MCL coexpression mm9:15: Difference between revisions
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{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9 | ||
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.777908442830166,0.967284418110765,1.04694416393534,0,0,0.153628809860867,0,0,0,0,0,0,0,0,0,0,0,0.213525904512698,0.208189948540879,0,0,0,0,0.070241023652205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152695919012311,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0.0907114467972166,0.115432590314795,0.0901223798974778,0.06097065795378,0.0482820047261801,0,0,0,0.65690680954157,0.216711371335999,0.58781641058642,0.642872582298338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.497041680076248,0,0,0,0,0,0.0609639314262262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0817525223528981,0.0915002620172692,0,0,0,0,0,0,0,0,0,0.0125667025881771,0,0,0,0,0,0,0,0,0.0889032470130945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.046982063026719,0,0,0,0,0,0,0,0,0,0.647907468123216,0.709925902954746,0.805955351541229,0.855925496797703,0.861570619686221,0.819660306869143,0.675782903287007,0.538171483264411,0.5046735274852,0.386977062110387,0.219404825584878,0,0,0,0,0,0,0,0,0,0,0,0,0.0478096730198974,0,0,0.0659019793256198,0,0.0103400628688989,0,0,0,0,0,0,0,0.08616573300112,0,0,0,0,0,0,0,0,0,0,0,0.0132438123460195,0.0117226095115479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7991335074136,0.150072612586664,0.485318845813209,1.03322907411037,0.944066486794649,0.954591544910926,0,0,0,0,0,0.0383826465145086,0.0445418537893845,0,0,0.054943952156948,0.034489466458534,0,0,0,0,0,0,0,0,0,0.0165555951480399,0.0253669311276321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145825435924841,0.191236439591995,0.345478337900882,0.211878289366281,0.135986724295729,0.159715578577694,0.149856261570464,0.14455623420353,0.17765030293269,0.178101321237085,0.1719066208034,0.166787449282399,0.160821365870842,0.164199264373545,0.169172763866184,0.159485352286366,0.141706336142815,0.14986111676545,0.158843797677303,0.145910317999683,0.185379913858661,0.169342968499384,0.157166310227119,0.167478880586199,0.171740826449386,0.159089444845984,0.18359421108913,0.153335003525643,0.193442483447008,0.165684290612666,0.144268359582519,0.148982201447044,0.165781451382873,0.198305064902181,0,0.091291089277545,0.155257708002722,0,0.220572027003917,0.229324306108569 | |||
|gostat_on_MCL_coexpression=GO:0006783;heme biosynthetic process;6.14720116011521e-07;15288,14151,22276,11656,22275,12892!GO:0006779;porphyrin biosynthetic process;7.48133565506389e-07;15288,14151,22276,11656,22275,12892!GO:0033014;tetrapyrrole biosynthetic process;7.48133565506389e-07;15288,14151,22276,11656,22275,12892!GO:0006464;protein modification process;1.03724655686997e-06;20454,14755,84585,15257,226419,226418,56791,224703,19358,12531,231637,54613,67338,69754,209462,240756,18708,230979,12234,320253,237898,232811,19245,65247,13631,53892,272589,13828,98766,71779,56371,217342,20443,50754,12704,102414,15467!GO:0042168;heme metabolic process;2.04156129412638e-06;15288,14151,22276,11656,22275,12892!GO:0043412;biopolymer modification;2.90765332252246e-06;20454,14755,84585,15257,226419,226418,56791,224703,19358,12531,231637,54613,67338,69754,209462,240756,18708,230979,12234,320253,237898,232811,19245,65247,13631,53892,272589,13828,98766,71779,56371,217342,20443,50754,12704,102414,15467!GO:0006778;porphyrin metabolic process;2.90765332252246e-06;15288,14151,22276,11656,22275,12892!GO:0033013;tetrapyrrole metabolic process;2.90765332252246e-06;15288,14151,22276,11656,22275,12892!GO:0030218;erythrocyte differentiation;1.22047272485365e-05;16909,11656,226419,19645,13828,21349,16596!GO:0046148;pigment biosynthetic process;2.6937302465333e-05;15288,14151,22276,11656,22275,12892!GO:0019538;protein metabolic process;4.85275264369807e-05;20454,14755,84585,15257,226419,226418,56791,224703,20739,19358,12531,231637,54613,67338,56307,69754,13034,209462,240756,18708,230979,23925,12234,20741,320253,237898,15451,232811,100900,12757,19245,65247,13829,13631,53892,272589,13828,65246,98766,11656,71779,56371,217342,13033,20443,73218,11423,50754,11764,15467,102414,12704!GO:0042440;pigment metabolic process;6.69980106637326e-05;15288,14151,22276,11656,22275,12892!GO:0044267;cellular protein metabolic process;6.69980106637326e-05;20454,14755,84585,15257,226419,226418,56791,224703,20739,19358,12531,231637,54613,67338,56307,69754,13034,209462,240756,18708,230979,23925,12234,20741,320253,237898,15451,232811,100900,19245,65247,13829,13631,53892,272589,13828,65246,98766,11656,71779,56371,217342,13033,20443,73218,50754,11423,15467,12704,102414!GO:0043687;post-translational protein modification;0.000107051834542066;84585,13631,15257,226419,226418,53892,56791,224703,12531,231637,13828,67338,98766,69754,209462,240756,71779,18708,56371,217342,230979,320253,237898,50754,232811,19245,15467,102414,12704,65247!GO:0044260;cellular macromolecule metabolic process;0.000107051834542066;20454,14755,84585,15257,226419,226418,56791,224703,20739,19358,12531,231637,54613,67338,56307,69754,13034,209462,240756,18708,230979,23925,12234,20741,320253,237898,15451,232811,100900,19245,65247,13829,13631,53892,272589,13828,65246,98766,11656,71779,56371,217342,13033,20443,73218,50754,11423,15467,12704,102414!GO:0044237;cellular metabolic process;0.000126985593279208;20454,14755,226419,19645,104394,56791,66350,20739,211586,54613,16599,27223,107569,69754,240756,21672,230979,20617,16596,23925,12234,320253,15451,232811,238871,13829,76051,53892,21349,17355,209558,66403,13828,12349,18022,22275,74080,13033,22276,20443,11423,102414,84585,228608,15257,226418,12892,319190,224703,22221,242705,19358,12531,231637,109754,20679,67338,56307,13034,14151,209462,18708,98999,20741,237898,208449,233016,18642,100900,11717,19245,65247,433256,13631,22427,80905,433375,272589,15288,65246,98766,27388,11656,71779,266645,56371,217342,15275,12417,73218,50754,15467,12704!GO:0030099;myeloid cell differentiation;0.000342648519484704;11656,18708,226419,19645,21349,16596,16909,13828!GO:0019748;secondary metabolic process;0.000342648519484704;15288,14151,22276,11656,22275,12892!GO:0006512;ubiquitin cycle;0.00082288921139161;98766,84585,69754,209462,71779,240756,56371,217342,226418,56791,224703,320253,237898,50754,67338,65247!GO:0005622;intracellular;0.00255817147097704;20454,27028,93966,17330,384309,226419,19645,104394,58185,216781,66350,20739,211586,54613,16599,27223,107569,21672,20617,16596,12234,320253,217356,232811,238871,228769,13829,14020,11433,70827,21349,11733,17355,80890,21894,13828,66403,57444,12349,226757,18022,23970,22275,432442,74080,269587,12177,13033,214290,22276,20443,217593,102414,84585,228608,15257,17345,226418,12892,319190,224703,22221,242705,19358,11980,12531,231637,109754,20679,67338,432572,13034,14151,209462,15129,18708,68646,98999,20741,208449,56199,233016,18642,12757,100900,19245,67628,433256,76425,22427,67712,80905,433375,272589,16909,16443,65246,208638,98766,209630,27388,11979,11656,71779,109689,15275,22042,14580,22183,19824,12417,71435,50754,11764,12704,15467!GO:0046483;heterocycle metabolic process;0.00307409917612956;15288,14151,22276,11656,22275,12892!GO:0051188;cofactor biosynthetic process;0.00307409917612956;15288,14151,22276,11656,22275,74080,12892!GO:0030097;hemopoiesis;0.00307409917612956;15129,11656,18708,226419,19645,21349,16596,16909,20739,13828!GO:0004998;transferrin receptor activity;0.00492449298195315;22042!GO:0030173;integral to Golgi membrane;0.00505719947569531;20454,20443,208449,54613!GO:0031228;intrinsic to Golgi membrane;0.00505719947569531;20454,20443,208449,54613!GO:0048534;hemopoietic or lymphoid organ development;0.006319060321647;15129,11656,18708,226419,19645,21349,16596,16909,20739,13828!GO:0044238;primary metabolic process;0.00712872913789426;20454,14755,226419,19645,104394,56791,66350,20739,211586,54613,16599,27223,107569,69754,240756,230979,20617,16596,23925,12234,320253,15451,232811,238871,13829,76051,53892,21349,17355,209558,66403,13828,18022,74080,13033,20443,11423,102414,84585,228608,15257,226418,319190,224703,22221,242705,19358,12531,231637,109754,67338,20679,56307,13034,209462,18708,98999,20741,237898,18642,208449,12757,100900,11717,19245,65247,433256,13631,22427,80905,433375,272589,65246,98766,27388,11656,71779,56371,217342,15275,12417,73218,50754,11764,15467,12704!GO:0005737;cytoplasm;0.00911146064391243;20454,27028,17330,104394,58185,66350,20739,54613,107569,21672,20617,12234,320253,217356,238871,228769,13829,11433,70827,11733,80890,21894,13828,12349,226757,23970,22275,269587,12177,13033,22276,20443,217593,102414,84585,228608,15257,17345,12892,224703,11980,231637,109754,67338,13034,14151,209462,15129,18708,68646,20741,233016,56199,18642,208449,12757,100900,19245,433256,67712,272589,65246,208638,98766,209630,11979,11656,71779,15275,22042,14580,19824,71435,50754,11764,15467,12704!GO:0002520;immune system development;0.00986555974178519;15129,11656,18708,226419,19645,21349,16596,16909,20739,13828!GO:0044431;Golgi apparatus part;0.0149412997720628;20454,11979,20443,208449,12757,11764,54613!GO:0016874;ligase activity;0.0178826778015195;433256,84585,209462,71779,217342,56791,235439,12234,224703,320253,67338!GO:0007016;cytoskeletal anchoring;0.0191943601171486;21894,14934!GO:0042541;hemoglobin biosynthetic process;0.0191943601171486;11656,15467!GO:0005381;iron ion transmembrane transporter activity;0.0191943601171486;67712,22042!GO:0000139;Golgi membrane;0.0212286450134798;20454,20443,208449,12757,54613!GO:0051016;barbed-end actin filament capping;0.0215113521451891;20741,20739,13829!GO:0004190;aspartic-type endopeptidase activity;0.0215113521451891;13034,13033,73218!GO:0044424;intracellular part;0.0215113521451891;20454,27028,93966,17330,226419,19645,104394,58185,66350,20739,211586,54613,16599,27223,107569,21672,20617,16596,12234,320253,217356,232811,238871,228769,13829,14020,11433,70827,21349,11733,17355,80890,21894,13828,66403,57444,12349,226757,18022,23970,22275,432442,74080,269587,12177,13033,22276,20443,217593,102414,84585,228608,15257,17345,12892,319190,224703,22221,242705,19358,11980,231637,109754,20679,67338,432572,13034,14151,209462,15129,18708,68646,98999,20741,208449,233016,56199,18642,12757,100900,19245,67628,433256,76425,22427,67712,80905,433375,272589,16909,65246,208638,98766,209630,11979,11656,71779,15275,22042,14580,22183,19824,12417,71435,50754,11764,15467,12704!GO:0051325;interphase;0.0215113521451891;19645,53892,104394,67628!GO:0051329;interphase of mitotic cell cycle;0.0215113521451891;19645,53892,104394,67628!GO:0043170;macromolecule metabolic process;0.0225409448610969;20454,14755,226419,19645,104394,56791,20739,211586,54613,16599,27223,69754,240756,230979,16596,23925,12234,320253,15451,232811,13829,76051,53892,21349,17355,66403,13828,18022,13033,20443,11423,102414,84585,15257,226418,319190,224703,22221,242705,19358,12531,231637,67338,20679,56307,13034,209462,18708,98999,20741,237898,18642,12757,100900,19245,65247,13631,22427,80905,433375,272589,65246,98766,11656,71779,56371,217342,15275,12417,73218,50754,11764,15467,12704!GO:0030835;negative regulation of actin filament depolymerization;0.02279619385475;20741,20739,13829!GO:0051693;actin filament capping;0.02279619385475;20741,20739,13829!GO:0020027;hemoglobin metabolic process;0.0250522658748396;11656,15467!GO:0008373;sialyltransferase activity;0.0256122969500218;20454,20443,54613!GO:0030834;regulation of actin filament depolymerization;0.0276407269696161;20741,20739,13829!GO:0030042;actin filament depolymerization;0.0276407269696161;20741,20739,13829!GO:0043249;erythrocyte maturation;0.0334626367152821;13828,16596!GO:0031301;integral to organelle membrane;0.0365350238383254;20454,20443,208449,54613!GO:0010324;membrane invagination;0.0365350238383254;224703,320253,23970,11423,11764,16443,22042!GO:0006897;endocytosis;0.0365350238383254;224703,320253,23970,11423,11764,16443,22042!GO:0006879;cellular iron ion homeostasis;0.0365350238383254;11656,22042!GO:0046915;transition metal ion transmembrane transporter activity;0.0365350238383254;67712,11979,22042!GO:0055072;iron ion homeostasis;0.0365350238383254;11656,22042!GO:0005515;protein binding;0.0367014934270035;384309,19645,104394,56791,216781,54199,20739,27223,240756,230979,20617,12234,320253,17444,13829,70827,21349,11733,80890,21894,74760,229658,66403,18022,23970,432442,269587,11423,13852,84585,15257,13857,224703,242705,14934,231637,67338,20679,56307,13034,18708,54484,20741,12757,100900,67628,13631,22427,433375,272589,16909,78369,16443,65246,84036,11656,71779,20533,109689,14580,19824,12417,71435,50754,11764,15467,12704!GO:0031300;intrinsic to organelle membrane;0.0464084727675769;20454,20443,208449,54613!GO:0016788;hydrolase activity, acting on ester bonds;0.0487894589467933;107569,22427,17330,11433,53892,66350,209558,237898,12531,11423,231637,19245,238871,57444!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0499058892076902;269587,21894!GO:0004194;pepsin A activity;0.0499058892076902;13034,13033!GO:0042578;phosphoric ester hydrolase activity;0.0499058892076902;107569,17330,11433,53892,209558,12531,231637,238871,19245! | |gostat_on_MCL_coexpression=GO:0006783;heme biosynthetic process;6.14720116011521e-07;15288,14151,22276,11656,22275,12892!GO:0006779;porphyrin biosynthetic process;7.48133565506389e-07;15288,14151,22276,11656,22275,12892!GO:0033014;tetrapyrrole biosynthetic process;7.48133565506389e-07;15288,14151,22276,11656,22275,12892!GO:0006464;protein modification process;1.03724655686997e-06;20454,14755,84585,15257,226419,226418,56791,224703,19358,12531,231637,54613,67338,69754,209462,240756,18708,230979,12234,320253,237898,232811,19245,65247,13631,53892,272589,13828,98766,71779,56371,217342,20443,50754,12704,102414,15467!GO:0042168;heme metabolic process;2.04156129412638e-06;15288,14151,22276,11656,22275,12892!GO:0043412;biopolymer modification;2.90765332252246e-06;20454,14755,84585,15257,226419,226418,56791,224703,19358,12531,231637,54613,67338,69754,209462,240756,18708,230979,12234,320253,237898,232811,19245,65247,13631,53892,272589,13828,98766,71779,56371,217342,20443,50754,12704,102414,15467!GO:0006778;porphyrin metabolic process;2.90765332252246e-06;15288,14151,22276,11656,22275,12892!GO:0033013;tetrapyrrole metabolic process;2.90765332252246e-06;15288,14151,22276,11656,22275,12892!GO:0030218;erythrocyte differentiation;1.22047272485365e-05;16909,11656,226419,19645,13828,21349,16596!GO:0046148;pigment biosynthetic process;2.6937302465333e-05;15288,14151,22276,11656,22275,12892!GO:0019538;protein metabolic process;4.85275264369807e-05;20454,14755,84585,15257,226419,226418,56791,224703,20739,19358,12531,231637,54613,67338,56307,69754,13034,209462,240756,18708,230979,23925,12234,20741,320253,237898,15451,232811,100900,12757,19245,65247,13829,13631,53892,272589,13828,65246,98766,11656,71779,56371,217342,13033,20443,73218,11423,50754,11764,15467,102414,12704!GO:0042440;pigment metabolic process;6.69980106637326e-05;15288,14151,22276,11656,22275,12892!GO:0044267;cellular protein metabolic process;6.69980106637326e-05;20454,14755,84585,15257,226419,226418,56791,224703,20739,19358,12531,231637,54613,67338,56307,69754,13034,209462,240756,18708,230979,23925,12234,20741,320253,237898,15451,232811,100900,19245,65247,13829,13631,53892,272589,13828,65246,98766,11656,71779,56371,217342,13033,20443,73218,50754,11423,15467,12704,102414!GO:0043687;post-translational protein modification;0.000107051834542066;84585,13631,15257,226419,226418,53892,56791,224703,12531,231637,13828,67338,98766,69754,209462,240756,71779,18708,56371,217342,230979,320253,237898,50754,232811,19245,15467,102414,12704,65247!GO:0044260;cellular macromolecule metabolic process;0.000107051834542066;20454,14755,84585,15257,226419,226418,56791,224703,20739,19358,12531,231637,54613,67338,56307,69754,13034,209462,240756,18708,230979,23925,12234,20741,320253,237898,15451,232811,100900,19245,65247,13829,13631,53892,272589,13828,65246,98766,11656,71779,56371,217342,13033,20443,73218,50754,11423,15467,12704,102414!GO:0044237;cellular metabolic process;0.000126985593279208;20454,14755,226419,19645,104394,56791,66350,20739,211586,54613,16599,27223,107569,69754,240756,21672,230979,20617,16596,23925,12234,320253,15451,232811,238871,13829,76051,53892,21349,17355,209558,66403,13828,12349,18022,22275,74080,13033,22276,20443,11423,102414,84585,228608,15257,226418,12892,319190,224703,22221,242705,19358,12531,231637,109754,20679,67338,56307,13034,14151,209462,18708,98999,20741,237898,208449,233016,18642,100900,11717,19245,65247,433256,13631,22427,80905,433375,272589,15288,65246,98766,27388,11656,71779,266645,56371,217342,15275,12417,73218,50754,15467,12704!GO:0030099;myeloid cell differentiation;0.000342648519484704;11656,18708,226419,19645,21349,16596,16909,13828!GO:0019748;secondary metabolic process;0.000342648519484704;15288,14151,22276,11656,22275,12892!GO:0006512;ubiquitin cycle;0.00082288921139161;98766,84585,69754,209462,71779,240756,56371,217342,226418,56791,224703,320253,237898,50754,67338,65247!GO:0005622;intracellular;0.00255817147097704;20454,27028,93966,17330,384309,226419,19645,104394,58185,216781,66350,20739,211586,54613,16599,27223,107569,21672,20617,16596,12234,320253,217356,232811,238871,228769,13829,14020,11433,70827,21349,11733,17355,80890,21894,13828,66403,57444,12349,226757,18022,23970,22275,432442,74080,269587,12177,13033,214290,22276,20443,217593,102414,84585,228608,15257,17345,226418,12892,319190,224703,22221,242705,19358,11980,12531,231637,109754,20679,67338,432572,13034,14151,209462,15129,18708,68646,98999,20741,208449,56199,233016,18642,12757,100900,19245,67628,433256,76425,22427,67712,80905,433375,272589,16909,16443,65246,208638,98766,209630,27388,11979,11656,71779,109689,15275,22042,14580,22183,19824,12417,71435,50754,11764,12704,15467!GO:0046483;heterocycle metabolic process;0.00307409917612956;15288,14151,22276,11656,22275,12892!GO:0051188;cofactor biosynthetic process;0.00307409917612956;15288,14151,22276,11656,22275,74080,12892!GO:0030097;hemopoiesis;0.00307409917612956;15129,11656,18708,226419,19645,21349,16596,16909,20739,13828!GO:0004998;transferrin receptor activity;0.00492449298195315;22042!GO:0030173;integral to Golgi membrane;0.00505719947569531;20454,20443,208449,54613!GO:0031228;intrinsic to Golgi membrane;0.00505719947569531;20454,20443,208449,54613!GO:0048534;hemopoietic or lymphoid organ development;0.006319060321647;15129,11656,18708,226419,19645,21349,16596,16909,20739,13828!GO:0044238;primary metabolic process;0.00712872913789426;20454,14755,226419,19645,104394,56791,66350,20739,211586,54613,16599,27223,107569,69754,240756,230979,20617,16596,23925,12234,320253,15451,232811,238871,13829,76051,53892,21349,17355,209558,66403,13828,18022,74080,13033,20443,11423,102414,84585,228608,15257,226418,319190,224703,22221,242705,19358,12531,231637,109754,67338,20679,56307,13034,209462,18708,98999,20741,237898,18642,208449,12757,100900,11717,19245,65247,433256,13631,22427,80905,433375,272589,65246,98766,27388,11656,71779,56371,217342,15275,12417,73218,50754,11764,15467,12704!GO:0005737;cytoplasm;0.00911146064391243;20454,27028,17330,104394,58185,66350,20739,54613,107569,21672,20617,12234,320253,217356,238871,228769,13829,11433,70827,11733,80890,21894,13828,12349,226757,23970,22275,269587,12177,13033,22276,20443,217593,102414,84585,228608,15257,17345,12892,224703,11980,231637,109754,67338,13034,14151,209462,15129,18708,68646,20741,233016,56199,18642,208449,12757,100900,19245,433256,67712,272589,65246,208638,98766,209630,11979,11656,71779,15275,22042,14580,19824,71435,50754,11764,15467,12704!GO:0002520;immune system development;0.00986555974178519;15129,11656,18708,226419,19645,21349,16596,16909,20739,13828!GO:0044431;Golgi apparatus part;0.0149412997720628;20454,11979,20443,208449,12757,11764,54613!GO:0016874;ligase activity;0.0178826778015195;433256,84585,209462,71779,217342,56791,235439,12234,224703,320253,67338!GO:0007016;cytoskeletal anchoring;0.0191943601171486;21894,14934!GO:0042541;hemoglobin biosynthetic process;0.0191943601171486;11656,15467!GO:0005381;iron ion transmembrane transporter activity;0.0191943601171486;67712,22042!GO:0000139;Golgi membrane;0.0212286450134798;20454,20443,208449,12757,54613!GO:0051016;barbed-end actin filament capping;0.0215113521451891;20741,20739,13829!GO:0004190;aspartic-type endopeptidase activity;0.0215113521451891;13034,13033,73218!GO:0044424;intracellular part;0.0215113521451891;20454,27028,93966,17330,226419,19645,104394,58185,66350,20739,211586,54613,16599,27223,107569,21672,20617,16596,12234,320253,217356,232811,238871,228769,13829,14020,11433,70827,21349,11733,17355,80890,21894,13828,66403,57444,12349,226757,18022,23970,22275,432442,74080,269587,12177,13033,22276,20443,217593,102414,84585,228608,15257,17345,12892,319190,224703,22221,242705,19358,11980,231637,109754,20679,67338,432572,13034,14151,209462,15129,18708,68646,98999,20741,208449,233016,56199,18642,12757,100900,19245,67628,433256,76425,22427,67712,80905,433375,272589,16909,65246,208638,98766,209630,11979,11656,71779,15275,22042,14580,22183,19824,12417,71435,50754,11764,15467,12704!GO:0051325;interphase;0.0215113521451891;19645,53892,104394,67628!GO:0051329;interphase of mitotic cell cycle;0.0215113521451891;19645,53892,104394,67628!GO:0043170;macromolecule metabolic process;0.0225409448610969;20454,14755,226419,19645,104394,56791,20739,211586,54613,16599,27223,69754,240756,230979,16596,23925,12234,320253,15451,232811,13829,76051,53892,21349,17355,66403,13828,18022,13033,20443,11423,102414,84585,15257,226418,319190,224703,22221,242705,19358,12531,231637,67338,20679,56307,13034,209462,18708,98999,20741,237898,18642,12757,100900,19245,65247,13631,22427,80905,433375,272589,65246,98766,11656,71779,56371,217342,15275,12417,73218,50754,11764,15467,12704!GO:0030835;negative regulation of actin filament depolymerization;0.02279619385475;20741,20739,13829!GO:0051693;actin filament capping;0.02279619385475;20741,20739,13829!GO:0020027;hemoglobin metabolic process;0.0250522658748396;11656,15467!GO:0008373;sialyltransferase activity;0.0256122969500218;20454,20443,54613!GO:0030834;regulation of actin filament depolymerization;0.0276407269696161;20741,20739,13829!GO:0030042;actin filament depolymerization;0.0276407269696161;20741,20739,13829!GO:0043249;erythrocyte maturation;0.0334626367152821;13828,16596!GO:0031301;integral to organelle membrane;0.0365350238383254;20454,20443,208449,54613!GO:0010324;membrane invagination;0.0365350238383254;224703,320253,23970,11423,11764,16443,22042!GO:0006897;endocytosis;0.0365350238383254;224703,320253,23970,11423,11764,16443,22042!GO:0006879;cellular iron ion homeostasis;0.0365350238383254;11656,22042!GO:0046915;transition metal ion transmembrane transporter activity;0.0365350238383254;67712,11979,22042!GO:0055072;iron ion homeostasis;0.0365350238383254;11656,22042!GO:0005515;protein binding;0.0367014934270035;384309,19645,104394,56791,216781,54199,20739,27223,240756,230979,20617,12234,320253,17444,13829,70827,21349,11733,80890,21894,74760,229658,66403,18022,23970,432442,269587,11423,13852,84585,15257,13857,224703,242705,14934,231637,67338,20679,56307,13034,18708,54484,20741,12757,100900,67628,13631,22427,433375,272589,16909,78369,16443,65246,84036,11656,71779,20533,109689,14580,19824,12417,71435,50754,11764,15467,12704!GO:0031300;intrinsic to organelle membrane;0.0464084727675769;20454,20443,208449,54613!GO:0016788;hydrolase activity, acting on ester bonds;0.0487894589467933;107569,22427,17330,11433,53892,66350,209558,237898,12531,11423,231637,19245,238871,57444!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0499058892076902;269587,21894!GO:0004194;pepsin A activity;0.0499058892076902;13034,13033!GO:0042578;phosphoric ester hydrolase activity;0.0499058892076902;107569,17330,11433,53892,209558,12531,231637,238871,19245! | ||
}} | }} | ||
Revision as of 12:35, 11 October 2012
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0006783 | heme biosynthetic process | 6.14720116011521e-07 |
| GO:0006779 | porphyrin biosynthetic process | 7.48133565506389e-07 |
| GO:0033014 | tetrapyrrole biosynthetic process | 7.48133565506389e-07 |
| GO:0006464 | protein modification process | 1.03724655686997e-06 |
| GO:0042168 | heme metabolic process | 2.04156129412638e-06 |
| GO:0043412 | biopolymer modification | 2.90765332252246e-06 |
| GO:0006778 | porphyrin metabolic process | 2.90765332252246e-06 |
| GO:0033013 | tetrapyrrole metabolic process | 2.90765332252246e-06 |
| GO:0030218 | erythrocyte differentiation | 1.22047272485365e-05 |
| GO:0046148 | pigment biosynthetic process | 2.6937302465333e-05 |
| GO:0019538 | protein metabolic process | 4.85275264369807e-05 |
| GO:0042440 | pigment metabolic process | 6.69980106637326e-05 |
| GO:0044267 | cellular protein metabolic process | 6.69980106637326e-05 |
| GO:0043687 | post-translational protein modification | 0.000107051834542066 |
| GO:0044260 | cellular macromolecule metabolic process | 0.000107051834542066 |
| GO:0044237 | cellular metabolic process | 0.000126985593279208 |
| GO:0030099 | myeloid cell differentiation | 0.000342648519484704 |
| GO:0019748 | secondary metabolic process | 0.000342648519484704 |
| GO:0006512 | ubiquitin cycle | 0.00082288921139161 |
| GO:0005622 | intracellular | 0.00255817147097704 |
| GO:0046483 | heterocycle metabolic process | 0.00307409917612956 |
| GO:0051188 | cofactor biosynthetic process | 0.00307409917612956 |
| GO:0030097 | hemopoiesis | 0.00307409917612956 |
| GO:0004998 | transferrin receptor activity | 0.00492449298195315 |
| GO:0030173 | integral to Golgi membrane | 0.00505719947569531 |
| GO:0031228 | intrinsic to Golgi membrane | 0.00505719947569531 |
| GO:0048534 | hemopoietic or lymphoid organ development | 0.006319060321647 |
| GO:0044238 | primary metabolic process | 0.00712872913789426 |
| GO:0005737 | cytoplasm | 0.00911146064391243 |
| GO:0002520 | immune system development | 0.00986555974178519 |
| GO:0044431 | Golgi apparatus part | 0.0149412997720628 |
| GO:0016874 | ligase activity | 0.0178826778015195 |
| GO:0007016 | cytoskeletal anchoring | 0.0191943601171486 |
| GO:0042541 | hemoglobin biosynthetic process | 0.0191943601171486 |
| GO:0005381 | iron ion transmembrane transporter activity | 0.0191943601171486 |
| GO:0000139 | Golgi membrane | 0.0212286450134798 |
| GO:0051016 | barbed-end actin filament capping | 0.0215113521451891 |
| GO:0004190 | aspartic-type endopeptidase activity | 0.0215113521451891 |
| GO:0044424 | intracellular part | 0.0215113521451891 |
| GO:0051325 | interphase | 0.0215113521451891 |
| GO:0051329 | interphase of mitotic cell cycle | 0.0215113521451891 |
| GO:0043170 | macromolecule metabolic process | 0.0225409448610969 |
| GO:0030835 | negative regulation of actin filament depolymerization | 0.02279619385475 |
| GO:0051693 | actin filament capping | 0.02279619385475 |
| GO:0020027 | hemoglobin metabolic process | 0.0250522658748396 |
| GO:0008373 | sialyltransferase activity | 0.0256122969500218 |
| GO:0030834 | regulation of actin filament depolymerization | 0.0276407269696161 |
| GO:0030042 | actin filament depolymerization | 0.0276407269696161 |
| GO:0043249 | erythrocyte maturation | 0.0334626367152821 |
| GO:0031301 | integral to organelle membrane | 0.0365350238383254 |
| GO:0010324 | membrane invagination | 0.0365350238383254 |
| GO:0006897 | endocytosis | 0.0365350238383254 |
| GO:0006879 | cellular iron ion homeostasis | 0.0365350238383254 |
| GO:0046915 | transition metal ion transmembrane transporter activity | 0.0365350238383254 |
| GO:0055072 | iron ion homeostasis | 0.0365350238383254 |
| GO:0005515 | protein binding | 0.0367014934270035 |
| GO:0031300 | intrinsic to organelle membrane | 0.0464084727675769 |
| GO:0016788 | hydrolase activity, acting on ester bonds | 0.0487894589467933 |
| GO:0030866 | cortical actin cytoskeleton organization and biogenesis | 0.0499058892076902 |
| GO:0004194 | pepsin A activity | 0.0499058892076902 |
| GO:0042578 | phosphoric ester hydrolase activity | 0.0499058892076902 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
| Ontology term | p-value | n |
|---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
