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MacroAPE 1083:3-AAACYGGTTTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;117.502;14.476;21.868;0.154!2;151.228;0.154;2.464;0.154!3;140.91;0.154;12.782;0.154!4;0.154;153.538;0.154;0.154!5;10.626;78.386;0.154;64.834...")
 
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43!10534-107G3;0.93788!10429-106D6;0.994429!10464-106H5;0.321622!10827-111C8;0.254437!10789-110H6;0.412404!10828-111C9;0.80692!10788-110H5;0.71491!10792-110H9;0.340826!10765-110E9;0.474999!10829-111D1;0.998312!10830-111D2;0.722169!10831-111D3;0.593016!10832-111D4;0.911747!10833-111D5;0.915835!10764-110E8;0.773481!10770-110F5;0.369386!10399-106A3;0.766076!10400-106A4;0.123365!10405-106A9;0.0271113!10834-111D6;0.0443986!10835-111D7;0.15145!10836-111D8;0.146937!10837-111D9;0.248401!10699-109G6;0.0479535!10802-111A1;0.694254!10796-110I4;0.312732!10010-101C1;0.0254874!10810-111A9;0.79218!10421-106C7;0.446534!10708-109H6;0.335284!12235-129G3;0.717281!12236-129G4;0.0362738!12237-129G5;0.0770381!10167-103B5;0.0352037!10151-102I7;0.406345!10428-106D5;0.472315!10795-110I3;0.148946!10805-111A4;0.0115259!10052-101G7;0.891161!10189-103D9;0.0633!10589-108D4;0.407027!10425-106D2;0.175037!10427-106D4;0.813091!10702-109G9;0.763708!10432-106D9;0.76101!10496-107C1;0.0296734!10718-109I7;0.0920286!10011-101C2;0.877425!10053-101G8;0.225211!10686-109F2;0.457595!10084-102B3;0.0407486!10012-101C3;0.579447!10085-102B4;0.440873!10482-107A5;0.347077!10419-106C5;0.429618!10080-102A8;0.0759138!10760-110E4;0.344091!10709-109H7;3.07182e-05!10710-109H8;0.00194552!10703-109H1;0.0451136!10719-109I8;0.138173!10642-109A3;0.0110657!10177-103C6;0.0481133!10164-103B2;0.445761!10173-103C2;0.691575!10166-103B4;0.339965!10083-102B2;0.432781!10188-103D8;0.582646!10552-107I3;0.754072!10553-107I4;0.682836!10013-101C4;1.08204e-09!10536-107G5;0.0211732!10618-108G6;0.0118504!10423-106C9;0.741664!10785-110H2;0.424329!12238-129G6;0.570213!12239-129G7;0.368375!12240-129G8;0.483355!10416-106C2;0.340533!10801-110I9;0.103198!10766-110F1;0.507771!10824-111C5;0.37805!10825-111C6;0.393833!10826-111C7;0.35252!10454-106G4;0.440277!10409-106B4;0.37824!10638-108I8;0.224827!10636-108I6;0.447808!10513-107D9;0.0947356!10420-106C6;0.0172859!10082-102B1;0.189733!10014-101C5;0.588059!10070-101I7;0.23153!10452-106G2;0.0708397!10453-106G3;0.489805!10449-106F8;0.491529!10042-101F6;0.469533!10069-101I6;0.652025!10193-103E4;0.581915!10631-108I1;0.29403!10438-106E6;0.894876!10488-107B2;1.13503e-08!10196-103E7;0.483361!10071-101I8;0.438314!10071-101I8;0.0155822!10041-101F5;0.758356!10451-106G1;0.524982!10450-106F9;0.0585228!10604-108F1;0.0881484!10605-108F2;0.669171!10606-108F3;0.940687!10603-108E9;0.880123!10497-107C2;0.229523!10448-106F7;0.410561!10643-109A4;0.420145!10426-106D3;0.0185715!10431-106D8;3.18072e-08!10197-103E8;0.00238016!10443-106F2;0.595803!10815-111B5;0.947448!10816-111B6;0.893479!10817-111B7;0.577167!10015-101C6;0.987157!10410-106B5;0.000338519!10054-101G9;0.442901!10758-110E2;0.360568!10711-109H9;0.454339!10040-101F4;0.341476!10470-106I2;0.485125!10415-106C1;0.00444686!10198-103E9;0.12708!10614-108G2;0.134742!10612-108F9;0.946199!10549-107H9;0.258003!10615-108G3;0.779214!10487-107B1;0.4149!10433-106E1;0.923329!10688-109F4;0.777692!10444-106F3;1.00382e-06!10444-106F3;0.64447!10485-107A8;0.567868!10413-106B8;0.591177!10175-103C4;0.0459103!10161-103A8;0.184762!12131-128D7;0.189137!10624-108H3;0.720902!10712-109I1;0.437952!10205-103F7;0.289436!10206-103F8;0.430078!10207-103F9;0.619845!10050-101G5;0.447697!10051-101G6;0.0993212!10016-101C7;0.486695!10046-101G1;0.293358!10778-110G4;0.629539!10633-108I3;0.252643!10818-111B8;0.835447!10819-111B9;0.277505!10820-111C1;0.255405!10484-107A7;0.282797!10808-111A7;0.636179!10169-103B7;0.479554!10153-102I9;0.546394!13425-144D5;0.515156!13433-144E4;0.83638!13437-144E8;0.466363!11904-125F5;0.759141!11905-125F6;0.020683!10039-101F3;0.000182277!10791-110H8;0.432342!10017-101C8;0.000297266!10045-101F9;0.0900916!10509-107D5;0.0215702!10839-111E2;0.680511!10692-109F8;0.292067!10079-102A7;0.137618!10078-102A6;0.401129!10721-110A1;0.482439!10569-108B2;0.0316548!10570-108B3;0.941893!10571-108B4;0.806727!10647-109A8;0.971702!10752-110D5;0.208983!10782-110G8;0.545003!10726-110A6;0.0589885!10018-101C9;0.0851839!10086-102B5;0.353998!10182-103D2;0.568092!10165-103B3;0.30289!10499-107C4;0.228238!10408-106B3;0.580303!10019-101D1;0.00855358!10068-101I5;0.0208531!10075-102A3;0.0273018!10077-102A5;0.0376653!10727-110A7;0.672722!10775-110G1;0.67024!10412-106B7;0.841589!12231-129F8;5.459e-08!12232-129F9;0.513961!12233-129G1;0.735865!12234-129G2;0.918589!10414-106B9;0.405305!10170-103B8;0.0545101!10183-103D3;0.224935!10150-102I6;0.307058!10174-103C3;0.269733!10155-103A2;0.901634!10038-101F2;0.831652!10838-111E1;0.738737!10759-110E3;0.54903!10514-107E1;0.342483!10465-106H6;0.357381!10691-109F7;0.146082!10843-111E6;0.959008!10844-111E7;0.377688!11747-123G1;0.95218!11748-123G2;0.25591!11749-123G3;0.472!11750-123G4;0.386637!11751-123G5;0.595791!11840-124H4;0.425851!11752-123G6;0.345804!11753-123G7;0.424327!11754-123G8;0.151203!11755-123G9;0.107867!11756-123H1;0.145997!11833-124G6;0.260535!11760-123H5;0.019238!11836-124G9;0.46393!11758-123H3;0.275113!11835-124G8;0.0516692!11762-123H7;0.556608!11838-124H2;0.412103!11757-123H2;0.901971!11759-123H4;0.441116!11761-123H6;0.0284021!11842-124H6;0.764271!11837-124H1;0.273204!10568-108B1;0.480222!13230-141I8;0.11023!13231-141I9;0.555608!10696-109G3;0.278441!10493-107B7;0.513019!10494-107B8;0.210651!10850-111F4;0.238458!10851-111F5;0.952683!10852-111F6;0.546409!10853-111F7;0.325372!10854-111F8;0.427489!10855-111F9;0.952824!10856-111G1;0.0964376!10847-111F1;0.678475!10846-111E9;0.471659!10848-111F2;0.317157!10845-111E8;0.562662!10857-111G2;0.678954!10858-111G3;0.653665!10156-103A3;0.270096!11901-125F2;0.239741!11902-125F3;0.49662!11903-125F4;0.527133!10689-109F5;0.254237!10648-109A9;0.164606!10784-110H1;0.450693!10744-110C6;0.0315229!10772-110F7;0.367667!10474-106I6;0.961371!10600-108E6;0.919801!10684-109E9;0.163217!12226-129F3;0.0147135!12227-129F4;4.14635e-09!10508-107D4;0.0140407!10539-107G8;0.182617!10607-108F4;0.920812!10555-107I6;0.0617675!10774-110F9;0.160631!10637-108I7;0.0493039!10663-109C6;0.699698!10728-110A8;0.104719!10729-110A9;0.0285878!10430-106D7;0.54415!10730-110B1;0.719406!10813-111B3;0.534366!10812-111B2;0.158035!10037-101F1;0.816901!10172-103C1;0.589671!10163-103B1;0.151545!10076-102A4;0.214582!10073-102A1;0.354253!10036-101E9;0.726546!10195-103E6;0.328861!10277-104E7;0.386473!10434-106E2;0.369988!10550-107I1;0.02205!10545-107H5;0.12861!10544-107H4;4.93589e-06!10704-109H2;0.022659!10510-107D6;0.508292!10558-107I9;0.813807!10020-101D2;0.00943242!10732-110B3;0.928218!10049-101G4;0.0470211!10698-109G5;0.42576!10437-106E5;0.737045!10417-106C3;0.122629!10035-101E8;0.0034308!10171-103B9;0.381094!10157-103A4;0.185769!10034-101E7;0.25317!10072-101I9;0.39698!10199-103F1;0.875317!10200-103F2;0.0276593!10697-109G4;0.502472!10723-110A3;0.0732557!10179-103C8;1.9235e-05!10160-103A7;0.880434!10180-103C9;0.798447!10162-103A9;0.92773!10021-101D3;0.903068!10840-111E3;0.300438!10706-109H4;0.37904!10033-101E6;0.10954!10032-101E5;0.391358!10490-107B4;0.388054!10439-106E7;0.982161!10022-101D4;0.0887635!10176-103C5;0.0210788!10469-106I1;0.432246!10067-101I4;0.0590758!10411-106B6;0.489945!10471-106I3;0.582038!10030-101E3;0.180206!10475-106I7;0.383329!10787-110H4;0.145817!10477-106I9;0.0348459!10695-109G2;0.349294!11771-123I7;0.315935!11772-123I8;0.127571!11773-123I9;0.138687!10093-102C3;0.0584431!10442-106F1;0.00916461!10442-106F1;0.446339!10201-103F3;0.405816!10639-108I9;0.323417!11843-124H7;0.00715966!11841-124H5;0.0074465!10693-109F9;0.0207121!10436-106E4;0.855718!10483-107A6;0.109703!10282-104F3;0.0879886!10023-101D5;0.040417!10066-101I3;0.179148!10065-101I2;0.877122!10800-110I8;0.00711447!10610-108F7;0.27849!10841-111E4;0.671138!10541-107H1;0.00108819!10842-111E5;0.036203!10562-108A4;0.209114!10024-101D6;0.746824!10064-101I1;0.0401421!10609-108F6;0.0771408!10048-101G3;0.959823!10781-110G7;0.763471!10181-103D1;0.669551!10159-103A6;0.696372!10056-101H2;0.542615!10737-110B8;0.719988!10025-101D7;0.877043!10044-101F8;0.763549!10424-106D1;0.486759!10463-106H4;0.9772!10616-108G4;1.26448e-05!10486-107A9;0.0115253!10062-101H8;0.0704723!10202-103F4;0.41062!10158-103A5;0.0643351!10441-106E9;0.354179!10031-101E4;0.844657!10063-101H9;0.401588!10063-101H9;0.865928!11763-123H8;0.175815!11765-123I1;0.859677!11768-123I4;0.84681!10807-111A6;0.891583!10790-110H7;0.508246!10798-110I6;0.941571!10786-110H3;0.627568!10591-108D6;0.480278!10593-108D8;0.48996!10590-108D5;0.617871!10026-101D8;0.513146!10096-102C6;0.690296!10168-103B6;0.719967!10154-103A1;0.187169!10209-103G2;0.200517!10061-101H7;0.017327!10027-101D9;0.0743756!10043-101F7;0.135253!10783-110G9;0.0943191!10028-101E1;0.901524!10060-101H6;0.303979!10203-103F5;0.152808!10059-101H5;0.00559182!10047-101G2;0.0196267!10029-101E2;1.42091e-07!10058-101H4;4.35391e-05!10418-106C4;0.0203697!10492-107B6;0.00247656!10694-109G1;0.744119!10797-110I5;0.0163771!10057-101H3;0.37378!10100-102D1;0.466789!10055-101H1;0.611417!10204-103F6;0.0194809!10191-103E2;0.403049!10563-108A5;0.442069
|name=3-AAACYGGTTTG,CNhs11289,BestGuess:MYBL2.p2.SwissRegulon.nucfreq(0.606801607710541),T:154.0(9.51%),B:1518.4(3.20%),P:1e-31
|name=3-AAACYGGTTTG,CNhs11289,BestGuess:MYBL2.p2.SwissRegulon.nucfreq(0.606801607710541),T:154.0(9.51%),B:1518.4(3.20%),P:1e-31
|tomtom_result=myb.Ph3#MA0054.1;0;0.0050463;2.40204;1;9;AAACCGGTTTG;TAACCGTTT;+!Kr#MA0452.1;0;0.00703593;3.3491;1;11;AAACCGGTTTG;TAACCCTTTTG;-
}}
}}

Latest revision as of 14:52, 7 September 2012

Full Name: 3-AAACYGGTTTG,CNhs11289,BestGuess:MYBL2.p2.SwissRegulon.nucfreq(0.606801607710541),T:154.0(9.51%),B:1518.4(3.20%),P:1e-31

Motif matrix
POACGT
1117.50214.47621.8680.154
2151.2280.1542.4640.154
3140.910.15412.7820.154
40.154153.5380.1540.154
510.62678.3860.15464.834
615.5540.15492.86245.43
711.550.154142.1420.154
80.1545.0829.702139.062
96.9338.9620.154107.954
1015.0920.15447.7491.014
110.15416.17129.0528.624

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
myb.Ph3#MA0054.100.00504632.4020419AAACCGGTTTGTAACCGTTT+
Kr#MA0452.100.007035933.3491111AAACCGGTTTGTAACCCTTTTG-
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