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MacroAPE 1083:CCAGTACA,motif794: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.601;2291.481;304.317;2.601!2;291.312;2177.037;31.212;101.439!3;1940.346;150.858;59.823;449.973!4;158.661;36.414;2403.324;2.601!5;2.601;2.6...")
 
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-111C9;0.516849!10788-110H5;0.614784!10792-110H9;0.423747!10765-110E9;0.334498!10829-111D1;0.6051!10830-111D2;0.926286!10831-111D3;0.896276!10832-111D4;0.525108!10833-111D5;0.702445!10764-110E8;0.987241!10770-110F5;0.453872!10399-106A3;0.203472!10400-106A4;0.498831!10405-106A9;0.62468!10834-111D6;0.693413!10835-111D7;0.941158!10836-111D8;0.566478!10837-111D9;0.460329!10699-109G6;0.343972!10802-111A1;0.916147!10796-110I4;0.825816!10010-101C1;0.822484!10810-111A9;0.899536!10421-106C7;0.524781!10708-109H6;0.811667!12235-129G3;0.792124!12236-129G4;0.547038!12237-129G5;0.645548!10167-103B5;0.549891!10151-102I7;0.212903!10428-106D5;0.324976!10795-110I3;0.502964!10805-111A4;0.972786!10052-101G7;0.69467!10189-103D9;0.91814!10589-108D4;0.94884!10425-106D2;0.614596!10427-106D4;0.398056!10702-109G9;0.795411!10432-106D9;0.305916!10496-107C1;0.403548!10718-109I7;0.43759!10011-101C2;0.307628!10053-101G8;0.900525!10686-109F2;0.123334!10084-102B3;0.408014!10012-101C3;0.489357!10085-102B4;0.335362!10482-107A5;0.402692!10419-106C5;0.942001!10080-102A8;0.921518!10760-110E4;0.788167!10709-109H7;0.711156!10710-109H8;0.436064!10703-109H1;0.133562!10719-109I8;0.496415!10642-109A3;0.803673!10177-103C6;0.111951!10164-103B2;0.368346!10173-103C2;0.38637!10166-103B4;0.213032!10083-102B2;0.205214!10188-103D8;0.292052!10552-107I3;0.409777!10553-107I4;0.297207!10013-101C4;0.467854!10536-107G5;0.930499!10618-108G6;0.393051!10423-106C9;0.365599!10785-110H2;0.661995!12238-129G6;0.882279!12239-129G7;0.198842!12240-129G8;0.648685!10416-106C2;0.515103!10801-110I9;0.538883!10766-110F1;0.251759!10824-111C5;0.846701!10825-111C6;0.542021!10826-111C7;0.532168!10454-106G4;0.502624!10409-106B4;0.680259!10638-108I8;0.772562!10636-108I6;0.882243!10513-107D9;0.643638!10420-106C6;0.453077!10082-102B1;0.732015!10014-101C5;0.484236!10070-101I7;0.997123!10452-106G2;0.766104!10453-106G3;0.31071!10449-106F8;0.564044!10042-101F6;0.52623!10069-101I6;0.397669!10193-103E4;0.622734!10631-108I1;0.453526!10438-106E6;0.757211!10488-107B2;0.651944!10196-103E7;0.86457!10071-101I8;0.842584!10071-101I8;0.790199!10041-101F5;0.42484!10451-106G1;0.687809!10450-106F9;0.387322!10604-108F1;0.460158!10605-108F2;0.327401!10606-108F3;0.424041!10603-108E9;0.223242!10497-107C2;0.120136!10448-106F7;0.571251!10643-109A4;0.0539588!10426-106D3;0.657789!10431-106D8;0.824439!10197-103E8;0.448186!10443-106F2;0.553694!10815-111B5;0.750069!10816-111B6;0.477261!10817-111B7;0.340787!10015-101C6;0.412716!10410-106B5;0.943729!10054-101G9;0.509107!10758-110E2;0.917583!10711-109H9;0.569424!10040-101F4;0.0968876!10470-106I2;0.333778!10415-106C1;0.929176!10198-103E9;0.168022!10614-108G2;0.665584!10612-108F9;0.898345!10549-107H9;0.610362!10615-108G3;0.263047!10487-107B1;0.848821!10433-106E1;0.97128!10688-109F4;0.0811934!10444-106F3;0.586588!10444-106F3;0.0279168!10485-107A8;0.0196225!10413-106B8;0.289771!10175-103C4;0.231301!10161-103A8;0.281849!12131-128D7;0.1915!10624-108H3;0.786213!10712-109I1;0.477118!10205-103F7;0.427441!10206-103F8;0.996043!10207-103F9;0.952245!10050-101G5;0.412304!10051-101G6;0.56786!10016-101C7;0.350545!10046-101G1;0.927614!10778-110G4;0.717585!10633-108I3;0.805269!10818-111B8;0.531276!10819-111B9;0.431116!10820-111C1;0.420408!10484-107A7;0.511464!10808-111A7;0.625026!10169-103B7;0.579587!10153-102I9;0.295094!13425-144D5;0.374115!13433-144E4;0.371001!13437-144E8;0.443028!11904-125F5;0.479027!11905-125F6;0.50757!10039-101F3;0.866078!10791-110H8;0.367243!10017-101C8;0.332037!10045-101F9;0.758419!10509-107D5;0.908091!10839-111E2;0.125227!10692-109F8;0.531872!10079-102A7;0.227234!10078-102A6;0.501443!10721-110A1;0.429168!10569-108B2;0.894291!10570-108B3;0.0316094!10571-108B4;0.046593!10647-109A8;0.0885618!10752-110D5;0.0483764!10782-110G8;0.724185!10726-110A6;0.128475!10018-101C9;0.495667!10086-102B5;0.00191969!10182-103D2;0.00894231!10165-103B3;0.339167!10499-107C4;0.366566!10408-106B3;0.357963!10019-101D1;0.0927674!10068-101I5;0.896164!10075-102A3;0.791892!10077-102A5;0.407463!10727-110A7;0.685398!10775-110G1;0.805832!10412-106B7;0.602958!12231-129F8;0.629153!12232-129F9;0.789468!12233-129G1;0.982635!12234-129G2;0.905654!10414-106B9;0.945672!10170-103B8;0.381393!10183-103D3;0.326787!10150-102I6;0.388579!10174-103C3;0.38772!10155-103A2;0.547843!10038-101F2;0.454796!10838-111E1;0.47177!10759-110E3;0.26733!10514-107E1;0.341377!10465-106H6;0.485376!10691-109F7;0.412605!10843-111E6;0.849627!10844-111E7;0.856039!11747-123G1;0.406236!11748-123G2;0.497192!11749-123G3;0.291939!11750-123G4;0.362344!11751-123G5;0.0777381!11840-124H4;0.0474202!11752-123G6;0.0813662!11753-123G7;0.329921!11754-123G8;0.45755!11755-123G9;0.866646!11756-123H1;0.571099!11833-124G6;0.609029!11760-123H5;0.860405!11836-124G9;0.979427!11758-123H3;0.546327!11835-124G8;0.496416!11762-123H7;0.566988!11838-124H2;0.367891!11757-123H2;0.398787!11759-123H4;0.886195!11761-123H6;0.767523!11842-124H6;0.913387!11837-124H1;0.301582!10568-108B1;0.820916!13230-141I8;0.375215!13231-141I9;0.781672!10696-109G3;0.728136!10493-107B7;0.0149846!10494-107B8;0.440097!10850-111F4;0.184326!10851-111F5;0.180845!10852-111F6;0.480904!10853-111F7;0.562234!10854-111F8;0.78903!10855-111F9;0.750174!10856-111G1;0.781323!10847-111F1;0.439739!10846-111E9;0.577624!10848-111F2;0.653381!10845-111E8;0.411268!10857-111G2;0.367559!10858-111G3;0.464182!10156-103A3;0.748287!11901-125F2;0.378739!11902-125F3;0.506634!11903-125F4;0.687328!10689-109F5;0.741788!10648-109A9;0.876768!10784-110H1;0.70303!10744-110C6;0.687248!10772-110F7;0.798673!10474-106I6;0.987172!10600-108E6;0.612556!10684-109E9;0.357948!12226-129F3;0.546844!12227-129F4;0.415934!10508-107D4;0.960504!10539-107G8;0.347905!10607-108F4;0.339214!10555-107I6;0.982717!10774-110F9;0.418071!10637-108I7;0.859948!10663-109C6;0.303116!10728-110A8;0.961489!10729-110A9;0.389034!10430-106D7;0.717543!10730-110B1;0.654367!10813-111B3;0.418626!10812-111B2;0.890791!10037-101F1;0.253339!10172-103C1;0.361566!10163-103B1;0.296076!10076-102A4;0.324204!10073-102A1;0.43777!10036-101E9;0.379458!10195-103E6;0.382687!10277-104E7;0.403586!10434-106E2;0.431192!10550-107I1;0.205848!10545-107H5;0.942566!10544-107H4;0.538139!10704-109H2;0.957637!10510-107D6;0.312411!10558-107I9;0.0156423!10020-101D2;0.621577!10732-110B3;0.675047!10049-101G4;0.939166!10698-109G5;0.121738!10437-106E5;0.945369!10417-106C3;0.770325!10035-101E8;0.631886!10171-103B9;0.337147!10157-103A4;0.309135!10034-101E7;0.374599!10072-101I9;0.341882!10199-103F1;0.413213!10200-103F2;0.0756369!10697-109G4;0.671441!10723-110A3;0.77473!10179-103C8;0.647495!10160-103A7;0.381113!10180-103C9;0.16413!10162-103A9;0.305141!10021-101D3;0.276915!10840-111E3;0.638024!10706-109H4;0.911558!10033-101E6;0.27207!10032-101E5;0.370156!10490-107B4;0.406157!10439-106E7;0.78!10022-101D4;0.513927!10176-103C5;0.889633!10469-106I1;0.264011!10067-101I4;0.614627!10411-106B6;0.429557!10471-106I3;0.605234!10030-101E3;0.877432!10475-106I7;0.79925!10787-110H4;0.593889!10477-106I9;0.777698!10695-109G2;0.274648!11771-123I7;0.306184!11772-123I8;0.0333286!11773-123I9;0.0806506!10093-102C3;0.593748!10442-106F1;0.0588653!10442-106F1;0.490826!10201-103F3;0.420563!10639-108I9;0.343047!11843-124H7;0.986619!11841-124H5;0.566213!10693-109F9;0.888236!10436-106E4;0.886037!10483-107A6;0.804265!10282-104F3;0.765819!10023-101D5;0.277426!10066-101I3;0.911058!10065-101I2;0.825911!10800-110I8;0.608375!10610-108F7;0.0602726!10841-111E4;0.947848!10541-107H1;0.768504!10842-111E5;0.266568!10562-108A4;0.297204!10024-101D6;0.11362!10064-101I1;0.980609!10609-108F6;0.984569!10048-101G3;0.548064!10781-110G7;0.944684!10181-103D1;0.354742!10159-103A6;0.411627!10056-101H2;0.111328!10737-110B8;0.822797!10025-101D7;0.863984!10044-101F8;0.851116!10424-106D1;0.789091!10463-106H4;0.864426!10616-108G4;0.436549!10486-107A9;0.876722!10062-101H8;0.566295!10202-103F4;0.819006!10158-103A5;0.164156!10441-106E9;0.200453!10031-101E4;0.240742!10063-101H9;0.430519!10063-101H9;0.399928!11763-123H8;0.73092!11765-123I1;0.150807!11768-123I4;0.167152!10807-111A6;0.205846!10790-110H7;0.339889!10798-110I6;0.449104!10786-110H3;0.577523!10591-108D6;0.357641!10593-108D8;0.370799!10590-108D5;0.432107!10026-101D8;0.933048!10096-102C6;0.319745!10168-103B6;0.218551!10154-103A1;0.455906!10209-103G2;0.275024!10061-101H7;0.506314!10027-101D9;0.616546!10043-101F7;0.73914!10783-110G9;0.945445!10028-101E1;0.518476!10060-101H6;0.784692!10203-103F5;0.601279!10059-101H5;0.372338!10047-101G2;0.424126!10029-101E2;0.510757!10058-101H4;0.922357!10418-106C4;0.732003!10492-107B6;0.30343!10694-109G1;0.197267!10797-110I5;0.204293!10057-101H3;0.548927!10100-102D1;0.604379!10055-101H1;0.990894!10204-103F6;0.637012!10191-103E2;0.343601!10563-108A5;0.532156
|name=CCAGTACA,motif794,CNhs11974,T:2601.0(47.87%),B:30203.6(40.41%),P:1e-28
|name=CCAGTACA,motif794,CNhs11974,T:2601.0(47.87%),B:30203.6(40.41%),P:1e-28
|tomtom_result=RAP1#MA0359.1;2;0.00511479;2.43464;1;8;CCAGTACA;CACCCATACA;+!Tcfcp2l1#MA0145.1;0;0.0114875;5.46803;1;8;CCAGTACA;CCAGTTCAAACCAG;+!NR3C1#MA0113.1;0;0.0176148;8.38466;1;8;CCAGTACA;TCAGGACATAATGTTCCC;-
}}
}}

Latest revision as of 15:03, 7 September 2012

Full Name: CCAGTACA,motif794,CNhs11974,T:2601.0(47.87%),B:30203.6(40.41%),P:1e-28

Motif matrix
POACGT
12.6012291.481304.3172.601
2291.3122177.03731.212101.439
31940.346150.85859.823449.973
4158.66136.4142403.3242.601
52.6012.601132.6512463.147
62465.7482.601130.052.601
7104.042424.13270.2272.601
82119.815340.73159.82380.631

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RAP1#MA0359.120.005114792.4346418CCAGTACACACCCATACA+
Tcfcp2l1#MA0145.100.01148755.4680318CCAGTACACCAGTTCAAACCAG+
NR3C1#MA0113.100.01761488.3846618CCAGTACATCAGGACATAATGTTCCC-
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