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MacroAPE 1083:Motif GNGCTA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;4144;0!02;1036;1036;1036;1036!03;0;0;4144;0!04;0;4144;0;0!05;0;0;0;4144!06;4144;0;0;0 |macroape_1083_sample_pvalues=11376-118A8;0.4137...")
 
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-106H5;0.382346!10827-111C8;0.568801!10789-110H6;0.801552!10828-111C9;0.645548!10788-110H5;0.4583!10792-110H9;0.881424!10765-110E9;0.668148!10829-111D1;0.752091!10830-111D2;0.924644!10831-111D3;0.883711!10832-111D4;0.670413!10833-111D5;0.951941!10764-110E8;0.853315!10770-110F5;0.838182!10399-106A3;0.830798!10400-106A4;0.994737!10405-106A9;0.987688!10834-111D6;0.924343!10835-111D7;0.875876!10836-111D8;0.437306!10837-111D9;0.41927!10699-109G6;0.847798!10802-111A1;0.741926!10796-110I4;0.947284!10010-101C1;0.893553!10810-111A9;0.475956!10421-106C7;0.628443!10708-109H6;0.312476!12235-129G3;0.619879!12236-129G4;0.69309!12237-129G5;0.563085!10167-103B5;0.601463!10151-102I7;0.768448!10428-106D5;0.760789!10795-110I3;0.166426!10805-111A4;0.561693!10052-101G7;0.827281!10189-103D9;0.526955!10589-108D4;0.635779!10425-106D2;0.694074!10427-106D4;0.531045!10702-109G9;0.509431!10432-106D9;0.424919!10496-107C1;0.691184!10718-109I7;0.808562!10011-101C2;0.904758!10053-101G8;0.630085!10686-109F2;0.381542!10084-102B3;0.657307!10012-101C3;0.78473!10085-102B4;0.850455!10482-107A5;0.622845!10419-106C5;0.712408!10080-102A8;0.640822!10760-110E4;0.592099!10709-109H7;0.650238!10710-109H8;0.975664!10703-109H1;0.557723!10719-109I8;0.715796!10642-109A3;0.916701!10177-103C6;0.984212!10164-103B2;0.912521!10173-103C2;0.943917!10166-103B4;0.852897!10083-102B2;0.879167!10188-103D8;0.963553!10552-107I3;0.776898!10553-107I4;0.709189!10013-101C4;0.832539!10536-107G5;0.598737!10618-108G6;0.472037!10423-106C9;0.869116!10785-110H2;0.854817!12238-129G6;0.956114!12239-129G7;0.755155!12240-129G8;0.267676!10416-106C2;0.85786!10801-110I9;0.567118!10766-110F1;0.942881!10824-111C5;0.935246!10825-111C6;0.906403!10826-111C7;0.906473!10454-106G4;0.848985!10409-106B4;0.757617!10638-108I8;0.692998!10636-108I6;0.566359!10513-107D9;0.709849!10420-106C6;0.33475!10082-102B1;0.91475!10014-101C5;0.66766!10070-101I7;0.704161!10452-106G2;0.386119!10453-106G3;0.145346!10449-106F8;0.182915!10042-101F6;0.262119!10069-101I6;0.966905!10193-103E4;0.0847416!10631-108I1;0.953898!10438-106E6;0.995416!10488-107B2;0.605144!10196-103E7;0.534131!10071-101I8;0.967617!10071-101I8;0.553395!10041-101F5;0.57698!10451-106G1;0.688436!10450-106F9;0.817729!10604-108F1;0.923908!10605-108F2;0.919091!10606-108F3;0.800279!10603-108E9;0.967603!10497-107C2;0.921766!10448-106F7;0.377189!10643-109A4;0.289111!10426-106D3;0.183437!10431-106D8;0.41531!10197-103E8;0.860577!10443-106F2;0.485183!10815-111B5;0.545871!10816-111B6;0.682117!10817-111B7;0.752594!10015-101C6;0.699227!10410-106B5;0.645567!10054-101G9;0.965859!10758-110E2;0.324188!10711-109H9;0.652766!10040-101F4;0.899692!10470-106I2;0.855132!10415-106C1;0.905115!10198-103E9;0.642862!10614-108G2;0.792641!10612-108F9;0.793452!10549-107H9;0.872605!10615-108G3;0.805452!10487-107B1;0.479377!10433-106E1;0.565759!10688-109F4;0.259754!10444-106F3;0.60383!10444-106F3;0.090914!10485-107A8;0.0590391!10413-106B8;0.911836!10175-103C4;0.52702!10161-103A8;0.907905!12131-128D7;0.942983!10624-108H3;0.560507!10712-109I1;0.348016!10205-103F7;0.185971!10206-103F8;0.382081!10207-103F9;0.405215!10050-101G5;0.400461!10051-101G6;0.255647!10016-101C7;0.420447!10046-101G1;0.288487!10778-110G4;0.165108!10633-108I3;0.270196!10818-111B8;0.924529!10819-111B9;0.578762!10820-111C1;0.547333!10484-107A7;0.533785!10808-111A7;0.588159!10169-103B7;0.772966!10153-102I9;0.789514!13425-144D5;0.809235!13433-144E4;0.935293!13437-144E8;0.955631!11904-125F5;0.957558!11905-125F6;0.161182!10039-101F3;0.389809!10791-110H8;0.843793!10017-101C8;0.864591!10045-101F9;0.813884!10509-107D5;0.470632!10839-111E2;0.676273!10692-109F8;0.831673!10079-102A7;0.549146!10078-102A6;0.300657!10721-110A1;0.135226!10569-108B2;0.913142!10570-108B3;0.631073!10571-108B4;0.994999!10647-109A8;0.579439!10752-110D5;0.796451!10782-110G8;0.805683!10726-110A6;0.879193!10018-101C9;0.977621!10086-102B5;0.679886!10182-103D2;0.353073!10165-103B3;0.813771!10499-107C4;0.870963!10408-106B3;0.382282!10019-101D1;0.426816!10068-101I5;0.73698!10075-102A3;0.531131!10077-102A5;0.503681!10727-110A7;0.935404!10775-110G1;0.547618!10412-106B7;0.236819!12231-129F8;0.927827!12232-129F9;0.600452!12233-129G1;0.966075!12234-129G2;0.706843!10414-106B9;0.507586!10170-103B8;0.54152!10183-103D3;0.892105!10150-102I6;0.780502!10174-103C3;0.821793!10155-103A2;0.892954!10038-101F2;0.911378!10838-111E1;0.86387!10759-110E3;0.952499!10514-107E1;0.684351!10465-106H6;0.352875!10691-109F7;0.21047!10843-111E6;0.906015!10844-111E7;0.630283!11747-123G1;0.959827!11748-123G2;0.301084!11749-123G3;0.132685!11750-123G4;0.134859!11751-123G5;0.271743!11840-124H4;0.129459!11752-123G6;0.311077!11753-123G7;0.607103!11754-123G8;0.339675!11755-123G9;0.0594704!11756-123H1;0.29645!11833-124G6;0.805574!11760-123H5;0.997804!11836-124G9;0.268913!11758-123H3;0.232811!11835-124G8;0.364016!11762-123H7;0.38667!11838-124H2;0.675266!11757-123H2;0.818017!11759-123H4;0.701096!11761-123H6;0.250508!11842-124H6;0.524959!11837-124H1;0.199717!10568-108B1;0.439113!13230-141I8;0.561346!13231-141I9;0.145678!10696-109G3;0.145837!10493-107B7;0.459393!10494-107B8;0.455187!10850-111F4;0.158461!10851-111F5;0.83979!10852-111F6;0.713492!10853-111F7;0.917634!10854-111F8;0.955073!10855-111F9;0.771786!10856-111G1;0.996828!10847-111F1;0.811758!10846-111E9;0.765406!10848-111F2;0.723866!10845-111E8;0.390083!10857-111G2;0.304869!10858-111G3;0.718526!10156-103A3;0.739293!11901-125F2;0.789073!11902-125F3;0.0553809!11903-125F4;0.0285087!10689-109F5;0.0546767!10648-109A9;0.796332!10784-110H1;0.837063!10744-110C6;0.637874!10772-110F7;0.255253!10474-106I6;0.80133!10600-108E6;0.500534!10684-109E9;0.745465!12226-129F3;0.940351!12227-129F4;0.459613!10508-107D4;0.890226!10539-107G8;0.857021!10607-108F4;0.812775!10555-107I6;0.90987!10774-110F9;0.717822!10637-108I7;0.792227!10663-109C6;0.645923!10728-110A8;0.768313!10729-110A9;0.847873!10430-106D7;0.0918599!10730-110B1;0.44396!10813-111B3;0.834383!10812-111B2;0.231257!10037-101F1;0.964358!10172-103C1;0.895432!10163-103B1;0.712382!10076-102A4;0.790917!10073-102A1;0.810706!10036-101E9;0.574907!10195-103E6;0.829004!10277-104E7;0.862207!10434-106E2;0.823707!10550-107I1;0.502919!10545-107H5;0.954529!10544-107H4;0.831967!10704-109H2;0.790424!10510-107D6;0.902776!10558-107I9;0.765553!10020-101D2;0.447939!10732-110B3;0.60004!10049-101G4;0.449104!10698-109G5;0.63512!10437-106E5;0.802204!10417-106C3;0.805942!10035-101E8;0.505057!10171-103B9;0.863485!10157-103A4;0.759057!10034-101E7;0.83311!10072-101I9;0.871678!10199-103F1;0.482593!10200-103F2;0.694169!10697-109G4;0.310766!10723-110A3;0.484477!10179-103C8;0.93023!10160-103A7;0.740535!10180-103C9;0.839637!10162-103A9;0.713713!10021-101D3;0.984732!10840-111E3;0.646263!10706-109H4;0.388266!10033-101E6;0.937294!10032-101E5;0.937849!10490-107B4;0.82698!10439-106E7;0.602366!10022-101D4;0.833852!10176-103C5;0.537994!10469-106I1;0.919042!10067-101I4;0.826595!10411-106B6;0.238672!10471-106I3;0.681367!10030-101E3;0.765216!10475-106I7;0.536906!10787-110H4;0.870374!10477-106I9;0.70289!10695-109G2;0.749872!11771-123I7;0.106904!11772-123I8;0.379433!11773-123I9;0.550413!10093-102C3;0.525953!10442-106F1;0.893661!10442-106F1;0.207039!10201-103F3;0.170686!10639-108I9;0.965677!11843-124H7;0.986939!11841-124H5;0.956188!10693-109F9;0.798957!10436-106E4;0.789652!10483-107A6;0.301275!10282-104F3;0.20709!10023-101D5;0.286388!10066-101I3;0.13404!10065-101I2;0.0582473!10800-110I8;0.25111!10610-108F7;0.758382!10841-111E4;0.615526!10541-107H1;0.963279!10842-111E5;0.698271!10562-108A4;0.482666!10024-101D6;0.572226!10064-101I1;0.987474!10609-108F6;0.300021!10048-101G3;0.327114!10781-110G7;0.518179!10181-103D1;0.639877!10159-103A6;0.76857!10056-101H2;0.878312!10737-110B8;0.432732!10025-101D7;0.187377!10044-101F8;0.951775!10424-106D1;0.431206!10463-106H4;0.446855!10616-108G4;0.726764!10486-107A9;0.284777!10062-101H8;0.325664!10202-103F4;0.478827!10158-103A5;0.695327!10441-106E9;0.975269!10031-101E4;0.751321!10063-101H9;0.816581!10063-101H9;0.496513!11763-123H8;0.656215!11765-123I1;0.237883!11768-123I4;0.132192!10807-111A6;0.0880632!10790-110H7;0.492734!10798-110I6;0.824898!10786-110H3;0.938012!10591-108D6;0.395203!10593-108D8;0.330529!10590-108D5;0.426647!10026-101D8;0.699205!10096-102C6;0.999515!10168-103B6;0.36107!10154-103A1;0.881944!10209-103G2;0.938691!10061-101H7;0.361621!10027-101D9;0.177617!10043-101F7;0.50801!10783-110G9;0.78561!10028-101E1;0.341967!10060-101H6;0.660172!10203-103F5;0.213207!10059-101H5;0.324628!10047-101G2;0.10541!10029-101E2;0.614848!10058-101H4;0.71677!10418-106C4;0.272161!10492-107B6;0.956762!10694-109G1;0.372088!10797-110I5;0.0430339!10057-101H3;0.521782!10100-102D1;0.196428!10055-101H1;0.402295!10204-103F6;0.174251!10191-103E2;0.768952!10563-108A5;0.546303
|name=motif_GNGCTA
|name=motif_GNGCTA
|tomtom_result=STP4#MA0397.1;1;0.00161002;0.766371;0.640089;6;GAGCTA;TGCGCTATC;-!SNT2#MA0384.1;2;0.00198031;0.942626;0.640089;6;GAGCTA;CGGCGCTACCA;-!STP3#MA0396.1;1;0.00201709;0.960133;0.640089;6;GAGCTA;TGCGCTAGC;-!STB5#MA0392.1;2;0.00359569;1.71155;0.855774;6;GAGCTA;CGGTGTTA;+!odd#MA0454.1;0;0.0107047;5.09544;1;6;GAGCTA;CTGCTACTGTT;-!RTG3#MA0376.1;10;0.0201478;9.59034;1;6;GAGCTA;GACTAAGCACGTGCTAATAT;-
}}
}}

Latest revision as of 14:11, 7 September 2012

Full Name: motif_GNGCTA

Motif matrix
POACGT
010041440
021036103610361036
030041440
040414400
050004144
064144000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STP4#MA0397.110.001610020.7663710.6400896GAGCTATGCGCTATC-
SNT2#MA0384.120.001980310.9426260.6400896GAGCTACGGCGCTACCA-
STP3#MA0396.110.002017090.9601330.6400896GAGCTATGCGCTAGC-
STB5#MA0392.120.003595691.711550.8557746GAGCTACGGTGTTA+
odd#MA0454.100.01070475.0954416GAGCTACTGCTACTGTT-
RTG3#MA0376.1100.02014789.5903416GAGCTAGACTAAGCACGTGCTAATAT-
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