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MacroAPE 1083:CNhs12098 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;138.56714320449043;74.1625559477184;108.70292512183858;310.1376669176551!2;256.2948255104111;124.3252072894266;198.97503682770818;51.9752215...")
 
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0494-107B8;0.10093!10850-111F4;0.276035!10851-111F5;0.263646!10852-111F6;0.222093!10853-111F7;0.185383!10854-111F8;0.305447!10855-111F9;0.762426!10856-111G1;0.756825!10847-111F1;0.107189!10846-111E9;0.244615!10848-111F2;0.151943!10845-111E8;0.293395!10857-111G2;0.169198!10858-111G3;0.382751!10156-103A3;0.0666558!11901-125F2;0.122255!11902-125F3;0.88492!11903-125F4;0.99709!10689-109F5;0.95988!10648-109A9;0.176918!10784-110H1;0.0139606!10744-110C6;0.0938108!10772-110F7;0.567054!10474-106I6;0.208201!10600-108E6;0.309909!10684-109E9;0.444654!12226-129F3;0.086516!12227-129F4;0.58659!10508-107D4;0.548144!10539-107G8;0.278941!10607-108F4;0.962124!10555-107I6;0.0386894!10774-110F9;0.288344!10637-108I7;0.127888!10663-109C6;0.120939!10728-110A8;0.025178!10729-110A9;0.0345339!10430-106D7;0.575453!10730-110B1;0.244736!10813-111B3;0.485753!10812-111B2;0.800199!10037-101F1;0.941765!10172-103C1;0.157571!10163-103B1;0.104171!10076-102A4;0.10601!10073-102A1;0.143756!10036-101E9;0.916551!10195-103E6;0.176124!10277-104E7;0.122878!10434-106E2;0.0777515!10550-107I1;0.824765!10545-107H5;0.14148!10544-107H4;0.564321!10704-109H2;0.154539!10510-107D6;0.958943!10558-107I9;0.0129263!10020-101D2;0.0390713!10732-110B3;0.438646!10049-101G4;0.213078!10698-109G5;0.967219!10437-106E5;0.213794!10417-106C3;0.397131!10035-101E8;0.37279!10171-103B9;0.159724!10157-103A4;0.121627!10034-101E7;0.0943804!10072-101I9;0.168152!10199-103F1;0.969896!10200-103F2;0.443658!10697-109G4;0.154648!10723-110A3;0.148079!10179-103C8;0.0435496!10160-103A7;0.0754651!10180-103C9;0.0222521!10162-103A9;0.149453!10021-101D3;0.281552!10840-111E3;0.905785!10706-109H4;0.244289!10033-101E6;0.162416!10032-101E5;0.193278!10490-107B4;0.150004!10439-106E7;0.203157!10022-101D4;0.0137581!10176-103C5;0.379917!10469-106I1;0.12637!10067-101I4;0.0447486!10411-106B6;0.455086!10471-106I3;0.193627!10030-101E3;0.0437075!10475-106I7;0.254762!10787-110H4;0.507225!10477-106I9;0.486439!10695-109G2;0.228653!11771-123I7;0.875094!11772-123I8;0.86741!11773-123I9;0.645106!10093-102C3;0.652536!10442-106F1;0.318961!10442-106F1;0.475465!10201-103F3;0.519695!10639-108I9;0.327729!11843-124H7;0.0277488!11841-124H5;0.0733807!10693-109F9;0.399779!10436-106E4;0.131216!10483-107A6;0.25466!10282-104F3;0.17474!10023-101D5;0.0409412!10066-101I3;0.125405!10065-101I2;0.281043!10800-110I8;0.205839!10610-108F7;0.0479606!10841-111E4;0.360493!10541-107H1;0.297922!10842-111E5;0.132355!10562-108A4;0.253385!10024-101D6;0.0369687!10064-101I1;0.185014!10609-108F6;0.397846!10048-101G3;0.431807!10781-110G7;0.306459!10181-103D1;0.268335!10159-103A6;0.182532!10056-101H2;0.0780279!10737-110B8;0.478084!10025-101D7;0.57438!10044-101F8;0.611449!10424-106D1;0.594671!10463-106H4;0.619698!10616-108G4;0.094176!10486-107A9;0.941321!10062-101H8;0.368419!10202-103F4;0.942716!10158-103A5;0.260613!10441-106E9;0.0680634!10031-101E4;0.0533846!10063-101H9;0.171803!10063-101H9;0.964536!11763-123H8;0.194544!11765-123I1;0.338446!11768-123I4;0.342692!10807-111A6;0.368489!10790-110H7;0.0568052!10798-110I6;0.263015!10786-110H3;0.390158!10591-108D6;0.0955732!10593-108D8;0.385718!10590-108D5;0.201807!10026-101D8;0.296977!10096-102C6;0.478023!10168-103B6;0.229742!10154-103A1;0.208057!10209-103G2;0.0792208!10061-101H7;0.151292!10027-101D9;0.336672!10043-101F7;0.439852!10783-110G9;0.183011!10028-101E1;0.274373!10060-101H6;0.426268!10203-103F5;0.437915!10059-101H5;0.128014!10047-101G2;0.19735!10029-101E2;0.0874597!10058-101H4;0.24658!10418-106C4;0.282831!10492-107B6;0.0983136!10694-109G1;0.104589!10797-110I5;0.716234!10057-101H3;0.015966!10100-102D1;0.311063!10055-101H1;0.357099!10204-103F6;0.583693!10191-103E2;0.411271!10563-108A5;0.152632
|name=CNhs12098_bu_f2
|name=CNhs12098_bu_f2
|tomtom_result=GAL4#MA0299.1;3;0.00324627;1.54523;1;11;TACACAGGCTT;CGGGGAACAGTACTC;+!Zfx#MA0146.1;-4;0.0136058;6.47637;1;7;TACACAGGCTT;CAGGCCTCGGCCCC;-!RUNX1#MA0002.2;2;0.0146772;6.98634;1;9;TACACAGGCTT;AAACCACAGAC;-!ESR1#MA0112.2;9;0.0155351;7.39471;1;11;TACACAGGCTT;AGGTCAGGGTGACCTGGGCC;-!SWI5#MA0402.1;-1;0.0181007;8.61592;1;8;TACACAGGCTT;AACCAGCA;-
}}
}}

Latest revision as of 13:42, 7 September 2012

Full Name: CNhs12098_bu_f2

Motif matrix
POACGT
1138.5671432044904374.1625559477184108.70292512183858310.1376669176551
2256.2948255104111124.3252072894266198.9750368277081851.975221564156506
3281.0823164798756312.189145857199328.347104449715669.951724404912296
4290.3115818729858187.0811829275157848.79349410384948105.3840322873514
51.6934523723958508625.38804311973172.79534332717927871.6934523723958508
6629.02316343373490.223047503483238570.35480032007858281.9692799344058456
77.6649280506664629.544313821215209611.32639893023573.034650389585292
8178.1422844898505137.01725204884696293.476296653683222.934457999321747
991.47391685998264369.6023348477055126.0545327857145844.43950669830016
1049.20234329432145219.86976480243268121.07766305517139241.42052003977696
1186.79173041654343167.3387695837052190.35355771815446287.0862334732993

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GAL4#MA0299.130.003246271.54523111TACACAGGCTTCGGGGAACAGTACTC+
Zfx#MA0146.1-40.01360586.4763717TACACAGGCTTCAGGCCTCGGCCCC-
RUNX1#MA0002.220.01467726.9863419TACACAGGCTTAAACCACAGAC-
ESR1#MA0112.290.01553517.39471111TACACAGGCTTAGGTCAGGGTGACCTGGGCC-
SWI5#MA0402.1-10.01810078.6159218TACACAGGCTTAACCAGCA-
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