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MacroAPE 1083:CAATGATGG,motif925: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;66.599;467.415;42.77;34.216!2;505.908;29.328;47.658;28.106!3;446.03;68.432;27.495;69.043!4;39.715;31.161;21.996;518.128!5;32.994;69.654;445....")
 
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5!10828-111C9;0.978687!10788-110H5;0.641044!10792-110H9;0.926416!10765-110E9;0.68205!10829-111D1;0.980201!10830-111D2;0.587584!10831-111D3;0.427138!10832-111D4;0.578999!10833-111D5;0.990372!10764-110E8;0.785413!10770-110F5;0.873027!10399-106A3;0.654879!10400-106A4;0.985746!10405-106A9;0.975486!10834-111D6;0.970627!10835-111D7;0.482476!10836-111D8;0.706509!10837-111D9;0.595248!10699-109G6;0.78332!10802-111A1;0.83651!10796-110I4;0.893468!10010-101C1;0.480589!10810-111A9;0.111972!10421-106C7;0.335752!10708-109H6;0.62942!12235-129G3;0.39597!12236-129G4;0.247358!12237-129G5;0.695444!10167-103B5;0.400485!10151-102I7;0.773805!10428-106D5;0.678974!10795-110I3;0.302307!10805-111A4;0.92434!10052-101G7;0.528158!10189-103D9;0.407502!10589-108D4;0.0830786!10425-106D2;0.72122!10427-106D4;0.55681!10702-109G9;0.961095!10432-106D9;0.834291!10496-107C1;0.672377!10718-109I7;0.800347!10011-101C2;0.673671!10053-101G8;0.168374!10686-109F2;0.213431!10084-102B3;0.620658!10012-101C3;0.91202!10085-102B4;0.658036!10482-107A5;0.922606!10419-106C5;0.240931!10080-102A8;0.450312!10760-110E4;0.170013!10709-109H7;0.816215!10710-109H8;0.536472!10703-109H1;0.684856!10719-109I8;0.340217!10642-109A3;0.52465!10177-103C6;0.200071!10164-103B2;0.829688!10173-103C2;0.693244!10166-103B4;0.480456!10083-102B2;0.541452!10188-103D8;0.595281!10552-107I3;0.712157!10553-107I4;0.65296!10013-101C4;0.741737!10536-107G5;0.287143!10618-108G6;0.7458!10423-106C9;0.922408!10785-110H2;0.865305!12238-129G6;0.715485!12239-129G7;0.103021!12240-129G8;0.768661!10416-106C2;0.0672918!10801-110I9;0.867617!10766-110F1;0.834015!10824-111C5;0.770562!10825-111C6;0.370689!10826-111C7;0.520827!10454-106G4;0.404586!10409-106B4;0.430155!10638-108I8;0.93613!10636-108I6;0.525997!10513-107D9;0.799156!10420-106C6;0.714646!10082-102B1;0.155346!10014-101C5;0.402337!10070-101I7;0.200687!10452-106G2;0.416363!10453-106G3;0.111266!10449-106F8;0.0978709!10042-101F6;0.130514!10069-101I6;0.688295!10193-103E4;0.45035!10631-108I1;0.761186!10438-106E6;0.635837!10488-107B2;0.727012!10196-103E7;0.325434!10071-101I8;0.724554!10071-101I8;0.43088!10041-101F5;0.560496!10451-106G1;0.220691!10450-106F9;0.16571!10604-108F1;0.0700724!10605-108F2;0.748247!10606-108F3;0.625759!10603-108E9;0.986421!10497-107C2;0.629864!10448-106F7;0.38127!10643-109A4;0.697639!10426-106D3;0.85303!10431-106D8;0.353091!10197-103E8;0.779101!10443-106F2;0.423532!10815-111B5;0.69702!10816-111B6;0.94194!10817-111B7;0.854765!10015-101C6;0.927066!10410-106B5;0.194602!10054-101G9;0.215204!10758-110E2;0.787767!10711-109H9;0.745291!10040-101F4;0.818225!10470-106I2;0.755026!10415-106C1;0.402423!10198-103E9;0.506214!10614-108G2;0.327029!10612-108F9;0.722221!10549-107H9;0.740836!10615-108G3;0.169571!10487-107B1;0.276833!10433-106E1;0.587623!10688-109F4;0.959045!10444-106F3;0.529572!10444-106F3;0.832702!10485-107A8;0.791176!10413-106B8;0.260554!10175-103C4;0.115255!10161-103A8;0.981273!12131-128D7;0.739273!10624-108H3;0.807934!10712-109I1;0.652542!10205-103F7;0.698639!10206-103F8;0.359182!10207-103F9;0.254926!10050-101G5;0.11116!10051-101G6;0.252726!10016-101C7;0.362358!10046-101G1;0.111923!10778-110G4;0.319946!10633-108I3;0.609316!10818-111B8;0.478149!10819-111B9;0.367333!10820-111C1;0.344425!10484-107A7;0.414862!10808-111A7;0.589244!10169-103B7;0.817189!10153-102I9;0.788654!13425-144D5;0.768299!13433-144E4;0.450068!13437-144E8;0.263417!11904-125F5;0.191701!11905-125F6;0.625721!10039-101F3;0.686186!10791-110H8;0.763747!10017-101C8;0.773468!10045-101F9;0.361139!10509-107D5;0.930107!10839-111E2;0.40169!10692-109F8;0.723287!10079-102A7;0.724068!10078-102A6;0.262625!10721-110A1;0.173018!10569-108B2;0.690864!10570-108B3;0.88448!10571-108B4;0.635331!10647-109A8;0.369656!10752-110D5;0.341275!10782-110G8;0.427813!10726-110A6;0.19831!10018-101C9;0.802582!10086-102B5;0.0826523!10182-103D2;0.351818!10165-103B3;0.91022!10499-107C4;0.927469!10408-106B3;0.964382!10019-101D1;0.162542!10068-101I5;0.121768!10075-102A3;0.260375!10077-102A5;0.164646!10727-110A7;0.0886901!10775-110G1;0.763092!10412-106B7;0.715413!12231-129F8;0.929244!12232-129F9;0.135901!12233-129G1;0.146307!12234-129G2;0.0486321!10414-106B9;0.103406!10170-103B8;0.424122!10183-103D3;0.852755!10150-102I6;0.967408!10174-103C3;0.824727!10155-103A2;0.763486!10038-101F2;0.722733!10838-111E1;0.732048!10759-110E3;0.21344!10514-107E1;0.819485!10465-106H6;0.205325!10691-109F7;0.02715!10843-111E6;0.641071!10844-111E7;0.393589!11747-123G1;0.051297!11748-123G2;0.129084!11749-123G3;0.305527!11750-123G4;0.961926!11751-123G5;0.415766!11840-124H4;0.708368!11752-123G6;0.45187!11753-123G7;0.963363!11754-123G8;0.745647!11755-123G9;0.590345!11756-123H1;0.912134!11833-124G6;0.700664!11760-123H5;0.383079!11836-124G9;0.685798!11758-123H3;0.792061!11835-124G8;0.242867!11762-123H7;0.212743!11838-124H2;0.900906!11757-123H2;0.981006!11759-123H4;0.282568!11761-123H6;0.181477!11842-124H6;0.558199!11837-124H1;0.754554!10568-108B1;0.223634!13230-141I8;0.104545!13231-141I9;0.420668!10696-109G3;0.464157!10493-107B7;0.800336!10494-107B8;0.984633!10850-111F4;0.33045!10851-111F5;0.489559!10852-111F6;0.831116!10853-111F7;0.791239!10854-111F8;0.251576!10855-111F9;0.921731!10856-111G1;0.185439!10847-111F1;0.37047!10846-111E9;0.874038!10848-111F2;0.692969!10845-111E8;0.469285!10857-111G2;0.640422!10858-111G3;0.839096!10156-103A3;0.99358!11901-125F2;0.829746!11902-125F3;0.996601!11903-125F4;0.79309!10689-109F5;0.492165!10648-109A9;0.14173!10784-110H1;0.343361!10744-110C6;0.534715!10772-110F7;0.678577!10474-106I6;0.689657!10600-108E6;0.620682!10684-109E9;0.991076!12226-129F3;0.766605!12227-129F4;0.379385!10508-107D4;0.899475!10539-107G8;0.113975!10607-108F4;0.0872729!10555-107I6;0.345691!10774-110F9;0.0417535!10637-108I7;0.769265!10663-109C6;0.8007!10728-110A8;0.96717!10729-110A9;0.716523!10430-106D7;0.844705!10730-110B1;0.807576!10813-111B3;0.193551!10812-111B2;0.791315!10037-101F1;0.403422!10172-103C1;0.676461!10163-103B1;0.97574!10076-102A4;0.748118!10073-102A1;0.960647!10036-101E9;0.705901!10195-103E6;0.795299!10277-104E7;0.786948!10434-106E2;0.575071!10550-107I1;0.772089!10545-107H5;0.335132!10544-107H4;0.982066!10704-109H2;0.906011!10510-107D6;0.423921!10558-107I9;0.208481!10020-101D2;0.213483!10732-110B3;0.136888!10049-101G4;0.0086358!10698-109G5;0.669489!10437-106E5;0.786983!10417-106C3;0.968203!10035-101E8;0.769111!10171-103B9;0.798236!10157-103A4;0.834957!10034-101E7;0.819594!10072-101I9;0.77617!10199-103F1;0.684805!10200-103F2;0.391078!10697-109G4;0.431154!10723-110A3;0.592895!10179-103C8;0.29639!10160-103A7;0.601951!10180-103C9;0.897353!10162-103A9;0.885349!10021-101D3;0.457258!10840-111E3;0.205202!10706-109H4;0.931498!10033-101E6;0.55362!10032-101E5;0.954968!10490-107B4;0.935858!10439-106E7;0.765479!10022-101D4;0.685063!10176-103C5;0.144366!10469-106I1;0.828887!10067-101I4;0.224172!10411-106B6;0.921049!10471-106I3;0.774395!10030-101E3;0.906785!10475-106I7;0.494977!10787-110H4;0.368052!10477-106I9;0.151354!10695-109G2;0.369027!11771-123I7;0.826743!11772-123I8;0.385685!11773-123I9;0.826699!10093-102C3;0.520743!10442-106F1;0.240186!10442-106F1;0.478549!10201-103F3;0.640404!10639-108I9;0.997302!11843-124H7;0.789988!11841-124H5;0.572583!10693-109F9;0.546756!10436-106E4;0.622726!10483-107A6;0.851338!10282-104F3;0.71094!10023-101D5;0.985282!10066-101I3;0.486775!10065-101I2;0.756924!10800-110I8;0.568759!10610-108F7;0.152299!10841-111E4;0.494492!10541-107H1;0.165376!10842-111E5;0.110881!10562-108A4;0.155403!10024-101D6;0.253212!10064-101I1;0.24139!10609-108F6;0.798069!10048-101G3;0.318256!10781-110G7;0.188236!10181-103D1;0.0698489!10159-103A6;0.817401!10056-101H2;0.464035!10737-110B8;0.698053!10025-101D7;0.462188!10044-101F8;0.136038!10424-106D1;0.243619!10463-106H4;0.815157!10616-108G4;0.846777!10486-107A9;0.425103!10062-101H8;0.561897!10202-103F4;0.363997!10158-103A5;0.287547!10441-106E9;0.656298!10031-101E4;0.210298!10063-101H9;0.807879!10063-101H9;0.614197!11763-123H8;0.649574!11765-123I1;0.446364!11768-123I4;0.888414!10807-111A6;0.599184!10790-110H7;0.310357!10798-110I6;0.318107!10786-110H3;0.434206!10591-108D6;0.530697!10593-108D8;0.572602!10590-108D5;0.833298!10026-101D8;0.179611!10096-102C6;0.0561965!10168-103B6;0.240953!10154-103A1;0.983045!10209-103G2;0.789246!10061-101H7;0.345276!10027-101D9;0.453369!10043-101F7;0.218661!10783-110G9;0.101041!10028-101E1;0.842229!10060-101H6;0.1865!10203-103F5;0.598251!10059-101H5;0.305765!10047-101G2;0.382315!10029-101E2;0.0721609!10058-101H4;0.0997299!10418-106C4;0.472201!10492-107B6;0.723099!10694-109G1;0.905571!10797-110I5;0.307253!10057-101H3;0.854036!10100-102D1;0.412032!10055-101H1;0.184492!10204-103F6;0.5077!10191-103E2;0.210899!10563-108A5;0.123306
|name=CAATGATGG,motif925,CNhs11923,T:611.0(22.85%),B:10770.1(14.86%),P:1e-27
|name=CAATGATGG,motif925,CNhs11923,T:611.0(22.85%),B:10770.1(14.86%),P:1e-27
|tomtom_result=Gata1#MA0035.1;-3;0.00703922;3.35067;1;6;CAATGATGG;GGATGG;+!YY1#MA0095.1;-4;0.00860375;4.09539;1;5;CAATGATGG;GATGGC;-!ATHB-5#MA0110.1;-1;0.00911331;4.33793;1;8;CAATGATGG;AATAATTGG;-!HAT5#MA0008.1;-1;0.00970515;4.61965;1;8;CAATGATGG;AATAATTG;-!Sox17#MA0078.1;2;0.012874;6.12803;1;7;CAATGATGG;GACAATGAG;-!squamosa#MA0082.1;1;0.0142706;6.7928;1;9;CAATGATGG;CCAAAAATGGAAAT;+!FZF1#MA0298.1;-3;0.0166512;7.92598;1;6;CAATGATGG;TGATAG;-!YHP1#MA0426.1;0;0.0166512;7.92598;1;6;CAATGATGG;CAATTA;-!AGL3#MA0001.1;1;0.0168217;8.00712;1;9;CAATGATGG;CCATAAATAG;+!PBX1#MA0070.1;3;0.01753;8.34426;1;9;CAATGATGG;TTTGATTGATGG;-!Pax5#MA0014.1;4;0.0195283;9.29545;1;9;CAATGATGG;GGAGCACTGAAGCGTAACCG;+!Nkx2-5#MA0063.1;0;0.0198552;9.4511;1;7;CAATGATGG;CAATTAA;-!B-H2#MA0169.1;0;0.0205925;9.80205;1;7;CAATGATGG;CAATTAA;-
}}
}}

Latest revision as of 13:46, 7 September 2012

Full Name: CAATGATGG,motif925,CNhs11923,T:611.0(22.85%),B:10770.1(14.86%),P:1e-27

Motif matrix
POACGT
166.599467.41542.7734.216
2505.90829.32847.65828.106
3446.0368.43227.49569.043
439.71531.16121.996518.128
532.99469.654445.41962.933
6470.4729.32876.37534.827
769.65440.32657.434443.586
828.71747.658493.07741.548
943.38142.77490.63334.216

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Gata1#MA0035.1-30.007039223.3506716CAATGATGGGGATGG+
YY1#MA0095.1-40.008603754.0953915CAATGATGGGATGGC-
ATHB-5#MA0110.1-10.009113314.3379318CAATGATGGAATAATTGG-
HAT5#MA0008.1-10.009705154.6196518CAATGATGGAATAATTG-
Sox17#MA0078.120.0128746.1280317CAATGATGGGACAATGAG-
squamosa#MA0082.110.01427066.792819CAATGATGGCCAAAAATGGAAAT+
FZF1#MA0298.1-30.01665127.9259816CAATGATGGTGATAG-
YHP1#MA0426.100.01665127.9259816CAATGATGGCAATTA-
AGL3#MA0001.110.01682178.0071219CAATGATGGCCATAAATAG+
PBX1#MA0070.130.017538.3442619CAATGATGGTTTGATTGATGG-
Pax5#MA0014.140.01952839.2954519CAATGATGGGGAGCACTGAAGCGTAACCG+
Nkx2-5#MA0063.100.01985529.451117CAATGATGGCAATTAA-
B-H2#MA0169.100.02059259.8020517CAATGATGGCAATTAA-
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