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MacroAPE 1083:9-AAACTGCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;851.29;431.112;35.926;243.672!2;1119.954;87.472;103.092;251.482!3;1413.61;1.562;145.266;1.562!4;273.35;766.942;153.076;367.07!5;378.004;1.56...")
 
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429-106D6;0.945268!10464-106H5;0.706853!10827-111C8;0.862425!10789-110H6;0.891153!10828-111C9;0.882519!10788-110H5;0.953684!10792-110H9;0.936343!10765-110E9;0.824527!10829-111D1;0.593304!10830-111D2;0.896137!10831-111D3;0.978909!10832-111D4;0.886768!10833-111D5;0.971077!10764-110E8;0.702587!10770-110F5;0.707314!10399-106A3;0.514599!10400-106A4;0.726084!10405-106A9;0.565758!10834-111D6;0.633707!10835-111D7;0.882624!10836-111D8;0.179431!10837-111D9;0.630563!10699-109G6;0.585201!10802-111A1;0.95834!10796-110I4;0.961333!10010-101C1;0.187999!10810-111A9;0.221979!10421-106C7;0.271912!10708-109H6;0.495478!12235-129G3;0.0723344!12236-129G4;0.968349!12237-129G5;0.0782247!10167-103B5;0.501527!10151-102I7;0.0208935!10428-106D5;0.0169389!10795-110I3;0.552667!10805-111A4;0.404311!10052-101G7;0.0196236!10189-103D9;0.577868!10589-108D4;0.0287283!10425-106D2;0.586573!10427-106D4;0.251288!10702-109G9;0.516875!10432-106D9;0.873011!10496-107C1;0.0990392!10718-109I7;0.497705!10011-101C2;0.566973!10053-101G8;0.126264!10686-109F2;0.911732!10084-102B3;0.0624868!10012-101C3;0.0406896!10085-102B4;0.0136441!10482-107A5;0.0836105!10419-106C5;0.209742!10080-102A8;0.276016!10760-110E4;0.850971!10709-109H7;0.196446!10710-109H8;0.0265653!10703-109H1;0.171888!10719-109I8;0.664992!10642-109A3;0.869797!10177-103C6;0.44342!10164-103B2;0.0171726!10173-103C2;0.0103136!10166-103B4;0.086885!10083-102B2;0.0714199!10188-103D8;0.0865082!10552-107I3;0.0336022!10553-107I4;0.265977!10013-101C4;0.0213796!10536-107G5;0.401635!10618-108G6;0.60604!10423-106C9;0.293639!10785-110H2;0.188623!12238-129G6;0.0908911!12239-129G7;0.0578948!12240-129G8;0.890661!10416-106C2;0.00767301!10801-110I9;0.632431!10766-110F1;0.984718!10824-111C5;0.484498!10825-111C6;0.50729!10826-111C7;0.315784!10454-106G4;0.328988!10409-106B4;0.446312!10638-108I8;0.862689!10636-108I6;0.13072!10513-107D9;0.0346851!10420-106C6;0.448894!10082-102B1;0.437071!10014-101C5;0.616315!10070-101I7;0.160442!10452-106G2;0.18373!10453-106G3;0.888978!10449-106F8;0.910611!10042-101F6;0.848065!10069-101I6;0.0896044!10193-103E4;0.969434!10631-108I1;0.0149559!10438-106E6;0.805347!10488-107B2;0.13367!10196-103E7;0.17659!10071-101I8;0.531073!10071-101I8;0.285431!10041-101F5;0.0302369!10451-106G1;0.0178436!10450-106F9;0.520116!10604-108F1;0.409536!10605-108F2;0.339015!10606-108F3;0.0860238!10603-108E9;0.260271!10497-107C2;0.208443!10448-106F7;0.238084!10643-109A4;0.83939!10426-106D3;0.189857!10431-106D8;0.0579608!10197-103E8;0.161306!10443-106F2;0.35617!10815-111B5;0.0128384!10816-111B6;0.0845313!10817-111B7;0.0432588!10015-101C6;0.0680579!10410-106B5;0.470118!10054-101G9;0.0201913!10758-110E2;0.24948!10711-109H9;0.067547!10040-101F4;0.101111!10470-106I2;0.0125262!10415-106C1;0.186798!10198-103E9;0.28494!10614-108G2;0.439419!10612-108F9;0.152393!10549-107H9;0.139932!10615-108G3;0.177556!10487-107B1;0.506014!10433-106E1;0.193891!10688-109F4;0.106527!10444-106F3;0.025959!10444-106F3;0.28667!10485-107A8;0.348651!10413-106B8;0.128098!10175-103C4;0.126533!10161-103A8;0.020947!12131-128D7;0.053681!10624-108H3;0.76447!10712-109I1;0.440271!10205-103F7;0.696433!10206-103F8;0.179381!10207-103F9;0.423999!10050-101G5;0.706035!10051-101G6;0.701977!10016-101C7;0.694082!10046-101G1;0.460473!10778-110G4;0.493943!10633-108I3;0.519776!10818-111B8;0.058867!10819-111B9;0.171149!10820-111C1;0.176623!10484-107A7;0.203574!10808-111A7;0.232343!10169-103B7;0.861651!10153-102I9;0.00573557!13425-144D5;0.0271229!13433-144E4;0.069178!13437-144E8;0.0504884!11904-125F5;0.0594644!11905-125F6;0.91354!10039-101F3;0.225435!10791-110H8;0.0145891!10017-101C8;0.156273!10045-101F9;0.229603!10509-107D5;0.603992!10839-111E2;0.277053!10692-109F8;0.0253542!10079-102A7;0.200874!10078-102A6;0.371834!10721-110A1;0.426842!10569-108B2;0.0727602!10570-108B3;0.83821!10571-108B4;0.854262!10647-109A8;0.688973!10752-110D5;0.282357!10782-110G8;0.665626!10726-110A6;0.614453!10018-101C9;0.00317862!10086-102B5;0.523899!10182-103D2;0.224403!10165-103B3;0.0235755!10499-107C4;0.0243633!10408-106B3;0.0113749!10019-101D1;0.995515!10068-101I5;0.699506!10075-102A3;0.558292!10077-102A5;0.720387!10727-110A7;0.0492041!10775-110G1;0.726318!10412-106B7;0.737711!12231-129F8;0.878859!12232-129F9;0.88256!12233-129G1;0.469119!12234-129G2;0.783807!10414-106B9;0.878561!10170-103B8;0.0645605!10183-103D3;0.00554281!10150-102I6;0.00761967!10174-103C3;0.0109828!10155-103A2;0.099931!10038-101F2;0.0775678!10838-111E1;0.0421149!10759-110E3;0.303056!10514-107E1;0.0213849!10465-106H6;0.0381114!10691-109F7;0.116986!10843-111E6;0.03066!10844-111E7;0.383259!11747-123G1;0.352795!11748-123G2;0.780515!11749-123G3;0.810358!11750-123G4;0.291755!11751-123G5;0.907118!11840-124H4;0.497638!11752-123G6;0.355308!11753-123G7;0.780783!11754-123G8;0.743266!11755-123G9;0.688504!11756-123H1;0.5342!11833-124G6;0.687148!11760-123H5;0.647834!11836-124G9;0.533202!11758-123H3;0.4273!11835-124G8;0.944116!11762-123H7;0.758243!11838-124H2;0.352082!11757-123H2;0.160684!11759-123H4;0.493302!11761-123H6;0.546405!11842-124H6;0.472355!11837-124H1;0.954043!10568-108B1;0.827059!13230-141I8;0.889139!13231-141I9;0.830244!10696-109G3;0.945859!10493-107B7;0.500055!10494-107B8;0.0387515!10850-111F4;0.0867865!10851-111F5;0.192514!10852-111F6;0.239814!10853-111F7;0.0390994!10854-111F8;0.249459!10855-111F9;0.375865!10856-111G1;0.729775!10847-111F1;0.233842!10846-111E9;0.346866!10848-111F2;0.0601813!10845-111E8;0.458643!10857-111G2;0.487289!10858-111G3;0.0957445!10156-103A3;0.0698297!11901-125F2;0.0199546!11902-125F3;0.731627!11903-125F4;0.896023!10689-109F5;0.712998!10648-109A9;0.150121!10784-110H1;0.477914!10744-110C6;0.031758!10772-110F7;0.330516!10474-106I6;0.915749!10600-108E6;0.0496046!10684-109E9;0.361512!12226-129F3;0.0997764!12227-129F4;0.0537626!10508-107D4;0.40175!10539-107G8;0.0821988!10607-108F4;0.040254!10555-107I6;0.868369!10774-110F9;0.102992!10637-108I7;0.326742!10663-109C6;0.96074!10728-110A8;0.946531!10729-110A9;0.141854!10430-106D7;0.331257!10730-110B1;0.970598!10813-111B3;0.3029!10812-111B2;0.629562!10037-101F1;0.214836!10172-103C1;0.0167967!10163-103B1;0.00625442!10076-102A4;0.0233748!10073-102A1;0.0185244!10036-101E9;0.0243347!10195-103E6;0.0215779!10277-104E7;0.0157432!10434-106E2;0.676375!10550-107I1;0.0196433!10545-107H5;0.105934!10544-107H4;0.162958!10704-109H2;0.103117!10510-107D6;0.299578!10558-107I9;0.0503433!10020-101D2;0.0127256!10732-110B3;0.47281!10049-101G4;0.454669!10698-109G5;0.986775!10437-106E5;0.0632287!10417-106C3;0.153752!10035-101E8;0.0828181!10171-103B9;0.0136431!10157-103A4;0.0138461!10034-101E7;0.0127341!10072-101I9;0.0203511!10199-103F1;0.0371384!10200-103F2;0.977577!10697-109G4;0.621406!10723-110A3;0.843496!10179-103C8;0.186206!10160-103A7;0.248244!10180-103C9;0.22646!10162-103A9;0.0686522!10021-101D3;0.0191811!10840-111E3;0.169888!10706-109H4;0.530534!10033-101E6;0.269631!10032-101E5;0.0208537!10490-107B4;0.0212998!10439-106E7;0.0700378!10022-101D4;0.0444347!10176-103C5;0.24456!10469-106I1;0.0123419!10067-101I4;0.122462!10411-106B6;0.0510297!10471-106I3;0.142027!10030-101E3;0.433574!10475-106I7;0.0831173!10787-110H4;0.365593!10477-106I9;0.184734!10695-109G2;0.724904!11771-123I7;0.51806!11772-123I8;0.454133!11773-123I9;0.873697!10093-102C3;0.89905!10442-106F1;0.970359!10442-106F1;0.0193784!10201-103F3;0.0993162!10639-108I9;0.405127!11843-124H7;0.447248!11841-124H5;0.247198!10693-109F9;0.668029!10436-106E4;0.0567128!10483-107A6;0.0375316!10282-104F3;0.030051!10023-101D5;0.887678!10066-101I3;0.900321!10065-101I2;0.68227!10800-110I8;0.843339!10610-108F7;0.27479!10841-111E4;0.400007!10541-107H1;0.967401!10842-111E5;0.513361!10562-108A4;0.969334!10024-101D6;0.804977!10064-101I1;0.245527!10609-108F6;0.11965!10048-101G3;0.481918!10781-110G7;0.220925!10181-103D1;0.626109!10159-103A6;0.0446426!10056-101H2;0.035141!10737-110B8;0.0902637!10025-101D7;0.127458!10044-101F8;0.0303384!10424-106D1;0.32672!10463-106H4;0.569984!10616-108G4;0.158423!10486-107A9;0.594772!10062-101H8;0.238364!10202-103F4;0.795458!10158-103A5;0.460564!10441-106E9;0.199243!10031-101E4;0.0205642!10063-101H9;0.0269649!10063-101H9;0.0447571!11763-123H8;0.0606507!11765-123I1;0.991011!11768-123I4;0.548094!10807-111A6;0.594151!10790-110H7;0.0437914!10798-110I6;0.350636!10786-110H3;0.153507!10591-108D6;0.0659988!10593-108D8;0.0333527!10590-108D5;0.199919!10026-101D8;0.0254318!10096-102C6;0.895602!10168-103B6;0.477279!10154-103A1;0.0250925!10209-103G2;0.0345123!10061-101H7;0.781667!10027-101D9;0.465651!10043-101F7;0.0532531!10783-110G9;0.120629!10028-101E1;0.161775!10060-101H6;0.249005!10203-103F5;0.826375!10059-101H5;0.915585!10047-101G2;0.868001!10029-101E2;0.61243!10058-101H4;0.998024!10418-106C4;0.91362!10492-107B6;0.161456!10694-109G1;0.230741!10797-110I5;0.172397!10057-101H3;0.161721!10100-102D1;0.763096!10055-101H1;0.494318!10204-103F6;0.782478!10191-103E2;0.239793!10563-108A5;0.121913
|name=9-AAACTGCA,CNhs12312,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.688895137160775),T:1562.0(35.53%),B:12147.5(27.57%),P:1e-30
|name=9-AAACTGCA,CNhs12312,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.688895137160775),T:1562.0(35.53%),B:12147.5(27.57%),P:1e-30
|tomtom_result=run::Bgb#MA0242.1;0;0.00428212;2.03829;1;8;AAACTGCA;TAACCGCAA;+!SOK2#MA0385.1;-1;0.00745172;3.54702;1;7;AAACTGCA;ACCTGCAGGCA;+!AFT1#MA0269.1;4;0.00852343;4.05715;1;8;AAACTGCA;TTACATATTGCACCCGATTGG;+!PHD1#MA0355.1;-1;0.0146522;6.97445;1;7;AAACTGCA;ACCTGCAGCA;+!slbo#MA0244.1;-2;0.0171296;8.15369;1;6;AAACTGCA;ATTGCAAA;+
}}
}}

Latest revision as of 12:11, 7 September 2012

Full Name: 9-AAACTGCA,CNhs12312,BestGuess:BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer(0.688895137160775),T:1562.0(35.53%),B:12147.5(27.57%),P:1e-30

Motif matrix
POACGT
1851.29431.11235.926243.672
21119.95487.472103.092251.482
31413.611.562145.2661.562
4273.35766.942153.076367.07
5378.0041.562106.2161076.218
6115.5881.5621443.2881.562
7209.3081349.5681.5621.562
81344.882120.2741.56295.282

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
run::Bgb#MA0242.100.004282122.0382918AAACTGCATAACCGCAA+
SOK2#MA0385.1-10.007451723.5470217AAACTGCAACCTGCAGGCA+
AFT1#MA0269.140.008523434.0571518AAACTGCATTACATATTGCACCCGATTGG+
PHD1#MA0355.1-10.01465226.9744517AAACTGCAACCTGCAGCA+
slbo#MA0244.1-20.01712968.1536916AAACTGCAATTGCAAA+
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