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MacroAPE 1083:CNhs12001 bu f0: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;123.7944023727356;3589.0242476594367;211.71838887252335;1568.6501697965937!2;145.84607602500907;4060.8749224026;42.194057209771884;1244.2721...")
 
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;0.114032!10429-106D6;0.017473!10464-106H5;0.133108!10827-111C8;0.0973809!10789-110H6;0.737455!10828-111C9;0.588535!10788-110H5;0.434763!10792-110H9;0.233892!10765-110E9;0.456456!10829-111D1;0.357949!10830-111D2;0.212119!10831-111D3;0.677159!10832-111D4;0.86345!10833-111D5;0.183183!10764-110E8;0.238549!10770-110F5;0.281958!10399-106A3;0.641221!10400-106A4;0.0945709!10405-106A9;0.129065!10834-111D6;0.125631!10835-111D7;0.632416!10836-111D8;0.0353901!10837-111D9;0.0303262!10699-109G6;0.122618!10802-111A1;0.69964!10796-110I4;0.148552!10010-101C1;0.00912656!10810-111A9;0.0947321!10421-106C7;0.00327307!10708-109H6;0.417403!12235-129G3;0.028899!12236-129G4;0.159498!12237-129G5;0.103637!10167-103B5;0.0155611!10151-102I7;0.125784!10428-106D5;0.0300868!10795-110I3;0.74586!10805-111A4;0.179264!10052-101G7;0.000624688!10189-103D9;0.0865444!10589-108D4;0.000721861!10425-106D2;0.00549864!10427-106D4;0.711992!10702-109G9;0.478557!10432-106D9;0.559047!10496-107C1;0.0665962!10718-109I7;0.20212!10011-101C2;0.214721!10053-101G8;0.0188197!10686-109F2;0.0989932!10084-102B3;0.705745!10012-101C3;0.0645434!10085-102B4;0.0442565!10482-107A5;0.183147!10419-106C5;0.0705658!10080-102A8;0.0843099!10760-110E4;0.271883!10709-109H7;0.00241696!10710-109H8;0.00806758!10703-109H1;0.0133643!10719-109I8;0.0515104!10642-109A3;0.0132999!10177-103C6;0.206554!10164-103B2;0.128987!10173-103C2;0.0831152!10166-103B4;0.499702!10083-102B2;0.294506!10188-103D8;0.341382!10552-107I3;0.0745033!10553-107I4;0.000224575!10013-101C4;0.0302274!10536-107G5;0.0522236!10618-108G6;0.0442506!10423-106C9;0.00265429!10785-110H2;0.0105404!12238-129G6;0.000952677!12239-129G7;0.91438!12240-129G8;0.844656!10416-106C2;0.615252!10801-110I9;0.536659!10766-110F1;0.64561!10824-111C5;0.432195!10825-111C6;0.000698261!10826-111C7;0.000523748!10454-106G4;0.00201145!10409-106B4;0.00099838!10638-108I8;0.0965656!10636-108I6;0.0364875!10513-107D9;0.00607923!10420-106C6;0.000628574!10082-102B1;0.0353364!10014-101C5;0.0832477!10070-101I7;0.0270394!10452-106G2;0.0454096!10453-106G3;0.350467!10449-106F8;0.515412!10042-101F6;0.525717!10069-101I6;0.0188564!10193-103E4;0.342248!10631-108I1;0.0935615!10438-106E6;0.087131!10488-107B2;0.03431!10196-103E7;1.65204e-05!10071-101I8;0.151408!10071-101I8;0.0474898!10041-101F5;0.191515!10451-106G1;0.00215182!10450-106F9;0.00898981!10604-108F1;0.0146498!10605-108F2;0.111406!10606-108F3;0.0226745!10603-108E9;0.260208!10497-107C2;0.0771661!10448-106F7;0.169896!10643-109A4;0.0762331!10426-106D3;0.0994121!10431-106D8;0.004618!10197-103E8;0.000497108!10443-106F2;0.323345!10815-111B5;0.0663408!10816-111B6;0.00125349!10817-111B7;0.00294651!10015-101C6;0.00108413!10410-106B5;0.0597401!10054-101G9;0.00726946!10758-110E2;0.238642!10711-109H9;0.722252!10040-101F4;0.0671992!10470-106I2;0.0660567!10415-106C1;0.00217517!10198-103E9;0.361634!10614-108G2;0.0270937!10612-108F9;0.121877!10549-107H9;0.00258458!10615-108G3;0.02414!10487-107B1;0.026671!10433-106E1;0.0100041!10688-109F4;0.123403!10444-106F3;0.137125!10444-106F3;0.258081!10485-107A8;0.273251!10413-106B8;0.156866!10175-103C4;0.0288708!10161-103A8;0.103435!12131-128D7;0.0157423!10624-108H3;0.549206!10712-109I1;0.203472!10205-103F7;0.506724!10206-103F8;0.159946!10207-103F9;0.20043!10050-101G5;0.0493959!10051-101G6;0.657632!10016-101C7;0.262279!10046-101G1;0.0655937!10778-110G4;0.134041!10633-108I3;0.264562!10818-111B8;0.0154485!10819-111B9;7.78661e-05!10820-111C1;5.20551e-05!10484-107A7;7.91299e-05!10808-111A7;0.131101!10169-103B7;0.302422!10153-102I9;0.07184!13425-144D5;0.026596!13433-144E4;0.00277414!13437-144E8;0.00562081!11904-125F5;0.00103765!11905-125F6;0.793782!10039-101F3;0.84961!10791-110H8;0.0595521!10017-101C8;0.00352709!10045-101F9;0.220371!10509-107D5;0.19712!10839-111E2;0.158024!10692-109F8;0.0252327!10079-102A7;0.0365741!10078-102A6;0.0842864!10721-110A1;0.258576!10569-108B2;0.000646893!10570-108B3;0.273914!10571-108B4;0.347111!10647-109A8;0.306105!10752-110D5;0.152535!10782-110G8;0.0707753!10726-110A6;0.989828!10018-101C9;0.894234!10086-102B5;0.374907!10182-103D2;0.506272!10165-103B3;0.0582206!10499-107C4;0.0330327!10408-106B3;0.135941!10019-101D1;0.0217653!10068-101I5;0.00380478!10075-102A3;0.0149291!10077-102A5;0.00236341!10727-110A7;0.00168911!10775-110G1;0.176838!10412-106B7;0.314537!12231-129F8;0.308085!12232-129F9;0.792313!12233-129G1;0.640453!12234-129G2;0.783273!10414-106B9;0.418523!10170-103B8;0.0702996!10183-103D3;0.159469!10150-102I6;0.0948247!10174-103C3;0.0440163!10155-103A2;0.146944!10038-101F2;0.0221995!10838-111E1;0.0222714!10759-110E3;0.0761441!10514-107E1;0.20697!10465-106H6;0.165011!10691-109F7;0.03754!10843-111E6;0.819372!10844-111E7;0.0434906!11747-123G1;0.0861056!11748-123G2;0.559244!11749-123G3;0.596992!11750-123G4;0.641219!11751-123G5;0.923005!11840-124H4;0.829844!11752-123G6;0.969753!11753-123G7;0.710533!11754-123G8;0.647616!11755-123G9;0.651488!11756-123H1;0.627697!11833-124G6;0.547687!11760-123H5;0.860403!11836-124G9;0.383825!11758-123H3;0.586597!11835-124G8;0.62516!11762-123H7;0.243014!11838-124H2;0.998471!11757-123H2;0.449041!11759-123H4;0.795536!11761-123H6;0.716213!11842-124H6;0.237526!11837-124H1;0.774922!10568-108B1;0.331209!13230-141I8;0.0253119!13231-141I9;0.468207!10696-109G3;0.550922!10493-107B7;0.750405!10494-107B8;0.00138672!10850-111F4;0.0644475!10851-111F5;0.00571215!10852-111F6;0.0758561!10853-111F7;0.0698613!10854-111F8;0.00855732!10855-111F9;0.00774256!10856-111G1;0.809505!10847-111F1;0.30557!10846-111E9;0.448412!10848-111F2;0.214389!10845-111E8;0.0221199!10857-111G2;0.11435!10858-111G3;0.000943939!10156-103A3;0.0843011!11901-125F2;0.0355312!11902-125F3;0.705157!11903-125F4;0.617158!10689-109F5;0.858608!10648-109A9;0.000485207!10784-110H1;0.00127661!10744-110C6;0.127281!10772-110F7;0.763024!10474-106I6;0.35983!10600-108E6;0.451177!10684-109E9;0.0242987!12226-129F3;0.00794162!12227-129F4;6.64435e-05!10508-107D4;0.748073!10539-107G8;0.534854!10607-108F4;0.469089!10555-107I6;0.00376077!10774-110F9;0.187989!10637-108I7;2.15998e-06!10663-109C6;0.0117349!10728-110A8;0.00125323!10729-110A9;0.0045055!10430-106D7;0.640368!10730-110B1;0.0348768!10813-111B3;0.173081!10812-111B2;0.705052!10037-101F1;0.703449!10172-103C1;0.0607329!10163-103B1;0.159625!10076-102A4;0.0391684!10073-102A1;0.0894992!10036-101E9;0.28328!10195-103E6;0.0788818!10277-104E7;0.0671513!10434-106E2;0.160517!10550-107I1;0.0108371!10545-107H5;0.0100634!10544-107H4;0.0014559!10704-109H2;0.0381567!10510-107D6;0.70855!10558-107I9;0.884719!10020-101D2;0.169085!10732-110B3;0.111932!10049-101G4;0.0362231!10698-109G5;0.887367!10437-106E5;0.011043!10417-106C3;0.0955944!10035-101E8;0.23246!10171-103B9;0.0750075!10157-103A4;0.134132!10034-101E7;0.0536817!10072-101I9;0.0674728!10199-103F1;0.318622!10200-103F2;0.129566!10697-109G4;0.150238!10723-110A3;0.00394425!10179-103C8;0.0852175!10160-103A7;0.153886!10180-103C9;0.176306!10162-103A9;0.930111!10021-101D3;0.449606!10840-111E3;0.390214!10706-109H4;0.268308!10033-101E6;0.334416!10032-101E5;0.0644277!10490-107B4;0.0820596!10439-106E7;0.000221828!10022-101D4;0.0173082!10176-103C5;0.073634!10469-106I1;0.129568!10067-101I4;0.00256375!10411-106B6;0.158352!10471-106I3;0.381764!10030-101E3;0.00641712!10475-106I7;0.0807583!10787-110H4;0.0169265!10477-106I9;0.0364594!10695-109G2;0.0619852!11771-123I7;0.344623!11772-123I8;0.00944987!11773-123I9;0.0108598!10093-102C3;0.401254!10442-106F1;0.0510191!10442-106F1;0.0152427!10201-103F3;0.0294397!10639-108I9;0.120125!11843-124H7;0.486581!11841-124H5;0.0249157!10693-109F9;0.00899636!10436-106E4;0.000163097!10483-107A6;0.00422051!10282-104F3;0.00813077!10023-101D5;0.679834!10066-101I3;0.671091!10065-101I2;0.634238!10800-110I8;0.3516!10610-108F7;0.120333!10841-111E4;0.261948!10541-107H1;0.0020013!10842-111E5;0.0548469!10562-108A4;0.0778092!10024-101D6;0.266828!10064-101I1;0.0190185!10609-108F6;0.186289!10048-101G3;0.220286!10781-110G7;0.067843!10181-103D1;0.650967!10159-103A6;0.0380951!10056-101H2;0.00745605!10737-110B8;0.140994!10025-101D7;0.98897!10044-101F8;0.00454612!10424-106D1;0.00130873!10463-106H4;0.0946342!10616-108G4;0.0665718!10486-107A9;0.458487!10062-101H8;0.00889148!10202-103F4;0.141453!10158-103A5;0.0152812!10441-106E9;0.00636677!10031-101E4;0.0223871!10063-101H9;0.0651109!10063-101H9;0.212334!11763-123H8;0.0367661!11765-123I1;0.879845!11768-123I4;0.649176!10807-111A6;0.595034!10790-110H7;0.125397!10798-110I6;0.00844845!10786-110H3;0.0760804!10591-108D6;0.0209353!10593-108D8;0.0109919!10590-108D5;0.130321!10026-101D8;2.76256e-05!10096-102C6;0.379319!10168-103B6;3.06466e-05!10154-103A1;0.133243!10209-103G2;0.0188309!10061-101H7;0.097745!10027-101D9;0.421986!10043-101F7;0.0144637!10783-110G9;4.07268e-05!10028-101E1;0.145902!10060-101H6;0.34067!10203-103F5;0.28977!10059-101H5;0.234142!10047-101G2;0.596943!10029-101E2;0.000811867!10058-101H4;0.0321651!10418-106C4;0.371845!10492-107B6;0.151103!10694-109G1;0.00124217!10797-110I5;0.57553!10057-101H3;0.224073!10100-102D1;0.393128!10055-101H1;0.0645967!10204-103F6;0.394492!10191-103E2;0.0578223!10563-108A5;0.00671473
|name=CNhs12001_bu_f0
|name=CNhs12001_bu_f0
|tomtom_result=SPI1#MA0080.2;-2;0.000670762;0.319283;0.403924;7;CCTCTTCCTCCC;ACTTCCT;-!GABPA#MA0062.2;-1;0.00199773;0.950921;0.403924;10;CCTCTTCCTCCC;CTCTTCCGGT;-!ELF5#MA0136.1;-1;0.00260828;1.24154;0.403924;9;CCTCTTCCTCCC;TACTTCCTT;+!SP1#MA0079.2;-1;0.00268774;1.27937;0.403924;10;CCTCTTCCTCCC;CCCCGCCCCC;+!GABPA#MA0062.2;1;0.00275897;1.31327;0.403924;10;CCTCTTCCTCCC;GCCACTTCCGG;-!ETS1#MA0098.1;-3;0.00276944;1.31825;0.403924;6;CCTCTTCCTCCC;CTTCCG;+!SPI1#MA0080.2;-3;0.00297707;1.41709;0.403924;6;CCTCTTCCTCCC;CTTCCG;-!Eip74EF#MA0026.1;-3;0.00612686;2.91639;0.620415;7;CCTCTTCCTCCC;CTTCCGG;-!SPIB#MA0081.1;-4;0.00653241;3.10943;0.620415;7;CCTCTTCCTCCC;TTCCTCT;-!GCR2#MA0305.1;-2;0.00653241;3.10943;0.620415;7;CCTCTTCCTCCC;GCTTCCT;+!IXR1#MA0323.1;2;0.00749015;3.56531;0.646706;12;CCTCTTCCTCCC;CCCCGCTTCCGGCTT;-!FEV#MA0156.1;-2;0.00928599;4.42013;0.702625;8;CCTCTTCCTCCC;ATTTCCTG;-!YGR067C#MA0425.1;3;0.01103;5.25029;0.702625;11;CCTCTTCCTCCC;ACCCCACTTTTTTG;+!Trl#MA0205.1;0;0.0110575;5.26335;0.702625;10;CCTCTTCCTCCC;TTGCTCTCTC;+!Pax4#MA0068.1;15;0.011097;5.28218;0.702625;12;CCTCTTCCTCCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!Klf4#MA0039.2;-2;0.0122295;5.82126;0.725937;10;CCTCTTCCTCCC;CCTTCCTTTA;-!PPARG::RXRA#MA0065.2;3;0.0136501;6.49746;0.738503;12;CCTCTTCCTCCC;TGACCTTTGCCCTAC;-!SP1#MA0079.2;0;0.0141977;6.75808;0.738503;10;CCTCTTCCTCCC;ACCCCGCCCC;-!Zfx#MA0146.1;4;0.014774;7.03241;0.738503;10;CCTCTTCCTCCC;GGGGCCGAGGCCTG;+!TEAD1#MA0090.1;0;0.0164296;7.82051;0.777574;12;CCTCTTCCTCCC;CACATTCCTCCG;+!Klf4#MA0039.2;1;0.0172627;8.21706;0.777574;9;CCTCTTCCTCCC;GCCCCACCCA;-!EWSR1-FLI1#MA0149.1;-2;0.0180117;8.57359;0.777574;10;CCTCTTCCTCCC;CCTTCCTTCCTTCCTTCC;-
}}
}}

Latest revision as of 13:46, 7 September 2012

Full Name: CNhs12001_bu_f0

Motif matrix
POACGT
1123.79440237273563589.0242476594367211.718388872523351568.6501697965937
2145.846076025009074060.874922402642.1940572097718841244.2721530639103
31360.09790398823321736.4210733524383432.442666180839241964.225565179776
41.46716172205563395271.10868543458927.84268212742838192.76867941721352
51160.9394230864118643.814579279318169.646928131785643618.7862782037682
629.262761337812563760.12135988095681962.76260363619032741.0404838463232
721.5111015961488264633.112556375621116.63225581587666721.931294913635
81.86814878090217685482.9884071436250.08.330652776755858
944.772565612037249.0544973894744545.4324411736886175433.9277045260815
1013.64354944367483297.89478521626321758.9688094401067422.6800646012426
11288.3503354314512870.834308836913462.9984195636449662271.0041448692746
12390.693734816810952668.55819909516731065.72128424252511368.213990546785

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPI1#MA0080.2-20.0006707620.3192830.4039247CCTCTTCCTCCCACTTCCT-
GABPA#MA0062.2-10.001997730.9509210.40392410CCTCTTCCTCCCCTCTTCCGGT-
ELF5#MA0136.1-10.002608281.241540.4039249CCTCTTCCTCCCTACTTCCTT+
SP1#MA0079.2-10.002687741.279370.40392410CCTCTTCCTCCCCCCCGCCCCC+
GABPA#MA0062.210.002758971.313270.40392410CCTCTTCCTCCCGCCACTTCCGG-
ETS1#MA0098.1-30.002769441.318250.4039246CCTCTTCCTCCCCTTCCG+
SPI1#MA0080.2-30.002977071.417090.4039246CCTCTTCCTCCCCTTCCG-
Eip74EF#MA0026.1-30.006126862.916390.6204157CCTCTTCCTCCCCTTCCGG-
SPIB#MA0081.1-40.006532413.109430.6204157CCTCTTCCTCCCTTCCTCT-
GCR2#MA0305.1-20.006532413.109430.6204157CCTCTTCCTCCCGCTTCCT+
IXR1#MA0323.120.007490153.565310.64670612CCTCTTCCTCCCCCCCGCTTCCGGCTT-
FEV#MA0156.1-20.009285994.420130.7026258CCTCTTCCTCCCATTTCCTG-
YGR067C#MA0425.130.011035.250290.70262511CCTCTTCCTCCCACCCCACTTTTTTG+
Trl#MA0205.100.01105755.263350.70262510CCTCTTCCTCCCTTGCTCTCTC+
Pax4#MA0068.1150.0110975.282180.70262512CCTCTTCCTCCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
Klf4#MA0039.2-20.01222955.821260.72593710CCTCTTCCTCCCCCTTCCTTTA-
PPARG::RXRA#MA0065.230.01365016.497460.73850312CCTCTTCCTCCCTGACCTTTGCCCTAC-
SP1#MA0079.200.01419776.758080.73850310CCTCTTCCTCCCACCCCGCCCC-
Zfx#MA0146.140.0147747.032410.73850310CCTCTTCCTCCCGGGGCCGAGGCCTG+
TEAD1#MA0090.100.01642967.820510.77757412CCTCTTCCTCCCCACATTCCTCCG+
Klf4#MA0039.210.01726278.217060.7775749CCTCTTCCTCCCGCCCCACCCA-
EWSR1-FLI1#MA0149.1-20.01801178.573590.77757410CCTCTTCCTCCCCCTTCCTTCCTTCCTTCC-
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