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MacroAPE 1083:8-GAATGAAAGCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;8.125;83.75;481.25;51.875!2;549.375;30.0;0.625;45.0!3;465.0;71.875;87.5;0.625!4;38.75;10.625;25.0;550.625!5;8.125;10.625;600.0;6.25!6;541.25...")
 
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56721!12179-129A1;0.89367!12180-129A2;0.00118893!12181-129A3;0.00301981!12176-128I7;0.00167177!12177-128I8;0.000974987!12182-129A4;0.000438702!12183-129A5;0.00124567!12184-129A6;0.00110601!10809-111A8;0.00297939!10597-108E3;0.383869!10717-109I6;0.984773!10455-106G5;0.393918!10534-107G3;0.412854!10429-106D6;0.34049!10464-106H5;0.136442!10827-111C8;0.239003!10789-110H6;0.194986!10828-111C9;0.063883!10788-110H5;0.407481!10792-110H9;0.0628317!10765-110E9;0.0260742!10829-111D1;0.0271444!10830-111D2;0.0518853!10831-111D3;0.090315!10832-111D4;0.157394!10833-111D5;0.117045!10764-110E8;0.0434506!10770-110F5;0.00744673!10399-106A3;0.196347!10400-106A4;0.0734799!10405-106A9;0.0621272!10834-111D6;0.0830881!10835-111D7;0.0509122!10836-111D8;0.473544!10837-111D9;0.590816!10699-109G6;0.426355!10802-111A1;0.226058!10796-110I4;0.147919!10010-101C1;0.281264!10810-111A9;0.478411!10421-106C7;0.941708!10708-109H6;0.541302!12235-129G3;0.839964!12236-129G4;0.137483!12237-129G5;0.969132!10167-103B5;0.130929!10151-102I7;0.123023!10428-106D5;0.113039!10795-110I3;0.000263648!10805-111A4;0.0975775!10052-101G7;0.659658!10189-103D9;0.0998588!10589-108D4;0.356064!10425-106D2;0.200045!10427-106D4;0.13881!10702-109G9;0.386485!10432-106D9;0.472944!10496-107C1;0.80234!10718-109I7;0.552951!10011-101C2;0.0204881!10053-101G8;0.141766!10686-109F2;0.0038756!10084-102B3;0.491615!10012-101C3;0.276423!10085-102B4;0.286118!10482-107A5;0.11062!10419-106C5;0.809755!10080-102A8;0.554378!10760-110E4;0.148202!10709-109H7;0.172429!10710-109H8;0.944186!10703-109H1;0.980636!10719-109I8;0.44997!10642-109A3;0.490005!10177-103C6;0.0616111!10164-103B2;0.384749!10173-103C2;0.343053!10166-103B4;0.208957!10083-102B2;0.184908!10188-103D8;0.230226!10552-107I3;0.0824778!10553-107I4;0.0216701!10013-101C4;0.468043!10536-107G5;0.213598!10618-108G6;0.707801!10423-106C9;0.360996!10785-110H2;0.260245!12238-129G6;0.0175533!12239-129G7;0.602361!12240-129G8;0.208304!10416-106C2;0.965114!10801-110I9;0.402995!10766-110F1;0.145207!10824-111C5;0.0575293!10825-111C6;0.454639!10826-111C7;0.385172!10454-106G4;0.396842!10409-106B4;0.340944!10638-108I8;0.0305646!10636-108I6;0.877915!10513-107D9;0.880347!10420-106C6;0.274397!10082-102B1;0.160152!10014-101C5;0.25373!10070-101I7;0.525821!10452-106G2;0.141574!10453-106G3;0.792011!10449-106F8;0.826089!10042-101F6;0.829692!10069-101I6;0.345352!10193-103E4;0.254482!10631-108I1;0.230321!10438-106E6;0.182077!10488-107B2;0.914305!10196-103E7;0.967131!10071-101I8;0.355092!10071-101I8;0.150197!10041-101F5;0.0508391!10451-106G1;0.415923!10450-106F9;0.78564!10604-108F1;0.773962!10605-108F2;0.526341!10606-108F3;0.577665!10603-108E9;0.698161!10497-107C2;0.744254!10448-106F7;0.63173!10643-109A4;0.522495!10426-106D3;0.278613!10431-106D8;0.501101!10197-103E8;0.357423!10443-106F2;0.479167!10815-111B5;0.107031!10816-111B6;0.0363121!10817-111B7;0.038314!10015-101C6;0.0226485!10410-106B5;0.39724!10054-101G9;0.112716!10758-110E2;0.031836!10711-109H9;0.421206!10040-101F4;0.190774!10470-106I2;0.250805!10415-106C1;0.505714!10198-103E9;0.59076!10614-108G2;0.0762686!10612-108F9;0.581011!10549-107H9;0.50777!10615-108G3;0.743461!10487-107B1;0.748647!10433-106E1;0.132848!10688-109F4;0.587919!10444-106F3;0.152683!10444-106F3;0.523945!10485-107A8;0.631824!10413-106B8;0.430794!10175-103C4;0.957926!10161-103A8;0.338867!12131-128D7;0.307204!10624-108H3;0.00587763!10712-109I1;0.00393948!10205-103F7;0.25044!10206-103F8;0.116707!10207-103F9;0.297729!10050-101G5;0.250854!10051-101G6;0.791919!10016-101C7;0.608428!10046-101G1;0.527261!10778-110G4;0.171703!10633-108I3;0.0471644!10818-111B8;0.692951!10819-111B9;0.234762!10820-111C1;0.187825!10484-107A7;0.183567!10808-111A7;0.953104!10169-103B7;0.36467!10153-102I9;0.124447!13425-144D5;0.108753!13433-144E4;0.281047!13437-144E8;0.257253!11904-125F5;0.272226!11905-125F6;0.0221958!10039-101F3;0.12818!10791-110H8;0.170415!10017-101C8;0.0521068!10045-101F9;0.319709!10509-107D5;0.0578021!10839-111E2;0.532794!10692-109F8;0.501604!10079-102A7;0.663077!10078-102A6;0.199944!10721-110A1;0.83218!10569-108B2;0.375078!10570-108B3;0.018656!10571-108B4;0.0329288!10647-109A8;0.00801826!10752-110D5;0.161203!10782-110G8;0.467468!10726-110A6;0.143415!10018-101C9;0.0172111!10086-102B5;0.0302856!10182-103D2;0.0826037!10165-103B3;0.131954!10499-107C4;0.116137!10408-106B3;0.412578!10019-101D1;0.95213!10068-101I5;0.482931!10075-102A3;0.27892!10077-102A5;0.383423!10727-110A7;0.769907!10775-110G1;0.287584!10412-106B7;0.0969097!12231-129F8;0.749889!12232-129F9;0.863561!12233-129G1;0.953618!12234-129G2;0.775833!10414-106B9;0.485842!10170-103B8;0.171798!10183-103D3;0.232673!10150-102I6;0.177092!10174-103C3;0.278269!10155-103A2;0.189579!10038-101F2;0.123701!10838-111E1;0.155318!10759-110E3;0.38033!10514-107E1;0.171291!10465-106H6;0.492519!10691-109F7;0.49885!10843-111E6;0.47631!10844-111E7;0.615367!11747-123G1;0.099744!11748-123G2;0.419638!11749-123G3;0.12934!11750-123G4;0.223066!11751-123G5;0.134545!11840-124H4;0.0334983!11752-123G6;0.268677!11753-123G7;0.220747!11754-123G8;0.0234647!11755-123G9;0.0660761!11756-123H1;0.144069!11833-124G6;0.0684409!11760-123H5;0.347299!11836-124G9;0.0110984!11758-123H3;0.0271122!11835-124G8;0.0281166!11762-123H7;0.00931665!11838-124H2;0.464644!11757-123H2;0.117882!11759-123H4;0.120658!11761-123H6;0.075873!11842-124H6;0.108792!11837-124H1;0.000475587!10568-108B1;0.0221582!13230-141I8;0.14963!13231-141I9;0.307993!10696-109G3;0.147755!10493-107B7;0.400303!10494-107B8;0.956107!10850-111F4;0.907209!10851-111F5;0.048824!10852-111F6;0.811639!10853-111F7;0.302507!10854-111F8;0.984757!10855-111F9;0.124617!10856-111G1;0.599063!10847-111F1;0.777795!10846-111E9;0.095287!10848-111F2;0.907401!10845-111E8;0.901428!10857-111G2;0.641567!10858-111G3;0.952834!10156-103A3;0.402817!11901-125F2;0.164346!11902-125F3;0.0934127!11903-125F4;0.0226595!10689-109F5;0.0334632!10648-109A9;0.824992!10784-110H1;0.321916!10744-110C6;0.896333!10772-110F7;0.675079!10474-106I6;0.063293!10600-108E6;0.0948257!10684-109E9;0.071591!12226-129F3;0.95424!12227-129F4;0.444172!10508-107D4;0.124656!10539-107G8;0.469399!10607-108F4;0.00674317!10555-107I6;0.80097!10774-110F9;0.182634!10637-108I7;0.625357!10663-109C6;0.523663!10728-110A8;0.911119!10729-110A9;0.950019!10430-106D7;0.307472!10730-110B1;0.546964!10813-111B3;0.146297!10812-111B2;0.366262!10037-101F1;0.714411!10172-103C1;0.284024!10163-103B1;0.41644!10076-102A4;0.181317!10073-102A1;0.222832!10036-101E9;0.140491!10195-103E6;0.265001!10277-104E7;0.200783!10434-106E2;0.220741!10550-107I1;0.429047!10545-107H5;0.609548!10544-107H4;0.116769!10704-109H2;0.128951!10510-107D6;0.759529!10558-107I9;0.185015!10020-101D2;0.471168!10732-110B3;0.0667035!10049-101G4;0.543525!10698-109G5;0.235882!10437-106E5;0.178166!10417-106C3;0.677344!10035-101E8;0.947375!10171-103B9;0.216971!10157-103A4;0.179231!10034-101E7;0.191817!10072-101I9;0.210673!10199-103F1;0.10808!10200-103F2;0.666946!10697-109G4;0.475426!10723-110A3;0.609314!10179-103C8;0.813325!10160-103A7;0.0681962!10180-103C9;0.171461!10162-103A9;0.306431!10021-101D3;0.430605!10840-111E3;0.626633!10706-109H4;0.737076!10033-101E6;0.916762!10032-101E5;0.219696!10490-107B4;0.202918!10439-106E7;0.207248!10022-101D4;0.950361!10176-103C5;0.168292!10469-106I1;0.468916!10067-101I4;0.569955!10411-106B6;0.0430234!10471-106I3;0.604354!10030-101E3;0.190342!10475-106I7;0.0305044!10787-110H4;0.686469!10477-106I9;0.525132!10695-109G2;0.307611!11771-123I7;0.0246913!11772-123I8;0.899092!11773-123I9;0.700104!10093-102C3;0.605534!10442-106F1;0.436512!10442-106F1;0.116638!10201-103F3;0.0840975!10639-108I9;0.203701!11843-124H7;0.299628!11841-124H5;0.196104!10693-109F9;0.376743!10436-106E4;0.6944!10483-107A6;0.794049!10282-104F3;0.116058!10023-101D5;0.715776!10066-101I3;0.898838!10065-101I2;0.540676!10800-110I8;0.437837!10610-108F7;0.120159!10841-111E4;0.0843993!10541-107H1;0.972534!10842-111E5;0.495995!10562-108A4;0.900569!10024-101D6;0.0529666!10064-101I1;0.658168!10609-108F6;0.102421!10048-101G3;0.067686!10781-110G7;0.168122!10181-103D1;0.00704028!10159-103A6;0.150973!10056-101H2;0.223635!10737-110B8;0.0798626!10025-101D7;0.812305!10044-101F8;0.824959!10424-106D1;0.539359!10463-106H4;0.159167!10616-108G4;0.266692!10486-107A9;0.37567!10062-101H8;0.201281!10202-103F4;0.0977675!10158-103A5;0.838289!10441-106E9;0.227726!10031-101E4;0.0131624!10063-101H9;0.168892!10063-101H9;0.10876!11763-123H8;0.0213733!11765-123I1;0.446756!11768-123I4;0.96967!10807-111A6;0.927035!10790-110H7;0.849442!10798-110I6;0.60245!10786-110H3;0.296314!10591-108D6;0.905493!10593-108D8;0.867773!10590-108D5;0.988842!10026-101D8;0.501742!10096-102C6;0.875414!10168-103B6;0.629638!10154-103A1;0.194813!10209-103G2;0.378523!10061-101H7;0.70714!10027-101D9;0.25481!10043-101F7;0.356667!10783-110G9;0.827222!10028-101E1;0.0583604!10060-101H6;0.599513!10203-103F5;0.421785!10059-101H5;0.528021!10047-101G2;0.399466!10029-101E2;0.74235!10058-101H4;0.550427!10418-106C4;0.202618!10492-107B6;0.11777!10694-109G1;0.917289!10797-110I5;0.00063186!10057-101H3;0.341394!10100-102D1;0.671734!10055-101H1;0.121174!10204-103F6;0.0619909!10191-103E2;0.153585!10563-108A5;0.21437
|name=8-GAATGAAAGCG,CNhs12321,BestGuess:IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer(0.729435679472577),T:625.0(14.99%),B:4228.3(9.60%),P:1e-27
|name=8-GAATGAAAGCG,CNhs12321,BestGuess:IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer(0.729435679472577),T:625.0(14.99%),B:4228.3(9.60%),P:1e-27
|tomtom_result=Dof3#MA0021.1;-5;0.00291609;1.38806;1;6;GAATGAAAGCG;AAAGCG;+!MNB1A#MA0053.1;-5;0.00325778;1.5507;1;5;GAATGAAAGCG;AAAGC;+!PBF#MA0064.1;-5;0.00419792;1.99821;1;5;GAATGAAAGCG;AAAGC;+!Dof2#MA0020.1;-5;0.00763833;3.63584;1;6;GAATGAAAGCG;AAAGCA;+!IRF2#MA0051.1;3;0.00853683;4.06353;1;11;GAATGAAAGCG;GGAAAGCGAAACCAAAAC;+!IRF1#MA0050.1;2;0.00994415;4.73342;1;10;GAATGAAAGCG;GAAAGCGAAACC;+!STAT1#MA0137.1;3;0.0115579;5.50157;1;11;GAATGAAAGCG;GGAAAACGAAACTG;+!achi#MA0207.1;-3;0.0136761;6.50984;1;6;GAATGAAAGCG;TGACAG;+!HAP5#MA0316.1;2;0.0143146;6.81377;1;11;GAATGAAAGCG;ACCAATCAGATCCCA;-!GCR2#MA0305.1;-3;0.0144968;6.90047;1;7;GAATGAAAGCG;AGGAAGC;-!hth#MA0227.1;-3;0.0150427;7.16031;1;6;GAATGAAAGCG;TGACAG;+!Ddit3::Cebpa#MA0019.1;0;0.0170519;8.11672;1;11;GAATGAAAGCG;AGATGCAATCCC;+!vis#MA0252.1;-3;0.019144;9.11254;1;6;GAATGAAAGCG;TGACAG;+
}}
}}

Latest revision as of 14:35, 7 September 2012

Full Name: 8-GAATGAAAGCG,CNhs12321,BestGuess:IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer(0.729435679472577),T:625.0(14.99%),B:4228.3(9.60%),P:1e-27

Motif matrix
POACGT
18.12583.75481.2551.875
2549.37530.00.62545.0
3465.071.87587.50.625
438.7510.62525.0550.625
58.12510.625600.06.25
6541.2543.7539.3750.625
7460.073.7566.2525.0
8560.015.018.7531.25
915.023.75481.25105.0
1060.625485.011.87567.5
11123.7530.625455.62515.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Dof3#MA0021.1-50.002916091.3880616GAATGAAAGCGAAAGCG+
MNB1A#MA0053.1-50.003257781.550715GAATGAAAGCGAAAGC+
PBF#MA0064.1-50.004197921.9982115GAATGAAAGCGAAAGC+
Dof2#MA0020.1-50.007638333.6358416GAATGAAAGCGAAAGCA+
IRF2#MA0051.130.008536834.06353111GAATGAAAGCGGGAAAGCGAAACCAAAAC+
IRF1#MA0050.120.009944154.73342110GAATGAAAGCGGAAAGCGAAACC+
STAT1#MA0137.130.01155795.50157111GAATGAAAGCGGGAAAACGAAACTG+
achi#MA0207.1-30.01367616.5098416GAATGAAAGCGTGACAG+
HAP5#MA0316.120.01431466.81377111GAATGAAAGCGACCAATCAGATCCCA-
GCR2#MA0305.1-30.01449686.9004717GAATGAAAGCGAGGAAGC-
hth#MA0227.1-30.01504277.1603116GAATGAAAGCGTGACAG+
Ddit3::Cebpa#MA0019.100.01705198.11672111GAATGAAAGCGAGATGCAATCCC+
vis#MA0252.1-30.0191449.1125416GAATGAAAGCGTGACAG+
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