MCL coexpression mm9:5: Difference between revisions
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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0044424;intracellular part;3.62326388310158e-07;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19359,59026,17314,71207,13207,21973,16169,13018,70356,67437,72459,545389,20874,17999,97212,14030,22041,227292,68134,19712,59001,14828,69632,54343,70099,11430,53379,16828,67382,24136,102103,69219,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,13209,94279,20658,56070,71911,17345,50884,232341,19878,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,16427,19134,235132,109910,17975,14081,15525,16971,192159,12321,109624,19877,16451,71514,56195,15494,20402,17879,12330,11303,11657,18453,27367,22027,66660,243382,13714,11737,13690,231386,228005,208643,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,51810,16573!GO:0003723;RNA binding;7.22117747526009e-07;20658,68134,71514,56195,170791,53379,66660,208643,83486,81702,224902,17975,13207,20823,233908,72459,14030,192159,13209!GO:0005622;intracellular;7.22117747526009e-07;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19765,19359,59026,17314,71207,13207,21973,16169,13018,70356,67437,72459,545389,20874,17999,97212,14030,22041,227292,68134,19712,59001,14828,69632,54343,70099,11430,53379,16828,67382,24136,102103,69219,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,13209,94279,20658,56070,71911,17345,50884,232341,19878,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,16427,19134,235132,109910,17975,14081,15525,16971,192159,12321,109624,19877,16451,71514,56195,15494,20402,17879,12330,11303,11657,18453,27367,22027,66660,243382,13714,11737,13690,231386,228005,208643,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,51810,16573!GO:0044237;cellular metabolic process;2.87852769636116e-06;19684,18949,170791,56791,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,13018,11806,72459,20874,17999,97212,14030,19712,16337,54343,70099,11430,53379,16828,24136,69219,226982,224902,12317,19647,14661,75956,224836,16426,233908,74754,238055,56070,50884,232341,19878,20588,230163,67241,13688,109754,24061,56307,14211,81702,230594,19134,235132,67615,109910,99571,14081,192159,12266,19877,16451,71514,15494,56195,20363,12330,11303,27367,22027,18453,66660,13714,243382,13690,30924,231386,208643,228005,118451,22589,20185,15516,22139,56445,110135,20823,67039,22385,107503!GO:0043231;intracellular membrane-bound organelle;2.96137180970704e-06;66972,18949,170791,81910,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,16169,13018,67437,72459,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,110446,74754,233908,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,19877,71514,15494,56195,12330,11303,22027,18453,66660,13714,243382,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503!GO:0043227;membrane-bound organelle;2.96137180970704e-06;66972,18949,170791,81910,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,16169,13018,67437,72459,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,110446,74754,233908,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,19877,71514,15494,56195,12330,11303,22027,18453,66660,13714,243382,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503!GO:0044238;primary metabolic process;3.33100339929591e-06;19684,18949,170791,56791,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,13018,11806,72459,20874,17999,97212,14030,19712,16337,54343,70099,11430,53379,16828,24136,69219,226982,224902,12317,19647,14661,75956,224836,16426,233908,74754,238055,56070,50884,232341,19878,20588,230163,67241,13688,109754,24061,56307,14211,81702,230594,19134,235132,67615,109910,99571,14081,192159,12266,19877,16451,71514,15494,56195,12330,11303,27367,22027,18453,66660,13714,243382,13690,30924,231386,208643,228005,118451,22589,20185,15516,22139,56445,110135,20823,67039,22385,107503!GO:0043229;intracellular organelle;3.97165197277932e-06;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19359,59026,17314,13207,21973,16169,13018,67437,72459,545389,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,109624,19877,16451,71514,56195,15494,12330,11303,17879,27367,22027,18453,66660,243382,13714,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,16573!GO:0043226;organelle;3.97165197277932e-06;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19359,59026,17314,13207,21973,16169,13018,67437,72459,545389,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,109624,19877,16451,71514,56195,15494,12330,11303,17879,27367,22027,18453,66660,243382,13714,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,16573!GO:0003676;nucleic acid binding;5.40959403463194e-06;20658,56070,18949,170791,12387,20588,13688,11804,16599,83486,81702,230594,233833,235132,109910,17975,59026,17314,13207,21973,13018,72459,20874,14030,192159,213109,68134,19712,59001,71514,56195,20402,53379,66660,13714,13690,231386,24136,208643,226982,22589,20185,224902,77087,19647,18616,20823,233908,67039,107503,13209!GO:0043170;macromolecule metabolic process;1.22366369133945e-05;19684,18949,170791,56791,12387,225055,16599,66921,54710,19359,59026,17314,13207,21973,11806,13018,72459,20874,17999,14030,19712,16337,54343,70099,53379,16828,24136,69219,226982,224902,12317,19647,75956,224836,16426,74754,233908,56070,50884,232341,19878,20588,230163,67241,13688,24061,56307,14211,81702,19134,235132,67615,109910,99571,192159,12266,16451,19877,56195,71514,12330,11303,27367,22027,18453,66660,13714,243382,13690,231386,208643,228005,118451,22589,20185,15516,56445,110135,20823,22385,67039,107503!GO:0000166;nucleotide binding;3.83375562391192e-05;170791,232341,19878,67241,109754,24061,83486,14211,81702,19134,17975,15525,13207,21973,72459,20874,14030,16337,16451,19877,56195,71514,11303,17879,14828,70099,11430,53379,22027,66660,226982,22589,15516,224902,14661,20823,16573,13209!GO:0005634;nucleus;0.000140296930652779;20658,56070,18949,17345,170791,12387,225055,20588,67241,11804,16599,24061,66921,83486,14211,81702,230594,19134,235132,109910,19359,17975,59026,17314,13207,21973,16169,13018,16971,72459,14030,192159,227292,68134,19712,59001,71514,56195,54343,70099,53379,66660,13714,11737,67382,231386,24136,228005,102103,66625,22589,20185,224902,19647,18616,100710,75956,15161,98415,20823,22385,233908,107503!GO:0008380;RNA splicing;0.000668694018073805;18949,71514,56195,19134,170791,75956,13207,53379,192159,66921!GO:0006950;response to stress;0.000754964432564087;12266,68134,71514,14828,14268,22027,18816,67241,16644,24061,22589,81702,15516,99571,17314,15525,19359,110135,20874!GO:0006397;mRNA processing;0.000872578527761319;18949,71514,56195,19134,170791,75956,13207,53379,67039,192159,66921!GO:0005515;protein binding;0.000872578527761319;19684,170791,16002,56791,12387,20971,19765,13207,16169,11806,13018,17999,14030,19712,59001,16337,69632,54343,14828,70099,14268,50706,53379,16828,11552,12317,19647,20658,56070,232341,19878,13171,11804,13688,24061,56307,14211,230594,235132,99571,17975,16971,192159,109624,12266,16451,19877,56195,20402,12330,11303,17879,22027,13690,11737,30924,208643,231887,22589,192196,20185,15516,56524,56445,22139,110135,15161,22385,107503,16573!GO:0043283;biopolymer metabolic process;0.000872578527761319;56070,18949,170791,56791,232341,12387,19878,225055,20588,67241,16599,24061,66921,54710,14211,81702,19134,235132,67615,109910,19359,59026,17314,13207,21973,11806,13018,72459,20874,17999,14030,192159,19877,19712,16337,16451,71514,56195,11303,54343,70099,53379,18453,66660,13714,243382,13690,231386,24136,208643,69219,22589,20185,224902,19647,75956,224836,20823,67039,74754,22385,233908,107503!GO:0016071;mRNA metabolic process;0.00221126137779433;18949,71514,56195,19134,170791,75956,13207,53379,67039,192159,66921!GO:0005681;spliceosome;0.00395269212901215;18949,56195,19134,13207,53379,75956,192159,66921!GO:0005577;fibrinogen complex;0.00517896580187711;110135,99571!GO:0006396;RNA processing;0.00616412839769402;18949,71514,56195,19134,170791,75956,13207,53379,20823,67039,192159,66921!GO:0006259;DNA metabolic process;0.00951284411529486;22589,20185,14211,81702,71514,70099,19359,17314,21973,22385,13018,20874,20588,67241,24061!GO:0051082;unfolded protein binding;0.00951284411529486;22027,15516,12317,12330,56445!GO:0005737;cytoplasm;0.0101531863423146;66972,19684,18949,81910,12387,52430,54710,19359,71207,16169,70356,67437,545389,20874,17999,97212,14030,22041,14828,69632,70099,11430,16828,102103,69219,68018,224902,12317,14661,110446,74754,233908,16784,238055,13209,94279,71911,17345,50884,232341,19878,13171,109754,14211,81702,230594,16427,14081,15525,16971,12321,109624,19877,15494,20402,12330,11303,17879,11657,27367,22027,18453,243382,13690,11737,208643,118451,15516,18616,15161,107503,16573!GO:0030301;cholesterol transport;0.0113042466776251;11806,238055,11303!GO:0015918;sterol transport;0.0128287828346694;11806,238055,11303!GO:0030261;chromosome condensation;0.0128287828346694;21973,14211,70099!GO:0004842;ubiquitin-protein ligase activity;0.0144604720545687;225055,19647,17999,67615,56791,59026!GO:0006281;DNA repair;0.0148437780127015;22589,81702,71514,20874,67241,24061,19359,17314!GO:0008639;small protein conjugating enzyme activity;0.0150777258332683;225055,19647,17999,67615,56791,59026!GO:0007492;endoderm development;0.0156991530975392;12387,81702,50884!GO:0033344;cholesterol efflux;0.0156991530975392;11806,11303!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0164783706334206;56070,18949,170791,12387,20588,67241,16599,24061,66921,14211,81702,230594,19134,235132,109910,19359,17314,13207,21973,13018,72459,20874,14030,192159,19712,56195,71514,54343,70099,53379,13714,66660,13690,231386,24136,208643,22589,20185,224902,75956,20823,233908,22385,67039,107503!GO:0044267;cellular protein metabolic process;0.0179013714409665;19684,50884,56791,232341,19878,225055,13688,56307,54710,19134,67615,99571,19359,59026,11806,20874,17999,12266,19877,16337,16451,11303,12330,27367,22027,18453,243382,13690,208643,228005,118451,226982,69219,15516,12317,19647,56445,110135,224836,74754!GO:0044446;intracellular organelle part;0.0194505841346077;94279,56070,18949,17345,71911,81910,12387,20588,109754,66921,233833,19134,17975,13207,21973,67437,545389,97212,192159,109624,19712,15494,56195,17879,54343,11430,53379,11737,118451,22589,14661,75956,110446,22385,107503,16784,16573!GO:0044422;organelle part;0.0205097943855523;94279,56070,18949,17345,71911,81910,12387,20588,109754,66921,233833,19134,17975,13207,21973,67437,545389,97212,192159,109624,19712,15494,56195,17879,54343,11430,53379,11737,118451,22589,14661,75956,110446,22385,107503,16784,16573!GO:0004857;enzyme inhibitor activity;0.0211725912555644;12266,232341,16426,20317,18816,30924,59083,16644!GO:0008135;translation factor activity, nucleic acid binding;0.0212390068569723;226982,213109,13690,13688,208643!GO:0003743;translation initiation factor activity;0.0212390068569723;226982,13690,13688,208643!GO:0019787;small conjugating protein ligase activity;0.0212390068569723;225055,19647,17999,67615,56791,59026!GO:0065007;biological regulation;0.0212390068569723;19684,56070,18949,170791,50884,16002,232341,12387,20588,16644,13688,11804,16599,83486,230594,235132,109910,99571,19765,17314,13207,21973,11806,13018,16971,72459,14030,22041,12266,109624,19877,19712,71514,69632,54343,98366,18453,66660,13714,13690,30924,231386,24136,208643,20185,224902,12317,100710,110135,15161,22385,233908,20317,107503!GO:0044260;cellular macromolecule metabolic process;0.0214516269381761;19684,50884,56791,232341,19878,225055,13688,56307,54710,19134,67615,99571,19359,59026,11806,20874,17999,12266,19877,16337,16451,11303,12330,27367,22027,18453,243382,13690,208643,228005,118451,226982,69219,15516,12317,19647,56445,110135,224836,74754!GO:0007059;chromosome segregation;0.0214516269381761;21973,14211,70099,24061!GO:0010467;gene expression;0.0223822014496294;56070,18949,170791,12387,20588,13688,16599,66921,230594,19134,235132,109910,13207,21973,13018,72459,14030,192159,19712,56195,71514,54343,53379,27367,13714,66660,13690,231386,24136,208643,118451,226982,20185,224902,75956,20823,233908,22385,67039,107503!GO:0030554;adenyl nucleotide binding;0.0237210511358166;19877,16451,16337,17879,11303,14828,11430,232341,22027,19878,67241,109754,24061,22589,81702,15516,19134,14661,15525,13207,21973,20874,16573,13209!GO:0030529;ribonucleoprotein complex;0.0237210511358166;18949,56195,19134,75956,13207,53379,27367,20823,51810,192159,118451,66921!GO:0006695;cholesterol biosynthetic process;0.0237210511358166;74754,11806,109754!GO:0006446;regulation of translational initiation;0.0237210511358166;13690,13688,208643!GO:0005783;endoplasmic reticulum;0.0245550935916827;68018,15494,12317,12330,14828,14081,81910,18453,22027,16169,74754,67437,238055,109754,12321!GO:0016881;acid-amino acid ligase activity;0.0298046974205204;225055,19647,17999,67615,56791,59026!GO:0006457;protein folding;0.0305199560433727;22027,15516,12317,12330,228005,56445!GO:0050794;regulation of cellular process;0.0320641076698631;19684,56070,18949,170791,16002,232341,12387,20588,13688,16599,83486,230594,235132,109910,19765,17314,13207,21973,11806,13018,16971,72459,14030,12266,19712,19877,71514,69632,54343,98366,66660,13714,13690,30924,231386,24136,208643,20185,224902,12317,100710,15161,22385,233908,107503!GO:0008286;insulin receptor signaling pathway;0.0320641076698631;16337,20402,13688!GO:0006974;response to DNA damage stimulus;0.0321671119112917;22589,81702,71514,20874,67241,24061,19359,17314!GO:0019538;protein metabolic process;0.0321671119112917;19684,50884,56791,232341,19878,225055,13688,56307,54710,19134,67615,99571,19359,59026,11806,20874,17999,12266,19877,16337,16451,11303,12330,27367,22027,18453,243382,13690,208643,228005,118451,226982,69219,15516,12317,19647,56445,110135,224836,74754!GO:0044428;nuclear part;0.0321671119112917;56070,19712,18949,56195,17345,54343,12387,53379,11737,20588,66921,22589,19134,17975,13207,75956,21973,107503,192159!GO:0016070;RNA metabolic process;0.032655880461774;56070,18949,170791,12387,20588,16599,66921,19134,235132,109910,13207,21973,13018,72459,14030,192159,19712,56195,71514,54343,53379,13714,66660,13690,231386,208643,24136,20185,224902,75956,233908,22385,67039,20823,107503!GO:0045176;apical protein localization;0.032655880461774;19684,50884!GO:0005694;chromosome;0.0385603215515507;22589,14211,19134,17345,70099,21973,22385,20588,67241,24061!GO:0000041;transition metal ion transport;0.0391584339074153;94279,67547,12870,22041!GO:0004866;endopeptidase inhibitor activity;0.0427208643262824;12266,16426,18816,20317,59083,16644!GO:0016126;sterol biosynthetic process;0.0435931261466643;74754,11806,109754!GO:0030414;protease inhibitor activity;0.0457060188718896;12266,16426,18816,20317,59083,16644!GO:0009719;response to endogenous stimulus;0.0457060188718896;22589,81702,71514,20874,67241,24061,19359,17314!GO:0000267;cell fraction;0.0471321697442764;109624,12317,20402,14081,232341,12387,18453,238055,16784,16971,20493,109754!GO:0005524;ATP binding;0.0487694526171755;19877,16451,16337,17879,11303,14828,232341,22027,19878,67241,24061,22589,81702,15516,19134,14661,15525,13207,21973,20874,16573,13209!GO:0008105;asymmetric protein localization;0.0490638162174911;19684,50884!GO:0046914;transition metal ion binding;0.0491273373680955;94279,19878,225055,16599,56307,83486,230594,235132,109910,17314,71207,13018,14030,22041,213109,19712,19877,67547,20402,11657,98366,243382,24136,192196,69219,22589,12317,19647,12870,18616,56445,224836,233908,22385!GO:0008203;cholesterol metabolic process;0.04995098518516;74754,11806,11303,109754!}} | {{MCL_coexpression_mm9 | ||
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| |||
|gostat_on_MCL_coexpression=GO:0044424;intracellular part;3.62326388310158e-07;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19359,59026,17314,71207,13207,21973,16169,13018,70356,67437,72459,545389,20874,17999,97212,14030,22041,227292,68134,19712,59001,14828,69632,54343,70099,11430,53379,16828,67382,24136,102103,69219,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,13209,94279,20658,56070,71911,17345,50884,232341,19878,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,16427,19134,235132,109910,17975,14081,15525,16971,192159,12321,109624,19877,16451,71514,56195,15494,20402,17879,12330,11303,11657,18453,27367,22027,66660,243382,13714,11737,13690,231386,228005,208643,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,51810,16573!GO:0003723;RNA binding;7.22117747526009e-07;20658,68134,71514,56195,170791,53379,66660,208643,83486,81702,224902,17975,13207,20823,233908,72459,14030,192159,13209!GO:0005622;intracellular;7.22117747526009e-07;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19765,19359,59026,17314,71207,13207,21973,16169,13018,70356,67437,72459,545389,20874,17999,97212,14030,22041,227292,68134,19712,59001,14828,69632,54343,70099,11430,53379,16828,67382,24136,102103,69219,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,13209,94279,20658,56070,71911,17345,50884,232341,19878,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,16427,19134,235132,109910,17975,14081,15525,16971,192159,12321,109624,19877,16451,71514,56195,15494,20402,17879,12330,11303,11657,18453,27367,22027,66660,243382,13714,11737,13690,231386,228005,208643,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,51810,16573!GO:0044237;cellular metabolic process;2.87852769636116e-06;19684,18949,170791,56791,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,13018,11806,72459,20874,17999,97212,14030,19712,16337,54343,70099,11430,53379,16828,24136,69219,226982,224902,12317,19647,14661,75956,224836,16426,233908,74754,238055,56070,50884,232341,19878,20588,230163,67241,13688,109754,24061,56307,14211,81702,230594,19134,235132,67615,109910,99571,14081,192159,12266,19877,16451,71514,15494,56195,20363,12330,11303,27367,22027,18453,66660,13714,243382,13690,30924,231386,208643,228005,118451,22589,20185,15516,22139,56445,110135,20823,67039,22385,107503!GO:0043231;intracellular membrane-bound organelle;2.96137180970704e-06;66972,18949,170791,81910,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,16169,13018,67437,72459,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,110446,74754,233908,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,19877,71514,15494,56195,12330,11303,22027,18453,66660,13714,243382,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503!GO:0043227;membrane-bound organelle;2.96137180970704e-06;66972,18949,170791,81910,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,16169,13018,67437,72459,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,110446,74754,233908,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,19877,71514,15494,56195,12330,11303,22027,18453,66660,13714,243382,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503!GO:0044238;primary metabolic process;3.33100339929591e-06;19684,18949,170791,56791,12387,225055,16599,52430,66921,54710,19359,59026,17314,13207,21973,13018,11806,72459,20874,17999,97212,14030,19712,16337,54343,70099,11430,53379,16828,24136,69219,226982,224902,12317,19647,14661,75956,224836,16426,233908,74754,238055,56070,50884,232341,19878,20588,230163,67241,13688,109754,24061,56307,14211,81702,230594,19134,235132,67615,109910,99571,14081,192159,12266,19877,16451,71514,15494,56195,12330,11303,27367,22027,18453,66660,13714,243382,13690,30924,231386,208643,228005,118451,22589,20185,15516,22139,56445,110135,20823,67039,22385,107503!GO:0043229;intracellular organelle;3.97165197277932e-06;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19359,59026,17314,13207,21973,16169,13018,67437,72459,545389,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,109624,19877,16451,71514,56195,15494,12330,11303,17879,27367,22027,18453,66660,243382,13714,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,16573!GO:0043226;organelle;3.97165197277932e-06;66972,19684,18949,170791,81910,12387,225055,16599,52430,66921,54710,233833,19359,59026,17314,13207,21973,16169,13018,67437,72459,545389,97212,14030,22041,227292,68134,19712,59001,14828,54343,70099,11430,53379,67382,24136,102103,68018,224902,12317,19647,14661,75956,98415,233908,110446,74754,16784,238055,94279,20658,56070,71911,17345,20588,13171,67241,11804,109754,24061,83486,14211,81702,230594,19134,235132,109910,14081,17975,16971,192159,12321,109624,19877,16451,71514,56195,15494,12330,11303,17879,27367,22027,18453,66660,243382,13714,11737,231386,228005,118451,66625,22589,20185,15516,18616,100710,15161,20823,22385,107503,16573!GO:0003676;nucleic acid binding;5.40959403463194e-06;20658,56070,18949,170791,12387,20588,13688,11804,16599,83486,81702,230594,233833,235132,109910,17975,59026,17314,13207,21973,13018,72459,20874,14030,192159,213109,68134,19712,59001,71514,56195,20402,53379,66660,13714,13690,231386,24136,208643,226982,22589,20185,224902,77087,19647,18616,20823,233908,67039,107503,13209!GO:0043170;macromolecule metabolic process;1.22366369133945e-05;19684,18949,170791,56791,12387,225055,16599,66921,54710,19359,59026,17314,13207,21973,11806,13018,72459,20874,17999,14030,19712,16337,54343,70099,53379,16828,24136,69219,226982,224902,12317,19647,75956,224836,16426,74754,233908,56070,50884,232341,19878,20588,230163,67241,13688,24061,56307,14211,81702,19134,235132,67615,109910,99571,192159,12266,16451,19877,56195,71514,12330,11303,27367,22027,18453,66660,13714,243382,13690,231386,208643,228005,118451,22589,20185,15516,56445,110135,20823,22385,67039,107503!GO:0000166;nucleotide binding;3.83375562391192e-05;170791,232341,19878,67241,109754,24061,83486,14211,81702,19134,17975,15525,13207,21973,72459,20874,14030,16337,16451,19877,56195,71514,11303,17879,14828,70099,11430,53379,22027,66660,226982,22589,15516,224902,14661,20823,16573,13209!GO:0005634;nucleus;0.000140296930652779;20658,56070,18949,17345,170791,12387,225055,20588,67241,11804,16599,24061,66921,83486,14211,81702,230594,19134,235132,109910,19359,17975,59026,17314,13207,21973,16169,13018,16971,72459,14030,192159,227292,68134,19712,59001,71514,56195,54343,70099,53379,66660,13714,11737,67382,231386,24136,228005,102103,66625,22589,20185,224902,19647,18616,100710,75956,15161,98415,20823,22385,233908,107503!GO:0008380;RNA splicing;0.000668694018073805;18949,71514,56195,19134,170791,75956,13207,53379,192159,66921!GO:0006950;response to stress;0.000754964432564087;12266,68134,71514,14828,14268,22027,18816,67241,16644,24061,22589,81702,15516,99571,17314,15525,19359,110135,20874!GO:0006397;mRNA processing;0.000872578527761319;18949,71514,56195,19134,170791,75956,13207,53379,67039,192159,66921!GO:0005515;protein binding;0.000872578527761319;19684,170791,16002,56791,12387,20971,19765,13207,16169,11806,13018,17999,14030,19712,59001,16337,69632,54343,14828,70099,14268,50706,53379,16828,11552,12317,19647,20658,56070,232341,19878,13171,11804,13688,24061,56307,14211,230594,235132,99571,17975,16971,192159,109624,12266,16451,19877,56195,20402,12330,11303,17879,22027,13690,11737,30924,208643,231887,22589,192196,20185,15516,56524,56445,22139,110135,15161,22385,107503,16573!GO:0043283;biopolymer metabolic process;0.000872578527761319;56070,18949,170791,56791,232341,12387,19878,225055,20588,67241,16599,24061,66921,54710,14211,81702,19134,235132,67615,109910,19359,59026,17314,13207,21973,11806,13018,72459,20874,17999,14030,192159,19877,19712,16337,16451,71514,56195,11303,54343,70099,53379,18453,66660,13714,243382,13690,231386,24136,208643,69219,22589,20185,224902,19647,75956,224836,20823,67039,74754,22385,233908,107503!GO:0016071;mRNA metabolic process;0.00221126137779433;18949,71514,56195,19134,170791,75956,13207,53379,67039,192159,66921!GO:0005681;spliceosome;0.00395269212901215;18949,56195,19134,13207,53379,75956,192159,66921!GO:0005577;fibrinogen complex;0.00517896580187711;110135,99571!GO:0006396;RNA processing;0.00616412839769402;18949,71514,56195,19134,170791,75956,13207,53379,20823,67039,192159,66921!GO:0006259;DNA metabolic process;0.00951284411529486;22589,20185,14211,81702,71514,70099,19359,17314,21973,22385,13018,20874,20588,67241,24061!GO:0051082;unfolded protein binding;0.00951284411529486;22027,15516,12317,12330,56445!GO:0005737;cytoplasm;0.0101531863423146;66972,19684,18949,81910,12387,52430,54710,19359,71207,16169,70356,67437,545389,20874,17999,97212,14030,22041,14828,69632,70099,11430,16828,102103,69219,68018,224902,12317,14661,110446,74754,233908,16784,238055,13209,94279,71911,17345,50884,232341,19878,13171,109754,14211,81702,230594,16427,14081,15525,16971,12321,109624,19877,15494,20402,12330,11303,17879,11657,27367,22027,18453,243382,13690,11737,208643,118451,15516,18616,15161,107503,16573!GO:0030301;cholesterol transport;0.0113042466776251;11806,238055,11303!GO:0015918;sterol transport;0.0128287828346694;11806,238055,11303!GO:0030261;chromosome condensation;0.0128287828346694;21973,14211,70099!GO:0004842;ubiquitin-protein ligase activity;0.0144604720545687;225055,19647,17999,67615,56791,59026!GO:0006281;DNA repair;0.0148437780127015;22589,81702,71514,20874,67241,24061,19359,17314!GO:0008639;small protein conjugating enzyme activity;0.0150777258332683;225055,19647,17999,67615,56791,59026!GO:0007492;endoderm development;0.0156991530975392;12387,81702,50884!GO:0033344;cholesterol efflux;0.0156991530975392;11806,11303!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0164783706334206;56070,18949,170791,12387,20588,67241,16599,24061,66921,14211,81702,230594,19134,235132,109910,19359,17314,13207,21973,13018,72459,20874,14030,192159,19712,56195,71514,54343,70099,53379,13714,66660,13690,231386,24136,208643,22589,20185,224902,75956,20823,233908,22385,67039,107503!GO:0044267;cellular protein metabolic process;0.0179013714409665;19684,50884,56791,232341,19878,225055,13688,56307,54710,19134,67615,99571,19359,59026,11806,20874,17999,12266,19877,16337,16451,11303,12330,27367,22027,18453,243382,13690,208643,228005,118451,226982,69219,15516,12317,19647,56445,110135,224836,74754!GO:0044446;intracellular organelle part;0.0194505841346077;94279,56070,18949,17345,71911,81910,12387,20588,109754,66921,233833,19134,17975,13207,21973,67437,545389,97212,192159,109624,19712,15494,56195,17879,54343,11430,53379,11737,118451,22589,14661,75956,110446,22385,107503,16784,16573!GO:0044422;organelle part;0.0205097943855523;94279,56070,18949,17345,71911,81910,12387,20588,109754,66921,233833,19134,17975,13207,21973,67437,545389,97212,192159,109624,19712,15494,56195,17879,54343,11430,53379,11737,118451,22589,14661,75956,110446,22385,107503,16784,16573!GO:0004857;enzyme inhibitor activity;0.0211725912555644;12266,232341,16426,20317,18816,30924,59083,16644!GO:0008135;translation factor activity, nucleic acid binding;0.0212390068569723;226982,213109,13690,13688,208643!GO:0003743;translation initiation factor activity;0.0212390068569723;226982,13690,13688,208643!GO:0019787;small conjugating protein ligase activity;0.0212390068569723;225055,19647,17999,67615,56791,59026!GO:0065007;biological regulation;0.0212390068569723;19684,56070,18949,170791,50884,16002,232341,12387,20588,16644,13688,11804,16599,83486,230594,235132,109910,99571,19765,17314,13207,21973,11806,13018,16971,72459,14030,22041,12266,109624,19877,19712,71514,69632,54343,98366,18453,66660,13714,13690,30924,231386,24136,208643,20185,224902,12317,100710,110135,15161,22385,233908,20317,107503!GO:0044260;cellular macromolecule metabolic process;0.0214516269381761;19684,50884,56791,232341,19878,225055,13688,56307,54710,19134,67615,99571,19359,59026,11806,20874,17999,12266,19877,16337,16451,11303,12330,27367,22027,18453,243382,13690,208643,228005,118451,226982,69219,15516,12317,19647,56445,110135,224836,74754!GO:0007059;chromosome segregation;0.0214516269381761;21973,14211,70099,24061!GO:0010467;gene expression;0.0223822014496294;56070,18949,170791,12387,20588,13688,16599,66921,230594,19134,235132,109910,13207,21973,13018,72459,14030,192159,19712,56195,71514,54343,53379,27367,13714,66660,13690,231386,24136,208643,118451,226982,20185,224902,75956,20823,233908,22385,67039,107503!GO:0030554;adenyl nucleotide binding;0.0237210511358166;19877,16451,16337,17879,11303,14828,11430,232341,22027,19878,67241,109754,24061,22589,81702,15516,19134,14661,15525,13207,21973,20874,16573,13209!GO:0030529;ribonucleoprotein complex;0.0237210511358166;18949,56195,19134,75956,13207,53379,27367,20823,51810,192159,118451,66921!GO:0006695;cholesterol biosynthetic process;0.0237210511358166;74754,11806,109754!GO:0006446;regulation of translational initiation;0.0237210511358166;13690,13688,208643!GO:0005783;endoplasmic reticulum;0.0245550935916827;68018,15494,12317,12330,14828,14081,81910,18453,22027,16169,74754,67437,238055,109754,12321!GO:0016881;acid-amino acid ligase activity;0.0298046974205204;225055,19647,17999,67615,56791,59026!GO:0006457;protein folding;0.0305199560433727;22027,15516,12317,12330,228005,56445!GO:0050794;regulation of cellular process;0.0320641076698631;19684,56070,18949,170791,16002,232341,12387,20588,13688,16599,83486,230594,235132,109910,19765,17314,13207,21973,11806,13018,16971,72459,14030,12266,19712,19877,71514,69632,54343,98366,66660,13714,13690,30924,231386,24136,208643,20185,224902,12317,100710,15161,22385,233908,107503!GO:0008286;insulin receptor signaling pathway;0.0320641076698631;16337,20402,13688!GO:0006974;response to DNA damage stimulus;0.0321671119112917;22589,81702,71514,20874,67241,24061,19359,17314!GO:0019538;protein metabolic process;0.0321671119112917;19684,50884,56791,232341,19878,225055,13688,56307,54710,19134,67615,99571,19359,59026,11806,20874,17999,12266,19877,16337,16451,11303,12330,27367,22027,18453,243382,13690,208643,228005,118451,226982,69219,15516,12317,19647,56445,110135,224836,74754!GO:0044428;nuclear part;0.0321671119112917;56070,19712,18949,56195,17345,54343,12387,53379,11737,20588,66921,22589,19134,17975,13207,75956,21973,107503,192159!GO:0016070;RNA metabolic process;0.032655880461774;56070,18949,170791,12387,20588,16599,66921,19134,235132,109910,13207,21973,13018,72459,14030,192159,19712,56195,71514,54343,53379,13714,66660,13690,231386,208643,24136,20185,224902,75956,233908,22385,67039,20823,107503!GO:0045176;apical protein localization;0.032655880461774;19684,50884!GO:0005694;chromosome;0.0385603215515507;22589,14211,19134,17345,70099,21973,22385,20588,67241,24061!GO:0000041;transition metal ion transport;0.0391584339074153;94279,67547,12870,22041!GO:0004866;endopeptidase inhibitor activity;0.0427208643262824;12266,16426,18816,20317,59083,16644!GO:0016126;sterol biosynthetic process;0.0435931261466643;74754,11806,109754!GO:0030414;protease inhibitor activity;0.0457060188718896;12266,16426,18816,20317,59083,16644!GO:0009719;response to endogenous stimulus;0.0457060188718896;22589,81702,71514,20874,67241,24061,19359,17314!GO:0000267;cell fraction;0.0471321697442764;109624,12317,20402,14081,232341,12387,18453,238055,16784,16971,20493,109754!GO:0005524;ATP binding;0.0487694526171755;19877,16451,16337,17879,11303,14828,232341,22027,19878,67241,24061,22589,81702,15516,19134,14661,15525,13207,21973,20874,16573,13209!GO:0008105;asymmetric protein localization;0.0490638162174911;19684,50884!GO:0046914;transition metal ion binding;0.0491273373680955;94279,19878,225055,16599,56307,83486,230594,235132,109910,17314,71207,13018,14030,22041,213109,19712,19877,67547,20402,11657,98366,243382,24136,192196,69219,22589,12317,19647,12870,18616,56445,224836,233908,22385!GO:0008203;cholesterol metabolic process;0.04995098518516;74754,11806,11303,109754! | |||
}} | |||
Revision as of 10:59, 11 October 2012
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0044424 | intracellular part | 3.62326388310158e-07 |
| GO:0003723 | RNA binding | 7.22117747526009e-07 |
| GO:0005622 | intracellular | 7.22117747526009e-07 |
| GO:0044237 | cellular metabolic process | 2.87852769636116e-06 |
| GO:0043231 | intracellular membrane-bound organelle | 2.96137180970704e-06 |
| GO:0043227 | membrane-bound organelle | 2.96137180970704e-06 |
| GO:0044238 | primary metabolic process | 3.33100339929591e-06 |
| GO:0043229 | intracellular organelle | 3.97165197277932e-06 |
| GO:0043226 | organelle | 3.97165197277932e-06 |
| GO:0003676 | nucleic acid binding | 5.40959403463194e-06 |
| GO:0043170 | macromolecule metabolic process | 1.22366369133945e-05 |
| GO:0000166 | nucleotide binding | 3.83375562391192e-05 |
| GO:0005634 | nucleus | 0.000140296930652779 |
| GO:0008380 | RNA splicing | 0.000668694018073805 |
| GO:0006950 | response to stress | 0.000754964432564087 |
| GO:0006397 | mRNA processing | 0.000872578527761319 |
| GO:0005515 | protein binding | 0.000872578527761319 |
| GO:0043283 | biopolymer metabolic process | 0.000872578527761319 |
| GO:0016071 | mRNA metabolic process | 0.00221126137779433 |
| GO:0005681 | spliceosome | 0.00395269212901215 |
| GO:0005577 | fibrinogen complex | 0.00517896580187711 |
| GO:0006396 | RNA processing | 0.00616412839769402 |
| GO:0006259 | DNA metabolic process | 0.00951284411529486 |
| GO:0051082 | unfolded protein binding | 0.00951284411529486 |
| GO:0005737 | cytoplasm | 0.0101531863423146 |
| GO:0030301 | cholesterol transport | 0.0113042466776251 |
| GO:0015918 | sterol transport | 0.0128287828346694 |
| GO:0030261 | chromosome condensation | 0.0128287828346694 |
| GO:0004842 | ubiquitin-protein ligase activity | 0.0144604720545687 |
| GO:0006281 | DNA repair | 0.0148437780127015 |
| GO:0008639 | small protein conjugating enzyme activity | 0.0150777258332683 |
| GO:0007492 | endoderm development | 0.0156991530975392 |
| GO:0033344 | cholesterol efflux | 0.0156991530975392 |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.0164783706334206 |
| GO:0044267 | cellular protein metabolic process | 0.0179013714409665 |
| GO:0044446 | intracellular organelle part | 0.0194505841346077 |
| GO:0044422 | organelle part | 0.0205097943855523 |
| GO:0004857 | enzyme inhibitor activity | 0.0211725912555644 |
| GO:0008135 | translation factor activity, nucleic acid binding | 0.0212390068569723 |
| GO:0003743 | translation initiation factor activity | 0.0212390068569723 |
| GO:0019787 | small conjugating protein ligase activity | 0.0212390068569723 |
| GO:0065007 | biological regulation | 0.0212390068569723 |
| GO:0044260 | cellular macromolecule metabolic process | 0.0214516269381761 |
| GO:0007059 | chromosome segregation | 0.0214516269381761 |
| GO:0010467 | gene expression | 0.0223822014496294 |
| GO:0030554 | adenyl nucleotide binding | 0.0237210511358166 |
| GO:0030529 | ribonucleoprotein complex | 0.0237210511358166 |
| GO:0006695 | cholesterol biosynthetic process | 0.0237210511358166 |
| GO:0006446 | regulation of translational initiation | 0.0237210511358166 |
| GO:0005783 | endoplasmic reticulum | 0.0245550935916827 |
| GO:0016881 | acid-amino acid ligase activity | 0.0298046974205204 |
| GO:0006457 | protein folding | 0.0305199560433727 |
| GO:0050794 | regulation of cellular process | 0.0320641076698631 |
| GO:0008286 | insulin receptor signaling pathway | 0.0320641076698631 |
| GO:0006974 | response to DNA damage stimulus | 0.0321671119112917 |
| GO:0019538 | protein metabolic process | 0.0321671119112917 |
| GO:0044428 | nuclear part | 0.0321671119112917 |
| GO:0016070 | RNA metabolic process | 0.032655880461774 |
| GO:0045176 | apical protein localization | 0.032655880461774 |
| GO:0005694 | chromosome | 0.0385603215515507 |
| GO:0000041 | transition metal ion transport | 0.0391584339074153 |
| GO:0004866 | endopeptidase inhibitor activity | 0.0427208643262824 |
| GO:0016126 | sterol biosynthetic process | 0.0435931261466643 |
| GO:0030414 | protease inhibitor activity | 0.0457060188718896 |
| GO:0009719 | response to endogenous stimulus | 0.0457060188718896 |
| GO:0000267 | cell fraction | 0.0471321697442764 |
| GO:0005524 | ATP binding | 0.0487694526171755 |
| GO:0008105 | asymmetric protein localization | 0.0490638162174911 |
| GO:0046914 | transition metal ion binding | 0.0491273373680955 |
| GO:0008203 | cholesterol metabolic process | 0.04995098518516 |
Relative expression of the co-expression cluster over median <br>Analyst:
"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
