.192681!10534-107G3;0.39381!10429-106D6;0.147068!10464-106H5;0.484175!10827-111C8;0.645768!10789-110H6;0.662119!10828-111C9;0.201542!10788-110H5;0.439006!10792-110H9;0.259542!10765-110E9;0.633624!10829-111D1;0.58929!10830-111D2;0.43277!10831-111D3;0.404749!10832-111D4;0.385356!10833-111D5;0.346772!10764-110E8;0.366122!10770-110F5;0.204756!10399-106A3;0.237371!10400-106A4;0.39452!10405-106A9;0.466578!10834-111D6;0.463282!10835-111D7;0.423683!10836-111D8;0.733018!10837-111D9;0.80647!10699-109G6;0.835487!10802-111A1;0.276373!10796-110I4;0.310453!10010-101C1;0.135187!10810-111A9;0.0543159!10421-106C7;0.203531!10708-109H6;0.566348!12235-129G3;0.227527!12236-129G4;0.540355!12237-129G5;0.224733!10167-103B5;0.784483!10151-102I7;0.00663301!10428-106D5;0.00534021!10795-110I3;0.220524!10805-111A4;0.692266!10052-101G7;0.0586554!10189-103D9;0.0599183!10589-108D4;0.00249022!10425-106D2;0.328666!10427-106D4;0.450476!10702-109G9;0.33158!10432-106D9;0.783332!10496-107C1;0.018418!10718-109I7;0.161292!10011-101C2;0.465644!10053-101G8;0.0216831!10686-109F2;0.904554!10084-102B3;0.582861!10012-101C3;0.0132134!10085-102B4;0.00570274!10482-107A5;0.017597!10419-106C5;0.0559596!10080-102A8;0.132049!10760-110E4;0.164857!10709-109H7;0.110901!10710-109H8;0.0682224!10703-109H1;0.115926!10719-109I8;0.92512!10642-109A3;0.674368!10177-103C6;0.52086!10164-103B2;0.00555813!10173-103C2;0.00577936!10166-103B4;0.00277316!10083-102B2;0.00359966!10188-103D8;0.0123162!10552-107I3;0.01073!10553-107I4;0.0420125!10013-101C4;0.216527!10536-107G5;0.013606!10618-108G6;0.00189749!10423-106C9;0.0708106!10785-110H2;0.0423314!12238-129G6;0.00573036!12239-129G7;0.84719!12240-129G8;0.470093!10416-106C2;0.641766!10801-110I9;0.489347!10766-110F1;0.665896!10824-111C5;0.25283!10825-111C6;0.206511!10826-111C7;0.205411!10454-106G4;0.246014!10409-106B4;0.396054!10638-108I8;0.379602!10636-108I6;0.00336264!10513-107D9;0.000172833!10420-106C6;0.144902!10082-102B1;0.232297!10014-101C5;0.0221272!10070-101I7;0.00377337!10452-106G2;0.00376719!10453-106G3;0.63038!10449-106F8;0.91905!10042-101F6;0.994972!10069-101I6;0.00920252!10193-103E4;0.0599951!10631-108I1;0.00488608!10438-106E6;0.374212!10488-107B2;0.0711889!10196-103E7;0.136715!10071-101I8;0.0164986!10071-101I8;0.00562329!10041-101F5;0.00196796!10451-106G1;0.00141016!10450-106F9;0.0523263!10604-108F1;0.350467!10605-108F2;0.159736!10606-108F3;0.0513782!10603-108E9;0.137026!10497-107C2;0.179616!10448-106F7;0.000517537!10643-109A4;0.333887!10426-106D3;0.00201157!10431-106D8;0.14986!10197-103E8;0.0674757!10443-106F2;0.0496681!10815-111B5;0.890763!10816-111B6;0.0289656!10817-111B7;0.020284!10015-101C6;0.0257266!10410-106B5;0.0468671!10054-101G9;0.0261951!10758-110E2;0.0156193!10711-109H9;0.111673!10040-101F4;0.0425077!10470-106I2;0.00723032!10415-106C1;0.0609775!10198-103E9;0.000416376!10614-108G2;0.0357977!10612-108F9;0.0479233!10549-107H9;0.11479!10615-108G3;0.195482!10487-107B1;0.940072!10433-106E1;0.192971!10688-109F4;0.318338!10444-106F3;0.0174552!10444-106F3;0.622742!10485-107A8;0.635318!10413-106B8;0.0300427!10175-103C4;0.0063506!10161-103A8;0.00616937!12131-128D7;0.00780209!10624-108H3;0.396244!10712-109I1;0.198025!10205-103F7;0.811357!10206-103F8;0.0788374!10207-103F9;0.102963!10050-101G5;0.264211!10051-101G6;0.738873!10016-101C7;0.306239!10046-101G1;0.437988!10778-110G4;0.112033!10633-108I3;0.71729!10818-111B8;0.298974!10819-111B9;0.067038!10820-111C1;0.0682724!10484-107A7;0.0851878!10808-111A7;0.0659825!10169-103B7;0.349859!10153-102I9;0.00582028!13425-144D5;0.010875!13433-144E4;0.0890359!13437-144E8;0.0191892!11904-125F5;0.0317612!11905-125F6;0.462051!10039-101F3;0.230502!10791-110H8;0.00785183!10017-101C8;0.0945606!10045-101F9;0.0267221!10509-107D5;0.0323573!10839-111E2;0.0537982!10692-109F8;0.0882679!10079-102A7;0.00976229!10078-102A6;0.109441!10721-110A1;0.525658!10569-108B2;0.0369849!10570-108B3;0.644957!10571-108B4;0.751942!10647-109A8;0.991249!10752-110D5;0.00821629!10782-110G8;0.279198!10726-110A6;0.493679!10018-101C9;0.0200561!10086-102B5;0.668845!10182-103D2;0.587477!10165-103B3;0.00545181!10499-107C4;0.00668133!10408-106B3;0.0108471!10019-101D1;0.115191!10068-101I5;0.262929!10075-102A3;0.0725164!10077-102A5;0.142611!10727-110A7;0.262716!10775-110G1;0.18661!10412-106B7;0.281817!12231-129F8;0.968759!12232-129F9;0.299959!12233-129G1;0.0784885!12234-129G2;0.138467!10414-106B9;0.975063!10170-103B8;0.084499!10183-103D3;0.00670753!10150-102I6;0.00818867!10174-103C3;0.00730622!10155-103A2;0.00332437!10038-101F2;0.00482935!10838-111E1;0.00605057!10759-110E3;0.463653!10514-107E1;0.362548!10465-106H6;0.00301997!10691-109F7;0.00430938!10843-111E6;0.0790412!10844-111E7;0.810634!11747-123G1;0.0804324!11748-123G2;0.0355272!11749-123G3;0.00762775!11750-123G4;0.391308!11751-123G5;0.470532!11840-124H4;0.698825!11752-123G6;0.794786!11753-123G7;0.191641!11754-123G8;0.570222!11755-123G9;0.418455!11756-123H1;0.0108628!11833-124G6;0.166539!11760-123H5;0.0471829!11836-124G9;0.0560387!11758-123H3;0.629695!11835-124G8;0.599931!11762-123H7;0.986571!11838-124H2;0.236091!11757-123H2;0.873971!11759-123H4;0.776236!11761-123H6;0.217608!11842-124H6;0.118805!11837-124H1;0.540721!10568-108B1;0.890107!13230-141I8;0.162231!13231-141I9;0.186952!10696-109G3;0.274062!10493-107B7;0.074005!10494-107B8;0.00598377!10850-111F4;0.107832!10851-111F5;0.0787819!10852-111F6;0.0457003!10853-111F7;0.0739519!10854-111F8;0.0286308!10855-111F9;0.408248!10856-111G1;0.344384!10847-111F1;0.0670212!10846-111E9;0.493027!10848-111F2;0.0143204!10845-111E8;0.0750299!10857-111G2;0.00239992!10858-111G3;0.0821227!10156-103A3;0.0527977!11901-125F2;0.00583026!11902-125F3;0.446132!11903-125F4;0.237369!10689-109F5;0.222418!10648-109A9;0.000113164!10784-110H1;0.0140832!10744-110C6;0.163187!10772-110F7;0.587412!10474-106I6;0.426333!10600-108E6;0.670237!10684-109E9;0.0436059!12226-129F3;0.134391!12227-129F4;0.0358522!10508-107D4;0.0541918!10539-107G8;0.31835!10607-108F4;0.0949606!10555-107I6;0.369588!10774-110F9;0.308567!10637-108I7;0.227074!10663-109C6;0.964238!10728-110A8;0.919535!10729-110A9;0.143228!10430-106D7;0.854339!10730-110B1;0.106199!10813-111B3;0.752212!10812-111B2;0.716171!10037-101F1;0.383697!10172-103C1;0.00714593!10163-103B1;0.00982918!10076-102A4;0.00920022!10073-102A1;0.0112893!10036-101E9;0.00431392!10195-103E6;0.0152431!10277-104E7;0.00880392!10434-106E2;0.0453504!10550-107I1;0.108499!10545-107H5;0.119521!10544-107H4;0.0706725!10704-109H2;0.0108305!10510-107D6;0.837172!10558-107I9;0.340342!10020-101D2;0.884488!10732-110B3;0.0585038!10049-101G4;0.234735!10698-109G5;0.970025!10437-106E5;0.0620285!10417-106C3;0.00264741!10035-101E8;0.0941181!10171-103B9;0.00862117!10157-103A4;0.00805124!10034-101E7;0.0049007!10072-101I9;0.0115404!10199-103F1;0.00526668!10200-103F2;0.0128725!10697-109G4;0.0656162!10723-110A3;0.931647!10179-103C8;0.0409703!10160-103A7;0.0461061!10180-103C9;0.0445719!10162-103A9;0.0125403!10021-101D3;0.0122732!10840-111E3;0.139543!10706-109H4;0.295292!10033-101E6;0.447107!10032-101E5;0.00415732!10490-107B4;0.00969975!10439-106E7;0.00387629!10022-101D4;0.249629!10176-103C5;0.00862987!10469-106I1;0.00614912!10067-101I4;0.0809687!10411-106B6;0.00229952!10471-106I3;0.000713514!10030-101E3;0.0121312!10475-106I7;0.0106394!10787-110H4;0.252766!10477-106I9;0.888915!10695-109G2;0.91034!11771-123I7;0.600452!11772-123I8;0.238266!11773-123I9;0.482196!10093-102C3;0.634912!10442-106F1;0.0317421!10442-106F1;0.122075!10201-103F3;0.109763!10639-108I9;0.0193972!11843-124H7;0.000235645!11841-124H5;0.0866713!10693-109F9;0.0174119!10436-106E4;0.00016509!10483-107A6;0.432241!10282-104F3;0.0826543!10023-101D5;0.38364!10066-101I3;0.538235!10065-101I2;0.115487!10800-110I8;0.0196202!10610-108F7;0.265425!10841-111E4;0.544376!10541-107H1;0.122175!10842-111E5;0.20076!10562-108A4;0.409137!10024-101D6;0.211775!10064-101I1;0.00210105!10609-108F6;0.00306518!10048-101G3;0.187126!10781-110G7;0.0423961!10181-103D1;0.688241!10159-103A6;0.00296263!10056-101H2;0.00603572!10737-110B8;0.0012759!10025-101D7;0.824541!10044-101F8;0.0730857!10424-106D1;0.0516161!10463-106H4;0.227349!10616-108G4;0.0167053!10486-107A9;0.0894838!10062-101H8;0.0445146!10202-103F4;0.00669499!10158-103A5;0.0170529!10441-106E9;0.00927095!10031-101E4;0.439868!10063-101H9;0.0147367!10063-101H9;0.00407327!11763-123H8;0.00174019!11765-123I1;0.410312!11768-123I4;0.670338!10807-111A6;0.330443!10790-110H7;0.160392!10798-110I6;0.784481!10786-110H3;0.633947!10591-108D6;0.107502!10593-108D8;0.251538!10590-108D5;0.29552!10026-101D8;0.0818403!10096-102C6;0.0331083!10168-103B6;0.458652!10154-103A1;0.00327985!10209-103G2;0.00342727!10061-101H7;0.0910079!10027-101D9;0.0172466!10043-101F7;0.248683!10783-110G9;0.018874!10028-101E1;0.379439!10060-101H6;0.141707!10203-103F5;0.0363992!10059-101H5;0.208325!10047-101G2;0.26541!10029-101E2;0.0530229!10058-101H4;0.078621!10418-106C4;0.0211392!10492-107B6;0.304476!10694-109G1;0.0251671!10797-110I5;0.645971!10057-101H3;0.0923473!10100-102D1;0.0710157!10055-101H1;0.0484881!10204-103F6;0.00915516!10191-103E2;0.0623937!10563-108A5;0.025865
|name=CNhs11716_bu_f2
|name=CNhs11716_bu_f2
|tomtom_result=CEP3#MA0282.1;-1;0.0134837;6.41824;1;8;TTTTCAGAGAG;TTTCCGAG;-!Trl#MA0205.1;-2;0.0158166;7.52871;1;9;TTTTCAGAGAG;GAGAGAGCAA;-!z#MA0255.1;-2;0.0158166;7.52871;1;9;TTTTCAGAGAG;TTGAGTGATT;+!ARO80#MA0273.1;5;0.0197752;9.41301;1;11;TTTTCAGAGAG;ACATACTTGCCGAGAATTATC;-!YNR063W#MA0432.1;-3;0.0209831;9.98794;1;8;TTTTCAGAGAG;TCGGAGAT;+
}}
}}

Latest revision as of 13:30, 7 September 2012

Full Name: CNhs11716_bu_f2

Motif matrix
POACGT
1291.84280011227116400.4159753625849373.812164375162737.2397471667056
2322.79741793479025167.8445355103336522.6944392187663789.9742943528341
3161.68988916369722403.71726427313865546.580545391226691.3229881886624
4159.956545713529864.4293413148906682.2657777130461896.6590222752568
510.7494469927883871775.8743629187299.9349170326243666.751960072582489
61803.3106870167240.00.00.0
74.6289978375037732.25369326921588131793.71659802041812.7113978895865163
81217.539098538698218.69138405454833241.44213411933328325.6380703041449
9265.6624636788686274.275710919036041203.559706402043559.812806016776825
10747.6159389589815391.3394622156412261.1350457129883403.22024012911345
11478.9466051918005160.06906398509884816.566112551664347.7289052881605

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

CEP3#MA0282.1-10.01348376.4182418TTTTCAGAGAGTTTCCGAG-
Trl#MA0205.1-20.01581667.5287119TTTTCAGAGAGGAGAGAGCAA-
z#MA0255.1-20.01581667.5287119TTTTCAGAGAGTTGAGTGATT+
ARO80#MA0273.150.01977529.41301111TTTTCAGAGAGACATACTTGCCGAGAATTATC-
YNR063W#MA0432.1-30.02098319.9879418TTTTCAGAGAGTCGGAGAT+