Coexpression cluster:C3093: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C3093_mesenchymal_gastric_oral_glioma_liver_osteosarcoma_maxillary | |full_id=C3093_mesenchymal_gastric_oral_glioma_liver_osteosarcoma_maxillary | ||
|id=C3093 | |id=C3093 | ||
|ontology_enrichment_celltype=CL: | |ontology_enrichment_celltype=CL:0002321!4.04e-11!250;CL:0000066!5.62e-10!253;CL:0000548!3.61e-09!679;CL:0000255!3.61e-09!679;CL:0000223!3.04e-07!58 | ||
|ontology_enrichment_disease=DOID:162! | |ontology_enrichment_disease=DOID:162!5.24e-12!235;DOID:14566!2.06e-11!239;DOID:0050686!4.48e-09!137;DOID:0050687!2.34e-08!143 | ||
|ontology_enrichment_uberon=UBERON:0003914! | |ontology_enrichment_uberon=UBERON:0003914!4.33e-11!117;UBERON:0002100!2.76e-09!199;UBERON:0009569!1.04e-08!112;UBERON:0000466!3.85e-08!117;UBERON:0001637!2.51e-07!42;UBERON:0003509!2.51e-07!42;UBERON:0004572!2.51e-07!42;UBERON:0000475!8.86e-07!264 | ||
|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189155233371077!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0114935125629791!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00658434440274814!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278274376759442!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0323612703684295!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0320435739213367!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0319079091611752!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0460108476379565!ELK4#2005;2:10.823787772312:0.0109128471951648:0.0401750801302765!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00759927986527292!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00894827714039407!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108306469034149!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0127617564417516!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0185755977700877!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293217859401666!NFYA#4800;3:18.4255806998305:0.000159813550781416:0.00199007600215337!NFYB#4801;3:16.7597932535365:0.000212364992329618:0.00244938569121071!NRF1#4899;3:12.2102794477109:0.000549217240102001:0.00469507238593868!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0172299095264229!POU2F2#5452;3:9.10612405774252:0.00132416519268213:0.00879512137869047!RFX5#5993;3:12.0479108271951:0.000571724605031258:0.00482976187210706!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275436590158371!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0245437904154867!SP2#6668;3:26.1535304938446:5.58768218891694e-05:0.000937464964061519!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00540550762813276!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.0024735636996621!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00613001998535796!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0189527315513567!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0327945971224608!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0139599068149811 | |tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189155233371077!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0114935125629791!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00658434440274814!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278274376759442!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0323612703684295!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0320435739213367!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0319079091611752!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0460108476379565!ELK4#2005;2:10.823787772312:0.0109128471951648:0.0401750801302765!ETS1#2113;3:9.72876092220234:0.00108584009258484:0.00759927986527292!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00894827714039407!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108306469034149!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0127617564417516!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0185755977700877!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293217859401666!NFYA#4800;3:18.4255806998305:0.000159813550781416:0.00199007600215337!NFYB#4801;3:16.7597932535365:0.000212364992329618:0.00244938569121071!NRF1#4899;3:12.2102794477109:0.000549217240102001:0.00469507238593868!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0172299095264229!POU2F2#5452;3:9.10612405774252:0.00132416519268213:0.00879512137869047!RFX5#5993;3:12.0479108271951:0.000571724605031258:0.00482976187210706!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275436590158371!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0245437904154867!SP2#6668;3:26.1535304938446:5.58768218891694e-05:0.000937464964061519!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00540550762813276!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.0024735636996621!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00613001998535796!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0189527315513567!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0327945971224608!ZBTB7A#51341;3:7.3519093078759:0.00251625586028227:0.0139599068149811 | ||
|tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.0226057,0.114046,0.0180314,0.208242,5.16431e-05,0.0844722,0.000210711,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.000323983,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,2.76282e-05,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.00011266,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,1.07995e-05,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.00481292,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.00526876,0.00327964,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.00378931,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0028727,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.000382886,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,2.13093e-05,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.0413643,0.00679439,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.0103428,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.00695194,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.0187509,0.122935,0.228812,0.112671,0.0470731,0.00314485,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.0137227,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.014161,0.0019681,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.000475773,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.00497632,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.000387468,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.003405,0.00320178,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.0691572,0.635872,0.563047,0.252249,1.82637e-07,0.335423,0.0790073,0.261553,0.0222487,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.178727,0.0724671,0.271958,0.292154,0.405773,0.39729,0.581713,0.0139202,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.00207312,0.107929,0.376924,0.463191,0.280025,0.528324,0.168255,0.370782,0.415647,0.484505,0.253571,0.0424424,0.301787,0.481778,0.316882,0.223503,0.155672,0.0669244,0.283727,0.314747,0.21363,0.291709,0.448095,0.576651,0.416816,0.0478086,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.00166394,0.0964442,0.161148,0.275351,0.236471,0.185661,0.0684159,0.535598,0.270984,0.625945,0.0340542,0.513852,0.522083,0.0338468,0.281576,0.0271848,0.163244,0.00229986,0.0730934,0.184794,0.596648,0.176034,0.581837,0.412837,0.305671,0.546839,0.0477082,0.448039,0.218623,0.0550136,0.333034,0.0451077,0.0747529,0.229003,0.0897888,4.04707e-05,0.0338328,0.294698,0.34331,0.138202,0.289204,0.0605279,0.683186,0.278044,0.490301,0.428671,0.00238478,0.336314,0.19763,0.15631,0.567452,0.421464,0.141711,0.420626,0.516462,0.0488795,0.335105,0.144809,0.145539,0.08628,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.0526965,0.305777,0.601433,0.503082,0.0391885,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.40841,0.206222,0.525396,0.651524,0.437176,0.269226,0.339277,0.0479524,0.281425,0.141758,0.124432,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.0688327,0.182325,0.34988,0.475069,0.404569,0.0204872,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.00168976,0.144322,0.223391,0.203656,0.0216577,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.0842821,0.0179103,0.000538324,0.279795,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.0205132,0.132201,0.188694,0.0481795,0.0214786,0.016022,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.173708,0.141119,0.0241568,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.0123828,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.00477066,0.000112257,0.137332,0.0145999,0.0656973,0.211746,0.026334,0.0801488,0.0757897,0.013859,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.0355977,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.0694567,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.000276129,0.0286025,0.0470027,0.000564671,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.0144628,0.237101,7.48288e-08,0.0761239,0.0158143,0.0818785,0.182701,0.0637246,0.147698,0.141463,0.167267,0.140622,0.0889592,0.00643528,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.000236316,0.128564,0.131452,0.112518,0.120459,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.0425274,0.00049486,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.0899568,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.000919297,1.28372e-06,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.0298844,0.0759837,0.0457643,0.000665506,0.194941,0.0257725,0.101607,0.00771936,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.15663,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.000702525,0.170295,0.193653,0.137219,0.00238639,0.251466,0.288096,0.000308572,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.0128995,0.0546539,0.000874248,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.0743925,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.115047,0.37006,0.42622,0.120472,0.00150618,0.396996,0.36145,0.406019,0.381071,0.216033,0.0863135,0.432035,0.722159,0.390366,0.000645036,0.0334527,0.443185,0.522904,0.00142909,1.75287e-06,0.227104,0.166658,0.617852,0.38649,0.284625,0.00583062,0.55194,0.729153,0.28907,0.164197,0.000461108,0.287881,0.574635,0.478174,0.0642229,0.468444,0.258219,0.446557,0.243383,0.191695,0.0140783,0.149257,0.00650842,0.161598,0.751174,0.277094,0.150692,0.21803,0.37357,0.0704414,0.477353,0.00104348,0.399222,2.48085e-05,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.0448825,0.0513026,0.314429,0.181415,0.282286,0.0674279,0.00305733,0.408413,0.0374737,0.322213,0.0931134,0.33942,0.0700181,0.387276,0.522605,0.000283063,0.537348,0.222037,0.416621,0.416292,0.462712,0.0115406,0.579431,0.204817,0.452428,0.0101228,0.103502,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.0805711,0.170369,0.408861,0.0111982,0.178743,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.00977892,0.275347,0.00388821,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.159081,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.0254647,5.68721e-06,0.0529819,0.459728,0.283463,0.0517073,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.0209984,0.608187,0.0870376,0.332774,0.0406989,0.299887,0.634365,0.205413,0.00105378,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.00129444,0.0719199,0.00386277,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.00176345,0.447185,0.179412,0.193601,0.220904,0.222977,0.000913176,2.68031e-06,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,7.13056e-08,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.00632223,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.00193951,0.207559,0.141867,3.16394e-06,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.000648679,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,4.56072e-05,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.00691586,0.00144649,0.190993,0.281727,0.00480369,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.0133429,0.271275,0.071111,0.00414049,0.101021,0.222548,0.175934,0.157274,0.0251447,0.252796,0.205954,0.361435 | |tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.0460856,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.0226057,0.114046,0.0180314,0.208242,5.16431e-05,0.0844722,0.000210711,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.000323983,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,2.76282e-05,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.00011266,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,1.07995e-05,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.00481292,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.00526876,0.00327964,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.0415725,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.00378931,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0028727,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.000382886,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,2.13093e-05,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.0413643,0.00679439,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0541353,0.0799324,0.090079,0.0103428,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.00695194,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.0187509,0.122935,0.228812,0.112671,0.0470731,0.00314485,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.0137227,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.0538541,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.014161,0.0019681,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.000475773,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.00497632,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.000387468,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.003405,0.00320178,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.0691572,0.635872,0.563047,0.252249,1.82637e-07,0.335423,0.0790073,0.261553,0.0222487,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.178727,0.0724671,0.271958,0.292154,0.405773,0.39729,0.581713,0.0139202,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.00207312,0.107929,0.376924,0.463191,0.280025,0.528324,0.168255,0.370782,0.415647,0.484505,0.253571,0.0424424,0.301787,0.481778,0.316882,0.223503,0.155672,0.0669244,0.283727,0.314747,0.21363,0.291709,0.448095,0.576651,0.416816,0.0478086,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.00166394,0.0964442,0.161148,0.275351,0.236471,0.185661,0.0684159,0.535598,0.270984,0.625945,0.0340542,0.513852,0.522083,0.0338468,0.281576,0.0271848,0.163244,0.00229986,0.0730934,0.184794,0.596648,0.176034,0.581837,0.412837,0.305671,0.546839,0.0477082,0.448039,0.218623,0.0550136,0.333034,0.0451077,0.0747529,0.229003,0.0897888,4.04707e-05,0.0338328,0.294698,0.34331,0.138202,0.289204,0.0605279,0.683186,0.278044,0.490301,0.428671,0.00238478,0.336314,0.19763,0.15631,0.567452,0.421464,0.141711,0.420626,0.516462,0.0488795,0.335105,0.144809,0.145539,0.08628,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.0526965,0.305777,0.601433,0.503082,0.0391885,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.40841,0.206222,0.525396,0.651524,0.437176,0.269226,0.339277,0.0479524,0.281425,0.141758,0.124432,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.0688327,0.182325,0.34988,0.475069,0.404569,0.0204872,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.00168976,0.144322,0.223391,0.203656,0.0216577,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.0842821,0.0179103,0.000538324,0.279795,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.0205132,0.132201,0.188694,0.0481795,0.0214786,0.016022,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.173708,0.141119,0.0241568,0.0300692,0.131551,0.0445237,0.052362,0.0235128,0.0123828,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.00477066,0.000112257,0.137332,0.0145999,0.0656973,0.211746,0.026334,0.0801488,0.0757897,0.013859,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.0355977,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.0694567,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.000276129,0.0286025,0.0470027,0.000564671,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.0144628,0.237101,7.48288e-08,0.0761239,0.0158143,0.0818785,0.182701,0.0637246,0.147698,0.141463,0.167267,0.140622,0.0889592,0.00643528,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.000236316,0.128564,0.131452,0.112518,0.120459,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.0425274,0.00049486,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.0899568,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.000919297,1.28372e-06,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.0298844,0.0759837,0.0457643,0.000665506,0.194941,0.0257725,0.101607,0.00771936,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.15663,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.000702525,0.170295,0.193653,0.137219,0.00238639,0.251466,0.288096,0.000308572,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.0128995,0.0546539,0.000874248,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.0743925,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.115047,0.37006,0.42622,0.120472,0.00150618,0.396996,0.36145,0.406019,0.381071,0.216033,0.0863135,0.432035,0.722159,0.390366,0.000645036,0.0334527,0.443185,0.522904,0.00142909,1.75287e-06,0.227104,0.166658,0.617852,0.38649,0.284625,0.00583062,0.55194,0.729153,0.28907,0.164197,0.000461108,0.287881,0.574635,0.478174,0.0642229,0.468444,0.258219,0.446557,0.243383,0.191695,0.0140783,0.149257,0.00650842,0.161598,0.751174,0.277094,0.150692,0.21803,0.37357,0.0704414,0.477353,0.00104348,0.399222,2.48085e-05,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.0448825,0.0513026,0.314429,0.181415,0.282286,0.0674279,0.00305733,0.408413,0.0374737,0.322213,0.0931134,0.33942,0.0700181,0.387276,0.522605,0.000283063,0.537348,0.222037,0.416621,0.416292,0.462712,0.0115406,0.579431,0.204817,0.452428,0.0101228,0.103502,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.0805711,0.170369,0.408861,0.0111982,0.178743,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.00977892,0.275347,0.00388821,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.159081,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.0254647,5.68721e-06,0.0529819,0.459728,0.283463,0.0517073,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.0209984,0.608187,0.0870376,0.332774,0.0406989,0.299887,0.634365,0.205413,0.00105378,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.00129444,0.0719199,0.00386277,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.00176345,0.447185,0.179412,0.193601,0.220904,0.222977,0.000913176,2.68031e-06,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,7.13056e-08,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.00632223,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.00193951,0.207559,0.141867,3.16394e-06,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.000648679,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,4.56072e-05,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.00691586,0.00144649,0.190993,0.281727,0.00480369,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.0133429,0.271275,0.071111,0.00414049,0.101021,0.222548,0.175934,0.157274,0.0251447,0.252796,0.205954,0.361435 | ||
}} | }} | ||
Revision as of 14:48, 19 October 2012
Full id: C3093_mesenchymal_gastric_oral_glioma_liver_osteosarcoma_maxillary
Phase1 CAGE Peaks
| Hg19::chr11:118927755..118927766,- | p7@HYOU1 |
| Hg19::chr11:118927792..118927803,- | p6@HYOU1 |
| Hg19::chr11:118927817..118927862,- | p1@HYOU1 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 4.04e-11 | 250 |
| epithelial cell | 5.62e-10 | 253 |
| animal cell | 3.61e-09 | 679 |
| eukaryotic cell | 3.61e-09 | 679 |
| endodermal cell | 3.04e-07 | 58 |
| Ontology term | p-value | n |
|---|---|---|
| epithelial tube | 4.33e-11 | 117 |
| trunk | 2.76e-09 | 199 |
| subdivision of trunk | 1.04e-08 | 112 |
| immaterial anatomical entity | 3.85e-08 | 117 |
| artery | 2.51e-07 | 42 |
| arterial blood vessel | 2.51e-07 | 42 |
| arterial system | 2.51e-07 | 42 |
| organism subdivision | 8.86e-07 | 264 |
| Ontology term | p-value | n |
|---|---|---|
| cancer | 5.24e-12 | 235 |
| disease of cellular proliferation | 2.06e-11 | 239 |
| organ system cancer | 4.48e-09 | 137 |
| cell type cancer | 2.34e-08 | 143 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.0189155233371077 |
| CEBPB#1051 | 3 | 7.97114762582482 | 0.00197418705528856 | 0.0114935125629791 |
| CHD2#1106 | 3 | 10.3440228341169 | 0.000903370110274688 | 0.00658434440274814 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0278274376759442 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0323612703684295 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.0320435739213367 |
| EGR1#1958 | 3 | 4.98817909481014 | 0.00805648813738344 | 0.0319079091611752 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0460108476379565 |
| ELK4#2005 | 2 | 10.823787772312 | 0.0109128471951648 | 0.0401750801302765 |
| ETS1#2113 | 3 | 9.72876092220234 | 0.00108584009258484 | 0.00759927986527292 |
| FOS#2353 | 3 | 8.9979553088944 | 0.00137249927241713 | 0.00894827714039407 |
| HMGN3#9324 | 3 | 8.17854772335059 | 0.00182776694216421 | 0.0108306469034149 |
| IRF1#3659 | 3 | 7.6371637535639 | 0.00224469274729724 | 0.0127617564417516 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0185755977700877 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.0293217859401666 |
| NFYA#4800 | 3 | 18.4255806998305 | 0.000159813550781416 | 0.00199007600215337 |
| NFYB#4801 | 3 | 16.7597932535365 | 0.000212364992329618 | 0.00244938569121071 |
| NRF1#4899 | 3 | 12.2102794477109 | 0.000549217240102001 | 0.00469507238593868 |
| PAX5#5079 | 3 | 6.66956553117783 | 0.00337029099967726 | 0.0172299095264229 |
| POU2F2#5452 | 3 | 9.10612405774252 | 0.00132416519268213 | 0.00879512137869047 |
| RFX5#5993 | 3 | 12.0479108271951 | 0.000571724605031258 | 0.00482976187210706 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0275436590158371 |
| SP1#6667 | 3 | 5.6983813781409 | 0.00540396270171217 | 0.0245437904154867 |
| SP2#6668 | 3 | 26.1535304938446 | 5.58768218891694e-05 | 0.000937464964061519 |
| TAF7#6879 | 3 | 11.4330694049239 | 0.000669018198194583 | 0.00540550762813276 |
| TFAP2A#7020 | 3 | 16.518634373045 | 0.000221803388076634 | 0.0024735636996621 |
| TFAP2C#7022 | 3 | 10.8092286098602 | 0.000791674657575313 | 0.00613001998535796 |
| USF1#7391 | 3 | 6.36149927720796 | 0.0038840405729056 | 0.0189527315513567 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0327945971224608 |
| ZBTB7A#51341 | 3 | 7.3519093078759 | 0.00251625586028227 | 0.0139599068149811 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
