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MacroAPE 1083:6-GTTAACCAATC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;51.324;57.434;460.694;41.548!2;31.772;34.827;42.77;501.631!3;48.88;36.049;36.66;489.411!4;455.195;31.772;62.933;61.1!5;514.462;30.55;24.44;4...")
 
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129A5;0.154058!12184-129A6;0.236358!10809-111A8;0.163847!10597-108E3;0.0100331!10717-109I6;0.441874!10455-106G5;0.0585031!10534-107G3;0.12201!10429-106D6;0.000578683!10464-106H5;0.0238122!10827-111C8;0.193356!10789-110H6;0.163943!10828-111C9;0.140488!10788-110H5;0.287802!10792-110H9;0.241191!10765-110E9;0.246509!10829-111D1;0.146685!10830-111D2;0.462223!10831-111D3;0.69387!10832-111D4;0.245204!10833-111D5;0.122725!10764-110E8;0.261023!10770-110F5;0.359017!10399-106A3;0.0777117!10400-106A4;0.444314!10405-106A9;0.338909!10834-111D6;0.40115!10835-111D7;0.685098!10836-111D8;0.0111657!10837-111D9;0.0674644!10699-109G6;0.00365001!10802-111A1;0.0202636!10796-110I4;0.0506926!10010-101C1;0.37891!10810-111A9;0.19217!10421-106C7;0.22543!10708-109H6;0.00639214!12235-129G3;0.13204!12236-129G4;0.155633!12237-129G5;0.606411!10167-103B5;0.0294793!10151-102I7;0.0402219!10428-106D5;0.124058!10795-110I3;0.356758!10805-111A4;0.979987!10052-101G7;0.222552!10189-103D9;0.289472!10589-108D4;0.530594!10425-106D2;0.253227!10427-106D4;0.611969!10702-109G9;0.0387098!10432-106D9;0.0485944!10496-107C1;0.605512!10718-109I7;0.494171!10011-101C2;0.0709128!10053-101G8;0.42787!10686-109F2;0.155252!10084-102B3;0.750055!10012-101C3;0.0342229!10085-102B4;0.0958245!10482-107A5;0.147036!10419-106C5;0.36141!10080-102A8;0.202381!10760-110E4;0.532525!10709-109H7;0.408184!10710-109H8;0.90893!10703-109H1;0.799179!10719-109I8;0.114641!10642-109A3;0.00225736!10177-103C6;0.99342!10164-103B2;0.0446712!10173-103C2;0.150073!10166-103B4;0.144254!10083-102B2;0.183484!10188-103D8;0.056316!10552-107I3;0.0536513!10553-107I4;0.418862!10013-101C4;0.710075!10536-107G5;0.396561!10618-108G6;0.140388!10423-106C9;0.597472!10785-110H2;0.191392!12238-129G6;0.405018!12239-129G7;0.403721!12240-129G8;0.947455!10416-106C2;0.0634486!10801-110I9;0.0366679!10766-110F1;0.182767!10824-111C5;0.462921!10825-111C6;0.0428385!10826-111C7;0.0404159!10454-106G4;0.0547255!10409-106B4;0.233365!10638-108I8;0.126283!10636-108I6;0.410307!10513-107D9;0.103767!10420-106C6;0.125304!10082-102B1;0.0279585!10014-101C5;0.788484!10070-101I7;0.914558!10452-106G2;0.635079!10453-106G3;0.056578!10449-106F8;0.0407471!10042-101F6;0.0606213!10069-101I6;0.162327!10193-103E4;0.393235!10631-108I1;0.0423523!10438-106E6;0.206833!10488-107B2;0.609604!10196-103E7;0.9512!10071-101I8;0.855571!10071-101I8;0.909489!10041-101F5;0.576781!10451-106G1;0.204737!10450-106F9;0.00672515!10604-108F1;0.0524801!10605-108F2;0.113488!10606-108F3;0.169819!10603-108E9;0.126214!10497-107C2;0.314887!10448-106F7;0.172047!10643-109A4;0.325761!10426-106D3;0.526581!10431-106D8;0.802333!10197-103E8;0.295353!10443-106F2;0.354846!10815-111B5;0.0284523!10816-111B6;0.313062!10817-111B7;0.159237!10015-101C6;0.293671!10410-106B5;0.817511!10054-101G9;0.707991!10758-110E2;0.373007!10711-109H9;0.856428!10040-101F4;0.0437109!10470-106I2;0.094649!10415-106C1;0.3934!10198-103E9;0.0377197!10614-108G2;0.325346!10612-108F9;0.533942!10549-107H9;0.766394!10615-108G3;0.011618!10487-107B1;0.151368!10433-106E1;0.0926494!10688-109F4;0.800602!10444-106F3;0.919509!10444-106F3;0.704424!10485-107A8;0.438103!10413-106B8;0.0030387!10175-103C4;0.137323!10161-103A8;0.058003!12131-128D7;0.193046!10624-108H3;0.539211!10712-109I1;0.878602!10205-103F7;0.399578!10206-103F8;0.269496!10207-103F9;0.358523!10050-101G5;0.157882!10051-101G6;0.904073!10016-101C7;0.369373!10046-101G1;0.595772!10778-110G4;0.195882!10633-108I3;0.757039!10818-111B8;0.112065!10819-111B9;0.272724!10820-111C1;0.38616!10484-107A7;0.285251!10808-111A7;0.926851!10169-103B7;0.0735712!10153-102I9;0.12844!13425-144D5;0.181825!13433-144E4;0.0029788!13437-144E8;0.00329678!11904-125F5;0.00243367!11905-125F6;0.654337!10039-101F3;0.516092!10791-110H8;0.0820721!10017-101C8;0.548897!10045-101F9;0.400274!10509-107D5;0.379995!10839-111E2;0.872029!10692-109F8;0.616514!10079-102A7;0.196394!10078-102A6;0.720779!10721-110A1;0.237354!10569-108B2;0.655081!10570-108B3;0.443019!10571-108B4;0.254706!10647-109A8;0.94594!10752-110D5;0.097052!10782-110G8;0.157039!10726-110A6;0.579763!10018-101C9;0.202761!10086-102B5;0.273032!10182-103D2;0.0490543!10165-103B3;0.0441321!10499-107C4;0.101356!10408-106B3;0.858242!10019-101D1;0.46409!10068-101I5;0.486969!10075-102A3;0.571868!10077-102A5;0.121798!10727-110A7;0.0184102!10775-110G1;0.392719!10412-106B7;0.192602!12231-129F8;0.896219!12232-129F9;0.16639!12233-129G1;0.25231!12234-129G2;0.136999!10414-106B9;0.318943!10170-103B8;0.411284!10183-103D3;0.103848!10150-102I6;0.0576655!10174-103C3;0.146124!10155-103A2;0.0378881!10038-101F2;0.131316!10838-111E1;0.0728682!10759-110E3;0.0394575!10514-107E1;0.371556!10465-106H6;0.256479!10691-109F7;0.714343!10843-111E6;0.138281!10844-111E7;0.262785!11747-123G1;0.395062!11748-123G2;0.41116!11749-123G3;0.337376!11750-123G4;0.565685!11751-123G5;0.383742!11840-124H4;0.136596!11752-123G6;0.0689306!11753-123G7;0.70951!11754-123G8;0.524658!11755-123G9;0.0725379!11756-123H1;0.216286!11833-124G6;0.715754!11760-123H5;0.139551!11836-124G9;0.981876!11758-123H3;0.734389!11835-124G8;0.339758!11762-123H7;0.500716!11838-124H2;0.0886146!11757-123H2;0.125652!11759-123H4;0.94106!11761-123H6;0.639248!11842-124H6;0.666525!11837-124H1;0.267833!10568-108B1;0.223815!13230-141I8;0.998084!13231-141I9;0.935289!10696-109G3;0.603779!10493-107B7;0.307203!10494-107B8;0.587939!10850-111F4;0.0285921!10851-111F5;0.0567996!10852-111F6;0.297852!10853-111F7;0.055725!10854-111F8;0.00274573!10855-111F9;0.46069!10856-111G1;0.0218381!10847-111F1;0.676145!10846-111E9;0.0336211!10848-111F2;0.447771!10845-111E8;0.419246!10857-111G2;0.521899!10858-111G3;0.0961775!10156-103A3;0.812961!11901-125F2;0.18194!11902-125F3;0.773191!11903-125F4;0.820294!10689-109F5;0.602518!10648-109A9;0.128031!10784-110H1;0.802988!10744-110C6;0.935966!10772-110F7;0.286946!10474-106I6;0.148037!10600-108E6;0.0647705!10684-109E9;0.00660417!12226-129F3;0.0157114!12227-129F4;0.02202!10508-107D4;0.00498209!10539-107G8;0.263948!10607-108F4;0.0578415!10555-107I6;0.00287284!10774-110F9;0.147902!10637-108I7;0.0811216!10663-109C6;0.0463907!10728-110A8;0.0651859!10729-110A9;0.475276!10430-106D7;0.775718!10730-110B1;0.019602!10813-111B3;0.0155583!10812-111B2;0.567665!10037-101F1;0.804592!10172-103C1;0.101912!10163-103B1;0.0945495!10076-102A4;0.165038!10073-102A1;0.0787084!10036-101E9;0.40128!10195-103E6;0.0691668!10277-104E7;0.132744!10434-106E2;0.0976961!10550-107I1;0.88502!10545-107H5;0.5435!10544-107H4;0.75095!10704-109H2;0.923604!10510-107D6;0.0969229!10558-107I9;0.46571!10020-101D2;0.598779!10732-110B3;0.351278!10049-101G4;0.393701!10698-109G5;0.012335!10437-106E5;0.662312!10417-106C3;0.462035!10035-101E8;0.649061!10171-103B9;0.0897589!10157-103A4;0.110322!10034-101E7;0.0853382!10072-101I9;0.0745499!10199-103F1;0.557222!10200-103F2;0.00408745!10697-109G4;0.0877277!10723-110A3;0.0482202!10179-103C8;0.336214!10160-103A7;0.172245!10180-103C9;0.57473!10162-103A9;0.10199!10021-101D3;0.218952!10840-111E3;0.699949!10706-109H4;0.0114933!10033-101E6;0.812364!10032-101E5;0.0703412!10490-107B4;0.0828766!10439-106E7;0.414565!10022-101D4;0.733955!10176-103C5;0.359605!10469-106I1;0.116884!10067-101I4;0.0631241!10411-106B6;0.844274!10471-106I3;0.51405!10030-101E3;0.613287!10475-106I7;0.413964!10787-110H4;0.0397939!10477-106I9;0.00643304!10695-109G2;0.00117117!11771-123I7;0.619755!11772-123I8;0.0857335!11773-123I9;0.272396!10093-102C3;0.22056!10442-106F1;0.00920638!10442-106F1;0.0296613!10201-103F3;0.00948907!10639-108I9;0.150388!11843-124H7;0.17733!11841-124H5;0.203614!10693-109F9;0.951773!10436-106E4;0.96191!10483-107A6;0.688451!10282-104F3;0.733867!10023-101D5;0.197009!10066-101I3;0.159983!10065-101I2;0.771512!10800-110I8;0.739442!10610-108F7;0.0418321!10841-111E4;0.856578!10541-107H1;0.0431034!10842-111E5;0.0993135!10562-108A4;0.00874323!10024-101D6;0.167211!10064-101I1;0.792441!10609-108F6;0.541549!10048-101G3;0.41799!10781-110G7;0.304424!10181-103D1;0.537009!10159-103A6;0.0701302!10056-101H2;0.297885!10737-110B8;0.239094!10025-101D7;0.769024!10044-101F8;0.590571!10424-106D1;0.525765!10463-106H4;0.0400795!10616-108G4;0.958281!10486-107A9;0.357428!10062-101H8;0.686579!10202-103F4;0.565451!10158-103A5;0.00330074!10441-106E9;0.151787!10031-101E4;0.166896!10063-101H9;0.0729867!10063-101H9;0.525845!11763-123H8;0.944283!11765-123I1;0.610944!11768-123I4;0.157099!10807-111A6;0.550957!10790-110H7;0.105711!10798-110I6;0.314536!10786-110H3;0.000225944!10591-108D6;0.688796!10593-108D8;0.243854!10590-108D5;0.79774!10026-101D8;0.0175783!10096-102C6;0.139146!10168-103B6;0.0806052!10154-103A1;0.0504675!10209-103G2;0.207558!10061-101H7;0.214043!10027-101D9;0.801662!10043-101F7;0.0149073!10783-110G9;0.0185477!10028-101E1;0.820132!10060-101H6;0.257481!10203-103F5;0.341164!10059-101H5;0.351921!10047-101G2;0.42548!10029-101E2;0.580371!10058-101H4;0.050275!10418-106C4;0.48046!10492-107B6;0.433707!10694-109G1;0.0852586!10797-110I5;0.0661554!10057-101H3;0.00422616!10100-102D1;0.903828!10055-101H1;0.42394!10204-103F6;0.549939!10191-103E2;0.60203!10563-108A5;0.500386
|name=6-GTTAACCAATC,CNhs12340,BestGuess:NFYA_f1_HM09(0.713739588807101),T:611.0(16.41%),B:4675.3(10.26%),P:1e-30
|name=6-GTTAACCAATC,CNhs12340,BestGuess:NFYA_f1_HM09(0.713739588807101),T:611.0(16.41%),B:4675.3(10.26%),P:1e-30
|tomtom_result=NFYA#MA0060.1;0;0.00025456;0.12117;0.242279;11;GTTAACCAATC;CTCAGCCAATCAGCGC;+!HAP3#MA0314.1;1;0.000684749;0.32594;0.325858;11;GTTAACCAATC;TCTGAACCAATCAGA;-!SRY#MA0084.1;-1;0.00231658;1.10269;0.698469;9;GTTAACCAATC;GTAAACAAT;+!HLF#MA0043.1;1;0.00303416;1.44426;0.698469;11;GTTAACCAATC;GGTTACGCAATT;+!HAP2#MA0313.1;-4;0.00366936;1.74661;0.698469;5;GTTAACCAATC;ACCAA;-!fkh#MA0446.1;-1;0.0088151;4.19599;0.999747;10;GTTAACCAATC;TTAAGCAAACA;-!ttx-3::ceh-10#MA0263.1;-1;0.00882297;4.19973;0.999747;10;GTTAACCAATC;TTAACGAAGCCAAT;-!HNF1B#MA0153.1;0;0.0105324;5.0134;0.999747;11;GTTAACCAATC;GTTAAATATTAA;-!Sox5#MA0087.1;-3;0.0105549;5.02413;0.999747;7;GTTAACCAATC;AAACAAT;+!CIN5#MA0284.1;-1;0.0116703;5.55506;0.999747;10;GTTAACCAATC;TTACGTAATC;+!CEBPA#MA0102.2;-1;0.0127934;6.08966;0.999747;9;GTTAACCAATC;TTTCGCAAT;+!lbe#MA0231.1;-2;0.0134174;6.38668;0.999747;6;GTTAACCAATC;TAACTA;+!Cebpa#MA0102.1;-1;0.0151608;7.21655;0.999747;10;GTTAACCAATC;TTTCGCAATCTT;+!FKH1#MA0296.1;8;0.0196114;9.33502;0.999747;11;GTTAACCAATC;TCCTCTTTGTTTACAATTCA;-!br_Z1#MA0010.1;3;0.0196544;9.3555;0.999747;11;GTTAACCAATC;GTAATAAACAAATC;+
}}
}}

Latest revision as of 14:03, 7 September 2012

Full Name: 6-GTTAACCAATC,CNhs12340,BestGuess:NFYA_f1_HM09(0.713739588807101),T:611.0(16.41%),B:4675.3(10.26%),P:1e-30

Motif matrix
POACGT
151.32457.434460.69441.548
231.77234.82742.77501.631
348.8836.04936.66489.411
4455.19531.77262.93361.1
5514.46230.5524.4441.548
659.878477.19158.65615.275
749.491531.573.05526.884
8549.28930.550.61130.55
9496.13253.15737.27124.44
1050.71314.66439.104506.519
1129.939519.96121.99639.104

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFYA#MA0060.100.000254560.121170.24227911GTTAACCAATCCTCAGCCAATCAGCGC+
HAP3#MA0314.110.0006847490.325940.32585811GTTAACCAATCTCTGAACCAATCAGA-
SRY#MA0084.1-10.002316581.102690.6984699GTTAACCAATCGTAAACAAT+
HLF#MA0043.110.003034161.444260.69846911GTTAACCAATCGGTTACGCAATT+
HAP2#MA0313.1-40.003669361.746610.6984695GTTAACCAATCACCAA-
fkh#MA0446.1-10.00881514.195990.99974710GTTAACCAATCTTAAGCAAACA-
ttx-3::ceh-10#MA0263.1-10.008822974.199730.99974710GTTAACCAATCTTAACGAAGCCAAT-
HNF1B#MA0153.100.01053245.01340.99974711GTTAACCAATCGTTAAATATTAA-
Sox5#MA0087.1-30.01055495.024130.9997477GTTAACCAATCAAACAAT+
CIN5#MA0284.1-10.01167035.555060.99974710GTTAACCAATCTTACGTAATC+
CEBPA#MA0102.2-10.01279346.089660.9997479GTTAACCAATCTTTCGCAAT+
lbe#MA0231.1-20.01341746.386680.9997476GTTAACCAATCTAACTA+
Cebpa#MA0102.1-10.01516087.216550.99974710GTTAACCAATCTTTCGCAATCTT+
FKH1#MA0296.180.01961149.335020.99974711GTTAACCAATCTCCTCTTTGTTTACAATTCA-
br_Z1#MA0010.130.01965449.35550.99974711GTTAACCAATCGTAATAAACAAATC+
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