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MacroAPE 1083:CNhs12494 bu f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;116.52215277777482;40.15668832406321;366.94636838343126;308.3747905147294!2;36.36737615800974;71.08811062655623;488.5418554141906;236.002657...")
 
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10429-106D6;0.207766!10464-106H5;0.0557545!10827-111C8;0.0645624!10789-110H6;0.386949!10828-111C9;0.221839!10788-110H5;0.137745!10792-110H9;0.0378568!10765-110E9;0.0314102!10829-111D1;0.0855058!10830-111D2;0.266937!10831-111D3;0.136841!10832-111D4;0.2181!10833-111D5;0.14579!10764-110E8;0.189487!10770-110F5;0.403274!10399-106A3;0.232037!10400-106A4;0.110321!10405-106A9;0.107824!10834-111D6;0.0974959!10835-111D7;0.194679!10836-111D8;0.0375693!10837-111D9;0.0606524!10699-109G6;0.0673293!10802-111A1;0.022725!10796-110I4;0.0521774!10010-101C1;0.260078!10810-111A9;0.478987!10421-106C7;0.512268!10708-109H6;0.143067!12235-129G3;0.379762!12236-129G4;0.185414!12237-129G5;0.220718!10167-103B5;0.266774!10151-102I7;0.966108!10428-106D5;0.744279!10795-110I3;0.264466!10805-111A4;0.0491477!10052-101G7;0.894187!10189-103D9;0.154375!10589-108D4;0.484521!10425-106D2;0.840377!10427-106D4;0.227606!10702-109G9;0.39748!10432-106D9;0.35075!10496-107C1;0.211478!10718-109I7;0.137778!10011-101C2;0.124984!10053-101G8;0.483651!10686-109F2;0.653496!10084-102B3;0.0804209!10012-101C3;0.619618!10085-102B4;0.835097!10482-107A5;0.756784!10419-106C5;0.111381!10080-102A8;0.224271!10760-110E4;0.490752!10709-109H7;0.120543!10710-109H8;0.0334884!10703-109H1;0.0596188!10719-109I8;0.697912!10642-109A3;0.510959!10177-103C6;0.978464!10164-103B2;0.525725!10173-103C2;0.418629!10166-103B4;0.725772!10083-102B2;0.847718!10188-103D8;0.858995!10552-107I3;0.545201!10553-107I4;0.595382!10013-101C4;0.157637!10536-107G5;0.289663!10618-108G6;0.612121!10423-106C9;0.0616281!10785-110H2;0.0300159!12238-129G6;0.0541124!12239-129G7;0.463022!12240-129G8;0.459756!10416-106C2;0.399811!10801-110I9;0.273638!10766-110F1;0.0384956!10824-111C5;0.0795769!10825-111C6;0.681825!10826-111C7;0.791303!10454-106G4;0.621584!10409-106B4;0.389662!10638-108I8;0.0591181!10636-108I6;0.184948!10513-107D9;0.0451329!10420-106C6;0.0390986!10082-102B1;0.821244!10014-101C5;0.226814!10070-101I7;0.496227!10452-106G2;0.22988!10453-106G3;0.177426!10449-106F8;0.0405546!10042-101F6;0.0878676!10069-101I6;0.337494!10193-103E4;0.189796!10631-108I1;0.627581!10438-106E6;0.433941!10488-107B2;0.0855846!10196-103E7;0.758725!10071-101I8;0.23515!10071-101I8;0.0460985!10041-101F5;0.621419!10451-106G1;0.484391!10450-106F9;0.935841!10604-108F1;0.924254!10605-108F2;0.193998!10606-108F3;0.119027!10603-108E9;0.0578844!10497-107C2;0.353035!10448-106F7;0.294459!10643-109A4;0.343561!10426-106D3;0.235985!10431-106D8;0.0767385!10197-103E8;0.261143!10443-106F2;0.0696339!10815-111B5;0.674899!10816-111B6;0.213989!10817-111B7;0.14862!10015-101C6;0.173445!10410-106B5;0.858974!10054-101G9;0.875542!10758-110E2;0.232279!10711-109H9;0.960079!10040-101F4;0.235123!10470-106I2;0.921847!10415-106C1;0.0303029!10198-103E9;0.576945!10614-108G2;0.084968!10612-108F9;0.230716!10549-107H9;0.200034!10615-108G3;0.386801!10487-107B1;0.151549!10433-106E1;0.617356!10688-109F4;0.137314!10444-106F3;0.0524745!10444-106F3;0.464086!10485-107A8;0.641521!10413-106B8;0.625535!10175-103C4;0.415479!10161-103A8;0.768473!12131-128D7;0.480097!10624-108H3;0.0436133!10712-109I1;0.73032!10205-103F7;0.370893!10206-103F8;0.217956!10207-103F9;0.212022!10050-101G5;0.628012!10051-101G6;0.780473!10016-101C7;0.0976305!10046-101G1;0.479798!10778-110G4;0.204362!10633-108I3;0.570067!10818-111B8;0.109765!10819-111B9;0.169105!10820-111C1;0.197648!10484-107A7;0.171247!10808-111A7;0.0637931!10169-103B7;0.095194!10153-102I9;0.784799!13425-144D5;0.522689!13433-144E4;0.878495!13437-144E8;0.917568!11904-125F5;0.857211!11905-125F6;0.435657!10039-101F3;0.240694!10791-110H8;0.913849!10017-101C8;0.187746!10045-101F9;0.190184!10509-107D5;0.0701517!10839-111E2;0.145673!10692-109F8;0.173339!10079-102A7;0.151912!10078-102A6;0.268374!10721-110A1;0.189238!10569-108B2;0.756643!10570-108B3;0.0579085!10571-108B4;0.0463966!10647-109A8;0.0137429!10752-110D5;0.136315!10782-110G8;0.0178239!10726-110A6;0.715512!10018-101C9;0.384087!10086-102B5;0.68809!10182-103D2;0.344708!10165-103B3;0.895972!10499-107C4;0.832973!10408-106B3;0.622009!10019-101D1;0.0153704!10068-101I5;0.195896!10075-102A3;0.165757!10077-102A5;0.164259!10727-110A7;0.804605!10775-110G1;0.890537!10412-106B7;0.254285!12231-129F8;0.00250218!12232-129F9;0.635161!12233-129G1;0.209326!12234-129G2;0.512189!10414-106B9;0.845836!10170-103B8;0.0134403!10183-103D3;0.864141!10150-102I6;0.999278!10174-103C3;0.757299!10155-103A2;0.165896!10038-101F2;0.277563!10838-111E1;0.41537!10759-110E3;0.915704!10514-107E1;0.238395!10465-106H6;0.0121226!10691-109F7;0.157746!10843-111E6;0.00713147!10844-111E7;0.297072!11747-123G1;0.409029!11748-123G2;0.049875!11749-123G3;0.0905873!11750-123G4;0.018112!11751-123G5;0.191157!11840-124H4;0.669723!11752-123G6;0.640233!11753-123G7;0.191704!11754-123G8;0.213752!11755-123G9;0.0395185!11756-123H1;0.173596!11833-124G6;0.184901!11760-123H5;0.615772!11836-124G9;0.159834!11758-123H3;0.175999!11835-124G8;0.233023!11762-123H7;0.11373!11838-124H2;0.145706!11757-123H2;0.141253!11759-123H4;0.160336!11761-123H6;0.134409!11842-124H6;0.035115!11837-124H1;0.345532!10568-108B1;0.0708985!13230-141I8;0.00292723!13231-141I9;0.233054!10696-109G3;0.385071!10493-107B7;0.70192!10494-107B8;0.114951!10850-111F4;0.462117!10851-111F5;0.102621!10852-111F6;0.391919!10853-111F7;0.473075!10854-111F8;0.543852!10855-111F9;0.969604!10856-111G1;0.0571887!10847-111F1;0.228394!10846-111E9;0.970349!10848-111F2;0.480408!10845-111E8;0.28451!10857-111G2;0.440617!10858-111G3;0.483058!10156-103A3;0.772135!11901-125F2;0.784748!11902-125F3;0.56782!11903-125F4;0.488468!10689-109F5;0.454572!10648-109A9;0.726185!10784-110H1;0.551443!10744-110C6;0.0290979!10772-110F7;0.183894!10474-106I6;0.0546141!10600-108E6;0.424573!10684-109E9;0.0739574!12226-129F3;0.366348!12227-129F4;0.786853!10508-107D4;0.581264!10539-107G8;0.889226!10607-108F4;0.442367!10555-107I6;0.0727592!10774-110F9;0.971562!10637-108I7;0.39967!10663-109C6;0.278313!10728-110A8;0.145084!10729-110A9;0.0873243!10430-106D7;0.348207!10730-110B1;0.0396586!10813-111B3;0.787476!10812-111B2;0.0113846!10037-101F1;0.230976!10172-103C1;0.649377!10163-103B1;0.73969!10076-102A4;0.906434!10073-102A1;0.880747!10036-101E9;0.7821!10195-103E6;0.864312!10277-104E7;0.875626!10434-106E2;0.804382!10550-107I1;0.011323!10545-107H5;0.0325407!10544-107H4;0.103915!10704-109H2;0.284205!10510-107D6;0.705126!10558-107I9;0.347047!10020-101D2;0.195997!10732-110B3;0.0676295!10049-101G4;0.470774!10698-109G5;0.161863!10437-106E5;0.0257668!10417-106C3;0.891963!10035-101E8;0.606766!10171-103B9;0.955868!10157-103A4;0.929695!10034-101E7;0.796833!10072-101I9;0.862291!10199-103F1;0.647555!10200-103F2;0.99302!10697-109G4;0.767315!10723-110A3;0.253655!10179-103C8;0.235652!10160-103A7;0.449809!10180-103C9;0.565456!10162-103A9;0.69062!10021-101D3;0.858997!10840-111E3;0.811049!10706-109H4;0.324209!10033-101E6;0.244841!10032-101E5;0.876948!10490-107B4;0.840506!10439-106E7;0.251027!10022-101D4;0.81824!10176-103C5;0.592501!10469-106I1;0.571663!10067-101I4;0.127049!10411-106B6;0.104854!10471-106I3;0.421843!10030-101E3;0.462108!10475-106I7;0.0741827!10787-110H4;0.682419!10477-106I9;0.572874!10695-109G2;0.813626!11771-123I7;0.0389023!11772-123I8;0.887363!11773-123I9;0.731787!10093-102C3;0.31643!10442-106F1;0.409353!10442-106F1;0.796537!10201-103F3;0.763112!10639-108I9;0.11415!11843-124H7;0.182791!11841-124H5;0.404301!10693-109F9;0.445317!10436-106E4;0.158687!10483-107A6;0.0393821!10282-104F3;0.0484006!10023-101D5;0.745978!10066-101I3;0.901954!10065-101I2;0.211645!10800-110I8;0.526489!10610-108F7;0.147087!10841-111E4;0.870857!10541-107H1;0.814201!10842-111E5;0.0769137!10562-108A4;0.827318!10024-101D6;0.819329!10064-101I1;0.484975!10609-108F6;0.118112!10048-101G3;0.441512!10781-110G7;0.998934!10181-103D1;0.454812!10159-103A6;0.488227!10056-101H2;0.754881!10737-110B8;0.285019!10025-101D7;0.141897!10044-101F8;0.897634!10424-106D1;0.464231!10463-106H4;0.47731!10616-108G4;0.00222146!10486-107A9;0.167017!10062-101H8;0.257108!10202-103F4;0.493312!10158-103A5;0.854672!10441-106E9;0.515682!10031-101E4;0.916341!10063-101H9;0.675649!10063-101H9;0.641079!11763-123H8;0.0311442!11765-123I1;0.199382!11768-123I4;0.225016!10807-111A6;0.216168!10790-110H7;0.747943!10798-110I6;0.976602!10786-110H3;0.688914!10591-108D6;0.557524!10593-108D8;0.765842!10590-108D5;0.865138!10026-101D8;0.867033!10096-102C6;3.4631e-05!10168-103B6;0.000585275!10154-103A1;0.864831!10209-103G2;0.622743!10061-101H7;0.944536!10027-101D9;0.442312!10043-101F7;0.289289!10783-110G9;0.527529!10028-101E1;0.0636372!10060-101H6;0.282509!10203-103F5;0.0745015!10059-101H5;0.795089!10047-101G2;0.577715!10029-101E2;0.621657!10058-101H4;0.790665!10418-106C4;0.399027!10492-107B6;0.106438!10694-109G1;0.587882!10797-110I5;0.256429!10057-101H3;0.0144517!10100-102D1;0.861084!10055-101H1;0.0870397!10204-103F6;0.187011!10191-103E2;0.814116!10563-108A5;0.404755
|name=CNhs12494_bu_f1
|name=CNhs12494_bu_f1
|tomtom_result=Pax4#MA0068.1;0;0.00445135;2.11884;1;12;GGGGTGAGATCT;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!GAT3#MA0301.1;-3;0.00461043;2.19456;1;9;GGGGTGAGATCT;TGTAGATCT;-!ECM23#MA0293.1;-3;0.0047833;2.27685;1;9;GGGGTGAGATCT;TTTAGATCTTT;-!SRD1#MA0389.1;-4;0.00725926;3.45541;1;8;GGGGTGAGATCT;GTAGATCT;-!GAT4#MA0302.1;-3;0.00987198;4.69906;1;9;GGGGTGAGATCT;TTTAGATCTTT;-!CREB1#MA0018.1;1;0.0107911;5.13658;1;11;GGGGTGAGATCT;CCTGGTGACGTC;+!Tal1::Gata1#MA0140.1;5;0.0113382;5.39698;1;12;GGGGTGAGATCT;CTGGTGGGGACAGATAAG;+!RUNX1#MA0002.2;-1;0.0193752;9.2226;1;11;GGGGTGAGATCT;GTCTGTGGTTT;+
}}
}}

Latest revision as of 12:10, 7 September 2012

Full Name: CNhs12494_bu_f1

Motif matrix
POACGT
1116.5221527777748240.15668832406321366.94636838343126308.3747905147294
236.3673761580097471.08811062655623488.5418554141906236.00265780124212
342.5544983295878829.539549207275943408.69030097157736351.2156514915572
4127.4879349647337125.969407964573264448.0715246712443230.47113239944724
520.0381858345631376.166856285704672172.61946642200897633.1754914577214
625.10715569243214453.49301098863215750.82085403482112.578979284112927
7775.50402646619365.06171430389895729.8407003687000521.593558861205384
88.60959447487758712.253101801532507805.62136008007525.515943643512845
9568.531239727732347.56301776101361147.6944104295048468.2113320817476
10130.1672439166084479.8922930440264282.8343705230841539.1060925162798
1151.128682293142035336.90433019854805165.6238385416661278.3431489666428
12319.031230549881577.5827605203056491.73009505013505343.65591387967623

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax4#MA0068.100.004451352.11884112GGGGTGAGATCTGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
GAT3#MA0301.1-30.004610432.1945619GGGGTGAGATCTTGTAGATCT-
ECM23#MA0293.1-30.00478332.2768519GGGGTGAGATCTTTTAGATCTTT-
SRD1#MA0389.1-40.007259263.4554118GGGGTGAGATCTGTAGATCT-
GAT4#MA0302.1-30.009871984.6990619GGGGTGAGATCTTTTAGATCTTT-
CREB1#MA0018.110.01079115.13658111GGGGTGAGATCTCCTGGTGACGTC+
Tal1::Gata1#MA0140.150.01133825.39698112GGGGTGAGATCTCTGGTGGGGACAGATAAG+
RUNX1#MA0002.2-10.01937529.2226111GGGGTGAGATCTGTCTGTGGTTT+
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