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MacroAPE 1083:5-GGTGRTTDTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.718;616.762;951.772;147.748!2;350.472;243.956;1015.338;108.234!3;414.038;1.718;429.5;872.744!4;1.718;1.718;1168.24;546.324!5;670.02;175.23...")
 
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51!10828-111C9;0.427204!10788-110H5;0.380673!10792-110H9;0.419692!10765-110E9;0.262463!10829-111D1;0.801085!10830-111D2;0.240277!10831-111D3;0.57259!10832-111D4;0.87767!10833-111D5;0.690593!10764-110E8;0.532308!10770-110F5;0.352076!10399-106A3;0.188286!10400-106A4;0.281196!10405-106A9;0.165874!10834-111D6;0.151645!10835-111D7;0.151182!10836-111D8;0.0928296!10837-111D9;0.274422!10699-109G6;0.179179!10802-111A1;0.121411!10796-110I4;0.240381!10010-101C1;0.201065!10810-111A9;0.439016!10421-106C7;0.377968!10708-109H6;0.24455!12235-129G3;0.916247!12236-129G4;0.692028!12237-129G5;0.105083!10167-103B5;0.753328!10151-102I7;0.237722!10428-106D5;0.461475!10795-110I3;0.402124!10805-111A4;0.729641!10052-101G7;0.757638!10189-103D9;0.341426!10589-108D4;0.728628!10425-106D2;0.517879!10427-106D4;0.0530543!10702-109G9;0.219717!10432-106D9;0.858306!10496-107C1;0.188706!10718-109I7;0.958019!10011-101C2;0.738343!10053-101G8;0.674181!10686-109F2;0.818588!10084-102B3;0.842567!10012-101C3;0.393431!10085-102B4;0.471527!10482-107A5;0.806521!10419-106C5;0.729455!10080-102A8;0.221226!10760-110E4;0.315294!10709-109H7;0.394996!10710-109H8;0.434027!10703-109H1;0.398349!10719-109I8;0.690329!10642-109A3;0.961736!10177-103C6;0.709487!10164-103B2;0.32973!10173-103C2;0.573909!10166-103B4;0.51304!10083-102B2;0.567465!10188-103D8;0.467084!10552-107I3;0.489283!10553-107I4;0.514074!10013-101C4;0.895218!10536-107G5;0.783712!10618-108G6;0.718081!10423-106C9;0.544016!10785-110H2;0.350974!12238-129G6;0.48384!12239-129G7;0.98415!12240-129G8;0.937619!10416-106C2;0.900543!10801-110I9;0.640758!10766-110F1;0.0485807!10824-111C5;0.286066!10825-111C6;0.667641!10826-111C7;0.828128!10454-106G4;0.805866!10409-106B4;0.344929!10638-108I8;0.424025!10636-108I6;0.917696!10513-107D9;0.40514!10420-106C6;0.75464!10082-102B1;0.545113!10014-101C5;0.902689!10070-101I7;0.883039!10452-106G2;0.8019!10453-106G3;0.996099!10449-106F8;0.917307!10042-101F6;0.939119!10069-101I6;0.401526!10193-103E4;0.930978!10631-108I1;0.253289!10438-106E6;0.675939!10488-107B2;0.587289!10196-103E7;0.825029!10071-101I8;0.932194!10071-101I8;0.508669!10041-101F5;0.947597!10451-106G1;0.618615!10450-106F9;0.77905!10604-108F1;0.954717!10605-108F2;0.621187!10606-108F3;0.691739!10603-108E9;0.341728!10497-107C2;0.902938!10448-106F7;0.476661!10643-109A4;0.535299!10426-106D3;0.724498!10431-106D8;0.594112!10197-103E8;0.943069!10443-106F2;0.712568!10815-111B5;0.759929!10816-111B6;0.788246!10817-111B7;0.979553!10015-101C6;0.753717!10410-106B5;0.925203!10054-101G9;0.874836!10758-110E2;0.799318!10711-109H9;0.712512!10040-101F4;0.419107!10470-106I2;0.394648!10415-106C1;0.50566!10198-103E9;0.479467!10614-108G2;0.662451!10612-108F9;0.843336!10549-107H9;0.731231!10615-108G3;0.353968!10487-107B1;0.0834642!10433-106E1;0.891387!10688-109F4;0.991606!10444-106F3;0.797987!10444-106F3;0.703232!10485-107A8;0.797468!10413-106B8;0.662808!10175-103C4;0.767942!10161-103A8;0.155671!12131-128D7;0.381676!10624-108H3;0.196539!10712-109I1;0.0831554!10205-103F7;0.635333!10206-103F8;0.645485!10207-103F9;0.620852!10050-101G5;0.505693!10051-101G6;0.557977!10016-101C7;0.471455!10046-101G1;0.594209!10778-110G4;0.853659!10633-108I3;0.873106!10818-111B8;0.429199!10819-111B9;0.849092!10820-111C1;0.832115!10484-107A7;0.835857!10808-111A7;0.346308!10169-103B7;0.390732!10153-102I9;0.324129!13425-144D5;0.507497!13433-144E4;0.755998!13437-144E8;0.865181!11904-125F5;0.656882!11905-125F6;0.627109!10039-101F3;0.259585!10791-110H8;0.438343!10017-101C8;0.565301!10045-101F9;0.521223!10509-107D5;0.41866!10839-111E2;0.63473!10692-109F8;0.0255661!10079-102A7;0.877622!10078-102A6;0.748708!10721-110A1;0.766995!10569-108B2;0.290621!10570-108B3;0.371559!10571-108B4;0.895231!10647-109A8;0.730756!10752-110D5;0.417372!10782-110G8;0.736164!10726-110A6;0.276912!10018-101C9;0.427326!10086-102B5;0.958659!10182-103D2;0.237286!10165-103B3;0.16932!10499-107C4;0.459506!10408-106B3;0.785519!10019-101D1;0.926642!10068-101I5;0.498868!10075-102A3;0.939707!10077-102A5;0.993767!10727-110A7;0.873056!10775-110G1;0.32054!10412-106B7;0.996278!12231-129F8;0.674805!12232-129F9;0.256429!12233-129G1;0.256862!12234-129G2;0.172878!10414-106B9;0.123322!10170-103B8;0.757391!10183-103D3;0.149159!10150-102I6;0.365489!10174-103C3;0.452026!10155-103A2;0.15975!10038-101F2;0.351926!10838-111E1;0.420219!10759-110E3;0.935539!10514-107E1;0.990428!10465-106H6;0.240959!10691-109F7;0.42067!10843-111E6;0.804554!10844-111E7;0.734917!11747-123G1;0.520767!11748-123G2;0.4295!11749-123G3;0.198559!11750-123G4;0.465107!11751-123G5;0.325105!11840-124H4;0.918979!11752-123G6;0.743198!11753-123G7;0.30863!11754-123G8;0.669216!11755-123G9;0.19737!11756-123H1;0.752346!11833-124G6;0.853949!11760-123H5;0.346514!11836-124G9;0.786314!11758-123H3;0.951215!11835-124G8;0.665651!11762-123H7;0.926898!11838-124H2;0.822228!11757-123H2;0.949553!11759-123H4;0.533438!11761-123H6;0.642345!11842-124H6;0.983393!11837-124H1;0.709351!10568-108B1;0.990129!13230-141I8;0.30306!13231-141I9;0.472686!10696-109G3;0.400263!10493-107B7;0.686325!10494-107B8;0.657965!10850-111F4;0.940729!10851-111F5;0.664481!10852-111F6;0.296601!10853-111F7;0.135661!10854-111F8;0.361494!10855-111F9;0.87966!10856-111G1;0.639959!10847-111F1;0.80796!10846-111E9;0.32419!10848-111F2;0.62621!10845-111E8;0.745033!10857-111G2;0.994015!10858-111G3;0.514766!10156-103A3;0.772608!11901-125F2;0.43404!11902-125F3;0.911193!11903-125F4;0.874642!10689-109F5;0.963716!10648-109A9;0.62938!10784-110H1;0.577858!10744-110C6;0.611285!10772-110F7;0.283716!10474-106I6;0.611567!10600-108E6;0.330128!10684-109E9;0.0227643!12226-129F3;0.00506995!12227-129F4;0.336731!10508-107D4;0.545045!10539-107G8;0.881002!10607-108F4;0.852727!10555-107I6;0.955772!10774-110F9;0.929002!10637-108I7;0.949931!10663-109C6;0.507272!10728-110A8;0.759427!10729-110A9;0.719157!10430-106D7;0.895676!10730-110B1;0.635154!10813-111B3;0.745197!10812-111B2;0.533072!10037-101F1;0.963141!10172-103C1;0.454401!10163-103B1;0.278304!10076-102A4;0.462824!10073-102A1;0.293027!10036-101E9;0.911883!10195-103E6;0.424275!10277-104E7;0.437032!10434-106E2;0.571716!10550-107I1;0.780534!10545-107H5;0.531979!10544-107H4;0.541793!10704-109H2;0.791256!10510-107D6;0.570666!10558-107I9;0.440534!10020-101D2;0.675807!10732-110B3;0.632277!10049-101G4;0.762929!10698-109G5;0.206886!10437-106E5;0.201932!10417-106C3;0.28931!10035-101E8;0.486992!10171-103B9;0.31812!10157-103A4;0.275377!10034-101E7;0.347406!10072-101I9;0.390039!10199-103F1;0.6945!10200-103F2;0.857924!10697-109G4;0.387302!10723-110A3;0.671153!10179-103C8;0.899885!10160-103A7;0.753633!10180-103C9;0.879924!10162-103A9;0.337051!10021-101D3;0.287131!10840-111E3;0.340079!10706-109H4;0.372264!10033-101E6;0.63526!10032-101E5;0.174319!10490-107B4;0.359824!10439-106E7;0.888858!10022-101D4;0.466938!10176-103C5;0.729337!10469-106I1;0.359834!10067-101I4;0.777378!10411-106B6;0.725083!10471-106I3;0.864162!10030-101E3;0.601659!10475-106I7;0.971967!10787-110H4;0.764587!10477-106I9;0.803213!10695-109G2;0.686377!11771-123I7;0.370963!11772-123I8;0.457203!11773-123I9;0.341558!10093-102C3;0.375682!10442-106F1;0.495255!10442-106F1;0.0133405!10201-103F3;0.0117423!10639-108I9;0.984187!11843-124H7;0.0929533!11841-124H5;0.58597!10693-109F9;0.227157!10436-106E4;0.591334!10483-107A6;0.586256!10282-104F3;0.467512!10023-101D5;0.393795!10066-101I3;0.136526!10065-101I2;0.530345!10800-110I8;0.939778!10610-108F7;0.280164!10841-111E4;0.535944!10541-107H1;0.478509!10842-111E5;0.597313!10562-108A4;0.139243!10024-101D6;0.876674!10064-101I1;0.706509!10609-108F6;0.66254!10048-101G3;0.147705!10781-110G7;0.630968!10181-103D1;0.930556!10159-103A6;0.462577!10056-101H2;0.609531!10737-110B8;0.791239!10025-101D7;0.554983!10044-101F8;0.956187!10424-106D1;0.959007!10463-106H4;0.392749!10616-108G4;0.972222!10486-107A9;0.533268!10062-101H8;0.611193!10202-103F4;0.397199!10158-103A5;0.545935!10441-106E9;0.678181!10031-101E4;0.914613!10063-101H9;0.437762!10063-101H9;0.935074!11763-123H8;0.563751!11765-123I1;0.179328!11768-123I4;0.10583!10807-111A6;0.249919!10790-110H7;0.0719464!10798-110I6;0.343529!10786-110H3;0.862999!10591-108D6;0.387041!10593-108D8;0.782767!10590-108D5;0.248039!10026-101D8;0.450904!10096-102C6;0.562314!10168-103B6;0.743937!10154-103A1;0.179463!10209-103G2;0.37741!10061-101H7;0.852254!10027-101D9;0.872624!10043-101F7;0.830132!10783-110G9;0.845158!10028-101E1;0.274863!10060-101H6;0.164621!10203-103F5;0.833422!10059-101H5;0.788216!10047-101G2;0.989129!10029-101E2;0.453052!10058-101H4;0.807904!10418-106C4;0.743083!10492-107B6;0.334263!10694-109G1;0.100368!10797-110I5;0.855125!10057-101H3;0.428593!10100-102D1;0.981071!10055-101H1;0.836965!10204-103F6;0.716884!10191-103E2;0.415148!10563-108A5;0.738472
|name=5-GGTGRTTDTT,CNhs13795,BestGuess:HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq(0.710333748376522),T:1718.0(38.68%),B:12982.1(29.64%),P:1e-37
|name=5-GGTGRTTDTT,CNhs13795,BestGuess:HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq(0.710333748376522),T:1718.0(38.68%),B:12982.1(29.64%),P:1e-37
|tomtom_result=FOXI1#MA0042.1;1;0.000944929;0.449786;0.899572;10;GGTGATTATT;GGATGTTTGTTT;+!Pax4#MA0068.1;19;0.00194471;0.925683;0.9072;10;GGTGATTATT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!GSM1#MA0308.1;8;0.00285882;1.3608;0.9072;10;GGTGATTATT;TATACTCCGGAGTTTTTTAAT;-!EDS1#MA0294.1;-4;0.00481169;2.29036;1;6;GGTGATTATT;ATTTTTCCG;-!TBP#MA0108.2;1;0.00965516;4.59586;1;10;GGTGATTATT;CCCCGCCTTTTATAC;-!dl_1#MA0022.1;-1;0.0100501;4.78383;1;9;GGTGATTATT;GGGGTTTTTCCC;+!RGT1#MA0367.1;-3;0.0102472;4.87768;1;7;GGTGATTATT;AATTTTTCCGG;+!TBP#MA0108.2;1;0.0102515;4.87972;1;10;GGTGATTATT;CCCCGCCTTTTATAC;-!Gfi#MA0038.1;1;0.0107712;5.12708;1;9;GGTGATTATT;CAGTGATTTG;-!SUM1#MA0398.1;-1;0.011771;5.60301;1;9;GGTGATTATT;AAAATTTTT;+!HNF1A#MA0046.1;0;0.0166399;7.9206;1;10;GGTGATTATT;GGTAATTATTAACC;-!Foxd3#MA0041.1;0;0.0167406;7.96852;1;10;GGTGATTATT;GAATGTTTGTTT;+!CG4328#MA0182.1;-4;0.0201642;9.59814;1;6;GGTGATTATT;TTTATTA;+
}}
}}

Latest revision as of 14:52, 7 September 2012

Full Name: 5-GGTGRTTDTT,CNhs13795,BestGuess:HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq(0.710333748376522),T:1718.0(38.68%),B:12982.1(29.64%),P:1e-37

Motif matrix
POACGT
11.718616.762951.772147.748
2350.472243.9561015.338108.234
3414.0381.718429.5872.744
41.7181.7181168.24546.324
5670.02175.236486.194388.268
6331.5741.7185.1541379.554
71.7181.71827.4881687.076
8625.3521.718534.298556.632
9276.598104.798352.19984.414
101.7181.7181.7181712.846

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FOXI1#MA0042.110.0009449290.4497860.89957210GGTGATTATTGGATGTTTGTTT+
Pax4#MA0068.1190.001944710.9256830.907210GGTGATTATTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
GSM1#MA0308.180.002858821.36080.907210GGTGATTATTTATACTCCGGAGTTTTTTAAT-
EDS1#MA0294.1-40.004811692.2903616GGTGATTATTATTTTTCCG-
TBP#MA0108.210.009655164.59586110GGTGATTATTCCCCGCCTTTTATAC-
dl_1#MA0022.1-10.01005014.7838319GGTGATTATTGGGGTTTTTCCC+
RGT1#MA0367.1-30.01024724.8776817GGTGATTATTAATTTTTCCGG+
TBP#MA0108.210.01025154.87972110GGTGATTATTCCCCGCCTTTTATAC-
Gfi#MA0038.110.01077125.1270819GGTGATTATTCAGTGATTTG-
SUM1#MA0398.1-10.0117715.6030119GGTGATTATTAAAATTTTT+
HNF1A#MA0046.100.01663997.9206110GGTGATTATTGGTAATTATTAACC-
Foxd3#MA0041.100.01674067.96852110GGTGATTATTGAATGTTTGTTT+
CG4328#MA0182.1-40.02016429.5981416GGTGATTATTTTTATTA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:5-GGTGRTTDTT&oldid=2134517"