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MacroAPE 1083:5-CGTCTGATA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;54.372;366.42;138.885;31.323!2;54.963;49.053;420.792;66.192!3;34.278;95.742;167.253;293.136!4;0.591;439.704;85.695;65.01!5;202.713;33.096;2....")
 
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5-106G5;0.523916!10534-107G3;0.175409!10429-106D6;0.0763238!10464-106H5;0.869431!10827-111C8;0.804559!10789-110H6;0.669276!10828-111C9;0.667223!10788-110H5;0.914567!10792-110H9;0.302301!10765-110E9;0.515349!10829-111D1;0.196008!10830-111D2;0.29322!10831-111D3;0.533168!10832-111D4;0.841487!10833-111D5;0.185146!10764-110E8;0.223415!10770-110F5;0.129871!10399-106A3;0.110813!10400-106A4;0.0466777!10405-106A9;0.0912454!10834-111D6;0.0542438!10835-111D7;0.293673!10836-111D8;0.642861!10837-111D9;0.142598!10699-109G6;0.0276741!10802-111A1;0.515525!10796-110I4;0.0409402!10010-101C1;0.519625!10810-111A9;0.554222!10421-106C7;0.290684!10708-109H6;0.301144!12235-129G3;0.350561!12236-129G4;0.933408!12237-129G5;0.877679!10167-103B5;0.886821!10151-102I7;0.893669!10428-106D5;0.830943!10795-110I3;0.620409!10805-111A4;0.10904!10052-101G7;0.477774!10189-103D9;0.725713!10589-108D4;0.624392!10425-106D2;0.870003!10427-106D4;0.614793!10702-109G9;0.694612!10432-106D9;0.310149!10496-107C1;0.141199!10718-109I7;0.0327313!10011-101C2;0.307719!10053-101G8;0.57413!10686-109F2;0.152196!10084-102B3;0.43102!10012-101C3;0.672158!10085-102B4;0.766452!10482-107A5;0.397736!10419-106C5;0.692536!10080-102A8;0.373498!10760-110E4;0.510069!10709-109H7;0.995331!10710-109H8;0.741704!10703-109H1;0.508291!10719-109I8;0.851418!10642-109A3;0.0489212!10177-103C6;0.913644!10164-103B2;0.86656!10173-103C2;0.830402!10166-103B4;0.486333!10083-102B2;0.360209!10188-103D8;0.247107!10552-107I3;0.822461!10553-107I4;0.638441!10013-101C4;0.0289589!10536-107G5;0.527951!10618-108G6;0.242296!10423-106C9;0.29753!10785-110H2;0.851666!12238-129G6;0.842483!12239-129G7;0.46067!12240-129G8;0.443212!10416-106C2;0.64482!10801-110I9;0.412012!10766-110F1;0.312548!10824-111C5;0.659403!10825-111C6;0.613592!10826-111C7;0.488377!10454-106G4;0.573065!10409-106B4;0.353191!10638-108I8;0.0452406!10636-108I6;0.231399!10513-107D9;0.390363!10420-106C6;0.457143!10082-102B1;0.755077!10014-101C5;0.136577!10070-101I7;0.415531!10452-106G2;0.204341!10453-106G3;0.755391!10449-106F8;0.706362!10042-101F6;0.77521!10069-101I6;0.704117!10193-103E4;0.100206!10631-108I1;0.729828!10438-106E6;0.666349!10488-107B2;0.16058!10196-103E7;0.710808!10071-101I8;0.710096!10071-101I8;0.437858!10041-101F5;0.119957!10451-106G1;0.27905!10450-106F9;0.938341!10604-108F1;0.711213!10605-108F2;0.230138!10606-108F3;0.463212!10603-108E9;0.187434!10497-107C2;0.367651!10448-106F7;0.754093!10643-109A4;0.568793!10426-106D3;0.550869!10431-106D8;0.0912127!10197-103E8;0.0621158!10443-106F2;0.604113!10815-111B5;0.614714!10816-111B6;0.246647!10817-111B7;0.131238!10015-101C6;0.279769!10410-106B5;0.325422!10054-101G9;0.0366048!10758-110E2;0.0940262!10711-109H9;0.973045!10040-101F4;0.437151!10470-106I2;0.803551!10415-106C1;0.37014!10198-103E9;0.692633!10614-108G2;0.833588!10612-108F9;0.839949!10549-107H9;0.583551!10615-108G3;0.266001!10487-107B1;0.722275!10433-106E1;0.936353!10688-109F4;0.177054!10444-106F3;0.185249!10444-106F3;0.214097!10485-107A8;0.192101!10413-106B8;0.754897!10175-103C4;0.326399!10161-103A8;0.973288!12131-128D7;0.926385!10624-108H3;0.638402!10712-109I1;0.69866!10205-103F7;0.780686!10206-103F8;0.34858!10207-103F9;0.378472!10050-101G5;0.196595!10051-101G6;0.189631!10016-101C7;0.258774!10046-101G1;0.269963!10778-110G4;0.118076!10633-108I3;0.677463!10818-111B8;0.528263!10819-111B9;0.723654!10820-111C1;0.737578!10484-107A7;0.715418!10808-111A7;0.0372146!10169-103B7;0.975931!10153-102I9;0.967677!13425-144D5;0.953514!13433-144E4;0.422628!13437-144E8;0.509169!11904-125F5;0.632637!11905-125F6;0.109241!10039-101F3;0.45553!10791-110H8;0.848426!10017-101C8;0.907355!10045-101F9;0.973824!10509-107D5;0.112693!10839-111E2;0.286956!10692-109F8;0.484098!10079-102A7;0.122955!10078-102A6;0.228113!10721-110A1;0.35667!10569-108B2;0.0296667!10570-108B3;0.552276!10571-108B4;0.630588!10647-109A8;0.857686!10752-110D5;0.0184253!10782-110G8;0.214042!10726-110A6;0.16037!10018-101C9;0.391606!10086-102B5;0.320646!10182-103D2;0.000149336!10165-103B3;0.996767!10499-107C4;0.811317!10408-106B3;0.527218!10019-101D1;0.866081!10068-101I5;0.693949!10075-102A3;0.329272!10077-102A5;0.935371!10727-110A7;0.838021!10775-110G1;0.348037!10412-106B7;0.0463638!12231-129F8;0.578862!12232-129F9;0.96092!12233-129G1;0.896436!12234-129G2;0.739551!10414-106B9;0.844713!10170-103B8;0.550684!10183-103D3;0.895243!10150-102I6;0.61445!10174-103C3;0.814503!10155-103A2;0.696599!10038-101F2;0.71918!10838-111E1;0.764358!10759-110E3;0.200152!10514-107E1;0.255171!10465-106H6;0.315266!10691-109F7;0.189808!10843-111E6;0.485294!10844-111E7;0.974654!11747-123G1;0.165636!11748-123G2;0.936708!11749-123G3;0.994775!11750-123G4;0.787664!11751-123G5;0.851759!11840-124H4;0.856988!11752-123G6;0.757266!11753-123G7;0.57294!11754-123G8;0.807596!11755-123G9;0.542361!11756-123H1;0.832551!11833-124G6;0.904354!11760-123H5;0.356355!11836-124G9;0.755749!11758-123H3;0.429576!11835-124G8;0.620462!11762-123H7;0.246258!11838-124H2;0.224564!11757-123H2;0.318454!11759-123H4;0.970206!11761-123H6;0.908945!11842-124H6;0.617363!11837-124H1;0.865313!10568-108B1;0.359389!13230-141I8;0.728143!13231-141I9;0.968993!10696-109G3;0.867552!10493-107B7;0.441771!10494-107B8;0.883231!10850-111F4;0.311128!10851-111F5;0.532283!10852-111F6;0.629796!10853-111F7;0.58775!10854-111F8;0.94016!10855-111F9;0.426081!10856-111G1;0.187466!10847-111F1;0.242087!10846-111E9;0.15208!10848-111F2;0.473712!10845-111E8;0.741787!10857-111G2;0.818227!10858-111G3;0.0303555!10156-103A3;0.168009!11901-125F2;0.803975!11902-125F3;0.00642135!11903-125F4;0.0104568!10689-109F5;0.00141984!10648-109A9;0.882482!10784-110H1;0.288547!10744-110C6;0.62075!10772-110F7;0.325676!10474-106I6;0.080619!10600-108E6;0.0183181!10684-109E9;0.179407!12226-129F3;0.0109167!12227-129F4;0.740862!10508-107D4;0.40949!10539-107G8;0.6036!10607-108F4;0.767422!10555-107I6;0.00369625!10774-110F9;0.73486!10637-108I7;0.947892!10663-109C6;0.207756!10728-110A8;0.0198601!10729-110A9;0.258195!10430-106D7;0.876485!10730-110B1;0.433937!10813-111B3;0.808475!10812-111B2;0.350957!10037-101F1;0.651757!10172-103C1;0.978159!10163-103B1;0.867631!10076-102A4;0.931107!10073-102A1;0.91481!10036-101E9;0.232969!10195-103E6;0.844758!10277-104E7;0.892372!10434-106E2;0.53531!10550-107I1;0.9866!10545-107H5;0.735388!10544-107H4;0.634207!10704-109H2;0.0983544!10510-107D6;0.668955!10558-107I9;0.241704!10020-101D2;0.0942826!10732-110B3;0.328982!10049-101G4;0.911631!10698-109G5;0.747532!10437-106E5;0.518904!10417-106C3;0.756727!10035-101E8;0.231178!10171-103B9;0.79891!10157-103A4;0.559234!10034-101E7;0.763507!10072-101I9;0.877197!10199-103F1;0.189774!10200-103F2;0.589634!10697-109G4;0.289521!10723-110A3;0.724687!10179-103C8;0.0503413!10160-103A7;0.267545!10180-103C9;0.364176!10162-103A9;0.258377!10021-101D3;0.174912!10840-111E3;0.217902!10706-109H4;0.206603!10033-101E6;0.410586!10032-101E5;0.816841!10490-107B4;0.867802!10439-106E7;0.567607!10022-101D4;0.965438!10176-103C5;0.290273!10469-106I1;0.936796!10067-101I4;0.445983!10411-106B6;0.114612!10471-106I3;0.196775!10030-101E3;0.16506!10475-106I7;0.136969!10787-110H4;0.91006!10477-106I9;0.845594!10695-109G2;0.393328!11771-123I7;0.15822!11772-123I8;0.151671!11773-123I9;0.303348!10093-102C3;0.627515!10442-106F1;0.144353!10442-106F1;0.48379!10201-103F3;0.54071!10639-108I9;0.711058!11843-124H7;0.528324!11841-124H5;0.458444!10693-109F9;0.99948!10436-106E4;0.808563!10483-107A6;0.219096!10282-104F3;0.797605!10023-101D5;0.0308027!10066-101I3;0.0523181!10065-101I2;0.00771287!10800-110I8;0.117168!10610-108F7;0.815271!10841-111E4;0.349235!10541-107H1;0.60547!10842-111E5;0.476001!10562-108A4;0.548157!10024-101D6;0.0244487!10064-101I1;0.911031!10609-108F6;0.679008!10048-101G3;0.267418!10781-110G7;0.468474!10181-103D1;0.758075!10159-103A6;0.885097!10056-101H2;0.840771!10737-110B8;0.268024!10025-101D7;0.661456!10044-101F8;0.599209!10424-106D1;0.0327559!10463-106H4;0.450833!10616-108G4;0.960949!10486-107A9;0.46079!10062-101H8;0.334252!10202-103F4;0.0746889!10158-103A5;0.168452!10441-106E9;0.827655!10031-101E4;0.0635481!10063-101H9;0.959479!10063-101H9;0.122994!11763-123H8;0.493265!11765-123I1;0.766349!11768-123I4;0.281558!10807-111A6;0.680321!10790-110H7;0.780026!10798-110I6;0.431702!10786-110H3;0.681372!10591-108D6;0.886279!10593-108D8;0.983494!10590-108D5;0.656328!10026-101D8;0.611815!10096-102C6;0.290841!10168-103B6;0.00220523!10154-103A1;0.803787!10209-103G2;0.866452!10061-101H7;0.0249193!10027-101D9;0.060554!10043-101F7;0.999999!10783-110G9;0.249542!10028-101E1;0.297702!10060-101H6;0.716289!10203-103F5;0.199639!10059-101H5;0.0824704!10047-101G2;0.051351!10029-101E2;0.171566!10058-101H4;0.325191!10418-106C4;0.1364!10492-107B6;0.0540183!10694-109G1;0.734217!10797-110I5;0.0250523!10057-101H3;0.590068!10100-102D1;0.313667!10055-101H1;0.383862!10204-103F6;0.402309!10191-103E2;0.152801!10563-108A5;0.244531
|name=5-CGTCTGATA,CNhs11888,BestGuess:GATA4_f1_HM09(0.724258531733217),T:591.0(33.18%),B:10117.5(21.85%),P:1e-27
|name=5-CGTCTGATA,CNhs11888,BestGuess:GATA4_f1_HM09(0.724258531733217),T:591.0(33.18%),B:10117.5(21.85%),P:1e-27
|tomtom_result=Tal1::Gata1#MA0140.1;7;0.00141567;0.673859;0.764092;9;CGTCTGATA;CTGGTGGGGACAGATAAG;+!YAP6#MA0418.1;0;0.00262814;1.25099;0.764092;9;CGTCTGATA;GGTCTGATTACGTAAGCGAC;+!Optix#MA0199.1;-4;0.00276321;1.31529;0.764092;5;CGTCTGATA;TGATA;+!HAP4#MA0315.1;3;0.00321047;1.52818;0.764092;9;CGTCTGATA;TCGCCTCTGATTGGT;-!GATA3#MA0037.1;-4;0.0125558;5.97657;1;5;CGTCTGATA;AGATAG;+!GAT1#MA0300.1;-3;0.012567;5.9819;1;6;CGTCTGATA;CCGATAAG;+!HAP5#MA0316.1;3;0.0153036;7.2845;1;9;CGTCTGATA;TGGGATCTGATTGGT;+!so#MA0246.1;-4;0.0168656;8.02802;1;5;CGTCTGATA;TGATAC;+!FZF1#MA0298.1;-4;0.0168656;8.02802;1;5;CGTCTGATA;TGATAG;-!Gata1#MA0035.2;-2;0.0208214;9.91097;1;7;CGTCTGATA;ACAGATAAGAA;+
}}
}}

Latest revision as of 14:30, 7 September 2012

Full Name: 5-CGTCTGATA,CNhs11888,BestGuess:GATA4_f1_HM09(0.724258531733217),T:591.0(33.18%),B:10117.5(21.85%),P:1e-27

Motif matrix
POACGT
154.372366.42138.88531.323
254.96349.053420.79266.192
334.27895.742167.253293.136
40.591439.70485.69565.01
5202.71333.0962.364352.827
689.83221.276413.766.192
7473.98212.4110.591104.016
888.05927.18642.552433.203
9427.2930.5910.591162.525

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Tal1::Gata1#MA0140.170.001415670.6738590.7640929CGTCTGATACTGGTGGGGACAGATAAG+
YAP6#MA0418.100.002628141.250990.7640929CGTCTGATAGGTCTGATTACGTAAGCGAC+
Optix#MA0199.1-40.002763211.315290.7640925CGTCTGATATGATA+
HAP4#MA0315.130.003210471.528180.7640929CGTCTGATATCGCCTCTGATTGGT-
GATA3#MA0037.1-40.01255585.9765715CGTCTGATAAGATAG+
GAT1#MA0300.1-30.0125675.981916CGTCTGATACCGATAAG+
HAP5#MA0316.130.01530367.284519CGTCTGATATGGGATCTGATTGGT+
so#MA0246.1-40.01686568.0280215CGTCTGATATGATAC+
FZF1#MA0298.1-40.01686568.0280215CGTCTGATATGATAG-
Gata1#MA0035.2-20.02082149.9109717CGTCTGATAACAGATAAGAA+
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