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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0032542;sulfiredoxin activity;0.0195380257596936;76650!GO:0004105;choline-phosphate cytidylyltransferase activity;0.0195380257596936;13026!GO:0042587;glycogen granule;0.0195380257596936;13026!GO:0006656;phosphatidylcholine biosynthetic process;0.0329451371783099;13026!GO:0008440;inositol trisphosphate 3-kinase activity;0.0329451371783099;233011!GO:0001833;inner cell mass cell proliferation;0.0329451371783099;66711!GO:0051766;inositol trisphosphate kinase activity;0.0329451371783099;233011!GO:0046470;phosphatidylcholine metabolic process;0.0329451371783099;13026!GO:0001832;blastocyst growth;0.0422813918642166;66711!}}
{{MCL_coexpression_mm9
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}}

Revision as of 11:15, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:74684870..74684903,+p@chr10:74684870..74684903
+
Mm9::chr11:98445560..98445595,-p@chr11:98445560..98445595
-
Mm9::chr16:32430693..32430704,+p6@Pcyt1a
Mm9::chr2:151931458..151931475,+p1@Srxn1
Mm9::chr3:138189439..138189485,+p2@Mir1956
Mm9::chr5:130731395..130731407,-p2@Sbds
Mm9::chr7:28013521..28013536,-p2@Itpkc
Mm9::chr8:11221377..11221392,-p@chr8:11221377..11221392
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0032542sulfiredoxin activity0.0195380257596936
GO:0004105choline-phosphate cytidylyltransferase activity0.0195380257596936
GO:0042587glycogen granule0.0195380257596936
GO:0006656phosphatidylcholine biosynthetic process0.0329451371783099
GO:0008440inositol trisphosphate 3-kinase activity0.0329451371783099
GO:0001833inner cell mass cell proliferation0.0329451371783099
GO:0051766inositol trisphosphate kinase activity0.0329451371783099
GO:0046470phosphatidylcholine metabolic process0.0329451371783099
GO:0001832blastocyst growth0.0422813918642166



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}