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MCL coexpression mm9:512: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0005057;receptor signaling protein activity;0.0158186854101761;83490,20963!GO:0046645;positive regulation of gamma-delta T cell activation;0.0158186854101761;20963!GO:0045586;regulation of gamma-delta T cell differentiation;0.0158186854101761;20963!GO:0045588;positive regulation of gamma-delta T cell differentiation;0.0158186854101761;20963!GO:0046643;regulation of gamma-delta T cell activation;0.0158186854101761;20963!GO:0043366;beta selection;0.0158186854101761;20963!GO:0004392;heme oxygenase (decyclizing) activity;0.0158186854101761;15369!GO:0046629;gamma-delta T cell activation;0.0158186854101761;20963!GO:0006788;heme oxidation;0.0158186854101761;15369!GO:0042492;gamma-delta T cell differentiation;0.0158186854101761;20963!GO:0032632;interleukin-3 production;0.0158186854101761;20963!GO:0045423;regulation of granulocyte macrophage colony-stimulating factor biosynthetic process;0.0158186854101761;20963!GO:0042223;interleukin-3 biosynthetic process;0.0158186854101761;20963!GO:0046638;positive regulation of alpha-beta T cell differentiation;0.0158186854101761;20963!GO:0045399;regulation of interleukin-3 biosynthetic process;0.0158186854101761;20963!GO:0032604;granulocyte macrophage colony-stimulating factor production;0.0158186854101761;20963!GO:0045425;positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process;0.0158186854101761;20963!GO:0006787;porphyrin catabolic process;0.0158186854101761;15369!GO:0045401;positive regulation of interleukin-3 biosynthetic process;0.0158186854101761;20963!GO:0042253;granulocyte macrophage colony-stimulating factor biosynthetic process;0.0158186854101761;20963!GO:0033015;tetrapyrrole catabolic process;0.0158186854101761;15369!GO:0043306;positive regulation of mast cell degranulation;0.0158186854101761;20963!GO:0045647;negative regulation of erythrocyte differentiation;0.0158186854101761;16909!GO:0046637;regulation of alpha-beta T cell differentiation;0.0158186854101761;20963!GO:0043304;regulation of mast cell degranulation;0.0158186854101761;20963!GO:0001820;serotonin secretion;0.0158186854101761;20963!GO:0005826;contractile ring;0.0158186854101761;19200!GO:0043302;positive regulation of leukocyte degranulation;0.0158186854101761;20963!GO:0019903;protein phosphatase binding;0.0172993173979733;19200!GO:0004716;receptor signaling protein tyrosine kinase activity;0.0172993173979733;20963!GO:0043300;regulation of leukocyte degranulation;0.0172993173979733;20963!GO:0045579;positive regulation of B cell differentiation;0.0172993173979733;20963!GO:0030097;hemopoiesis;0.0179514270874;16909,20963!GO:0032153;cell division site;0.0179514270874;19200!GO:0045921;positive regulation of exocytosis;0.0179514270874;20963!GO:0019815;B cell receptor complex;0.0179514270874;20963!GO:0032155;cell division site part;0.0179514270874;19200!GO:0050853;B cell receptor signaling pathway;0.0182841233001697;20963!GO:0043303;mast cell degranulation;0.0182841233001697;20963!GO:0002448;mast cell mediated immunity;0.0182841233001697;20963!GO:0019902;phosphatase binding;0.0182841233001697;19200!GO:0046641;positive regulation of alpha-beta T cell proliferation;0.0182841233001697;20963!GO:0048534;hemopoietic or lymphoid organ development;0.0182841233001697;16909,20963!GO:0005066;transmembrane receptor protein tyrosine kinase signaling protein activity;0.0196449609177903;83490!GO:0046635;positive regulation of alpha-beta T cell activation;0.0196449609177903;20963!GO:0002520;immune system development;0.0196449609177903;16909,20963!GO:0042101;T cell receptor complex;0.0199178977336042;20963!GO:0046640;regulation of alpha-beta T cell proliferation;0.0199178977336042;20963!GO:0045577;regulation of B cell differentiation;0.0199178977336042;20963!GO:0045646;regulation of erythrocyte differentiation;0.0199178977336042;16909!GO:0043299;leukocyte degranulation;0.0212768907620563;20963!GO:0007257;activation of JNK activity;0.0212768907620563;20963!GO:0046634;regulation of alpha-beta T cell activation;0.0225346567785881;20963!GO:0043507;positive regulation of JNK activity;0.0225346567785881;20963!GO:0045576;mast cell activation;0.023286216360908;20963!GO:0045582;positive regulation of T cell differentiation;0.023286216360908;20963!GO:0046633;alpha-beta T cell proliferation;0.023286216360908;20963!GO:0050850;positive regulation of calcium-mediated signaling;0.0239621154308482;20963!GO:0050848;regulation of calcium-mediated signaling;0.0239621154308482;20963!GO:0019814;immunoglobulin complex;0.0239621154308482;20963!GO:0045621;positive regulation of lymphocyte differentiation;0.026324782844713;20963!GO:0043506;regulation of JNK activity;0.026324782844713;20963!GO:0002444;myeloid leukocyte mediated immunity;0.026324782844713;20963!GO:0019370;leukotriene biosynthetic process;0.0267997444330044;20963!GO:0043450;alkene biosynthetic process;0.0267997444330044;20963!GO:0042168;heme metabolic process;0.0267997444330044;15369!GO:0045058;T cell selection;0.0272329666556482;20963!GO:0006691;leukotriene metabolic process;0.0272329666556482;20963!GO:0045580;regulation of T cell differentiation;0.0272329666556482;20963!GO:0033013;tetrapyrrole metabolic process;0.0272511784361059;15369!GO:0006778;porphyrin metabolic process;0.0272511784361059;15369!GO:0043449;alkene metabolic process;0.0272511784361059;20963!GO:0017157;regulation of exocytosis;0.0272511784361059;20963!GO:0001725;stress fiber;0.0279942282533293;19200!GO:0045638;negative regulation of myeloid cell differentiation;0.0279942282533293;16909!GO:0032432;actin filament bundle;0.0286982855242072;19200!GO:0001772;immunological synapse;0.0286982855242072;20963!GO:0019722;calcium-mediated signaling;0.0289992328944968;20963!GO:0046632;alpha-beta T cell differentiation;0.0289992328944968;20963!GO:0050731;positive regulation of peptidyl-tyrosine phosphorylation;0.0289992328944968;20963!GO:0045937;positive regulation of phosphate metabolic process;0.0296351105392341;20963!GO:0042327;positive regulation of phosphorylation;0.0296351105392341;20963!GO:0045619;regulation of lymphocyte differentiation;0.0306046902405463;20963!GO:0046456;icosanoid biosynthetic process;0.0315508251837164;20963!GO:0000910;cytokinesis;0.0323948723522591;19200!GO:0050871;positive regulation of B cell activation;0.0323948723522591;20963!GO:0001934;positive regulation of protein amino acid phosphorylation;0.0323948723522591;20963!GO:0002274;myeloid leukocyte activation;0.0323948723522591;20963!GO:0033240;positive regulation of amine metabolic process;0.0323948723522591;20963!GO:0045764;positive regulation of amino acid metabolic process;0.0323948723522591;20963!GO:0050851;antigen receptor-mediated signaling pathway;0.0323948723522591;20963!GO:0042102;positive regulation of T cell proliferation;0.0323948723522591;20963!GO:0044448;cell cortex part;0.0332288983549147;19200!GO:0006690;icosanoid metabolic process;0.0352139960995021;20963!GO:0046631;alpha-beta T cell activation;0.0356248379410609;20963!GO:0042440;pigment metabolic process;0.0356248379410609;15369!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0356547788286215;20963!GO:0051187;cofactor catabolic process;0.0356547788286215;15369!GO:0042108;positive regulation of cytokine biosynthetic process;0.0356547788286215;20963!GO:0046777;protein amino acid autophosphorylation;0.0360359566836278;20963!GO:0051050;positive regulation of transport;0.0360359566836278;20963!GO:0050730;regulation of peptidyl-tyrosine phosphorylation;0.0360806946379755;20963!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0360806946379755;20963!GO:0045637;regulation of myeloid cell differentiation;0.0360806946379755;16909!GO:0030183;B cell differentiation;0.0360806946379755;20963!GO:0016540;protein autoprocessing;0.0360806946379755;20963!GO:0000187;activation of MAPK activity;0.0360806946379755;20963!GO:0032946;positive regulation of mononuclear cell proliferation;0.0360806946379755;20963!GO:0002757;immune response-activating signal transduction;0.0360806946379755;20963!GO:0050671;positive regulation of lymphocyte proliferation;0.0360806946379755;20963!GO:0030218;erythrocyte differentiation;0.0364157538806666;16909!GO:0050864;regulation of B cell activation;0.0364157538806666;20963!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0367387925569082;20963!GO:0002764;immune response-regulating signal transduction;0.0367387925569082;20963!GO:0045727;positive regulation of translation;0.0383256338158725;20963!GO:0043406;positive regulation of MAP kinase activity;0.0389397889873295;20963!GO:0042129;regulation of T cell proliferation;0.0391409963062286;20963!GO:0031328;positive regulation of cellular biosynthetic process;0.0391409963062286;20963!GO:0050870;positive regulation of T cell activation;0.0391409963062286;20963!GO:0007254;JNK cascade;0.0391409963062286;20963!GO:0019748;secondary metabolic process;0.0391409963062286;15369!GO:0031098;stress-activated protein kinase signaling pathway;0.041511496768158;20963!GO:0005938;cell cortex;0.0420633321261785;19200!GO:0042035;regulation of cytokine biosynthetic process;0.0443691239202558;20963!GO:0033238;regulation of amine metabolic process;0.0448421745003913;20963!GO:0001932;regulation of protein amino acid phosphorylation;0.0448421745003913;20963!GO:0006521;regulation of amino acid metabolic process;0.0448421745003913;20963!GO:0032944;regulation of mononuclear cell proliferation;0.0448421745003913;20963!GO:0009891;positive regulation of biosynthetic process;0.0448421745003913;20963!GO:0050670;regulation of lymphocyte proliferation;0.0448421745003913;20963!GO:0005886;plasma membrane;0.0449410509959089;83490,12517,20963!GO:0042098;T cell proliferation;0.0449410509959089;20963!GO:0042325;regulation of phosphorylation;0.0449410509959089;20963!GO:0051174;regulation of phosphorus metabolic process;0.0449410509959089;20963!GO:0019220;regulation of phosphate metabolic process;0.0449410509959089;20963!GO:0018212;peptidyl-tyrosine modification;0.0449410509959089;20963!GO:0018108;peptidyl-tyrosine phosphorylation;0.0449410509959089;20963!GO:0042089;cytokine biosynthetic process;0.0471976051634346;20963!GO:0043405;regulation of MAP kinase activity;0.0471976051634346;20963!GO:0042107;cytokine metabolic process;0.0471976051634346;20963!GO:0051251;positive regulation of lymphocyte activation;0.0471976051634346;20963!GO:0030217;T cell differentiation;0.0471976051634346;20963!GO:0050863;regulation of T cell activation;0.0483909414071186;20963!GO:0045055;regulated secretory pathway;0.0484781921249234;20963!GO:0002376;immune system process;0.0484781921249234;16909,20963!GO:0009967;positive regulation of signal transduction;0.0488878737328907;20963!GO:0046483;heterocycle metabolic process;0.0489624807382904;15369!GO:0016485;protein processing;0.0489624807382904;20963!
|gostat_on_MCL_coexpression=GO:0005057;receptor signaling protein activity;0.0158186854101761;83490,20963!GO:0046645;positive regulation of gamma-delta T cell activation;0.0158186854101761;20963!GO:0045586;regulation of gamma-delta T cell differentiation;0.0158186854101761;20963!GO:0045588;positive regulation of gamma-delta T cell differentiation;0.0158186854101761;20963!GO:0046643;regulation of gamma-delta T cell activation;0.0158186854101761;20963!GO:0043366;beta selection;0.0158186854101761;20963!GO:0004392;heme oxygenase (decyclizing) activity;0.0158186854101761;15369!GO:0046629;gamma-delta T cell activation;0.0158186854101761;20963!GO:0006788;heme oxidation;0.0158186854101761;15369!GO:0042492;gamma-delta T cell differentiation;0.0158186854101761;20963!GO:0032632;interleukin-3 production;0.0158186854101761;20963!GO:0045423;regulation of granulocyte macrophage colony-stimulating factor biosynthetic process;0.0158186854101761;20963!GO:0042223;interleukin-3 biosynthetic process;0.0158186854101761;20963!GO:0046638;positive regulation of alpha-beta T cell differentiation;0.0158186854101761;20963!GO:0045399;regulation of interleukin-3 biosynthetic process;0.0158186854101761;20963!GO:0032604;granulocyte macrophage colony-stimulating factor production;0.0158186854101761;20963!GO:0045425;positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process;0.0158186854101761;20963!GO:0006787;porphyrin catabolic process;0.0158186854101761;15369!GO:0045401;positive regulation of interleukin-3 biosynthetic process;0.0158186854101761;20963!GO:0042253;granulocyte macrophage colony-stimulating factor biosynthetic process;0.0158186854101761;20963!GO:0033015;tetrapyrrole catabolic process;0.0158186854101761;15369!GO:0043306;positive regulation of mast cell degranulation;0.0158186854101761;20963!GO:0045647;negative regulation of erythrocyte differentiation;0.0158186854101761;16909!GO:0046637;regulation of alpha-beta T cell differentiation;0.0158186854101761;20963!GO:0043304;regulation of mast cell degranulation;0.0158186854101761;20963!GO:0001820;serotonin secretion;0.0158186854101761;20963!GO:0005826;contractile ring;0.0158186854101761;19200!GO:0043302;positive regulation of leukocyte degranulation;0.0158186854101761;20963!GO:0019903;protein phosphatase binding;0.0172993173979733;19200!GO:0004716;receptor signaling protein tyrosine kinase activity;0.0172993173979733;20963!GO:0043300;regulation of leukocyte degranulation;0.0172993173979733;20963!GO:0045579;positive regulation of B cell differentiation;0.0172993173979733;20963!GO:0030097;hemopoiesis;0.0179514270874;16909,20963!GO:0032153;cell division site;0.0179514270874;19200!GO:0045921;positive regulation of exocytosis;0.0179514270874;20963!GO:0019815;B cell receptor complex;0.0179514270874;20963!GO:0032155;cell division site part;0.0179514270874;19200!GO:0050853;B cell receptor signaling pathway;0.0182841233001697;20963!GO:0043303;mast cell degranulation;0.0182841233001697;20963!GO:0002448;mast cell mediated immunity;0.0182841233001697;20963!GO:0019902;phosphatase binding;0.0182841233001697;19200!GO:0046641;positive regulation of alpha-beta T cell proliferation;0.0182841233001697;20963!GO:0048534;hemopoietic or lymphoid organ development;0.0182841233001697;16909,20963!GO:0005066;transmembrane receptor protein tyrosine kinase signaling protein activity;0.0196449609177903;83490!GO:0046635;positive regulation of alpha-beta T cell activation;0.0196449609177903;20963!GO:0002520;immune system development;0.0196449609177903;16909,20963!GO:0042101;T cell receptor complex;0.0199178977336042;20963!GO:0046640;regulation of alpha-beta T cell proliferation;0.0199178977336042;20963!GO:0045577;regulation of B cell differentiation;0.0199178977336042;20963!GO:0045646;regulation of erythrocyte differentiation;0.0199178977336042;16909!GO:0043299;leukocyte degranulation;0.0212768907620563;20963!GO:0007257;activation of JNK activity;0.0212768907620563;20963!GO:0046634;regulation of alpha-beta T cell activation;0.0225346567785881;20963!GO:0043507;positive regulation of JNK activity;0.0225346567785881;20963!GO:0045576;mast cell activation;0.023286216360908;20963!GO:0045582;positive regulation of T cell differentiation;0.023286216360908;20963!GO:0046633;alpha-beta T cell proliferation;0.023286216360908;20963!GO:0050850;positive regulation of calcium-mediated signaling;0.0239621154308482;20963!GO:0050848;regulation of calcium-mediated signaling;0.0239621154308482;20963!GO:0019814;immunoglobulin complex;0.0239621154308482;20963!GO:0045621;positive regulation of lymphocyte differentiation;0.026324782844713;20963!GO:0043506;regulation of JNK activity;0.026324782844713;20963!GO:0002444;myeloid leukocyte mediated immunity;0.026324782844713;20963!GO:0019370;leukotriene biosynthetic process;0.0267997444330044;20963!GO:0043450;alkene biosynthetic process;0.0267997444330044;20963!GO:0042168;heme metabolic process;0.0267997444330044;15369!GO:0045058;T cell selection;0.0272329666556482;20963!GO:0006691;leukotriene metabolic process;0.0272329666556482;20963!GO:0045580;regulation of T cell differentiation;0.0272329666556482;20963!GO:0033013;tetrapyrrole metabolic process;0.0272511784361059;15369!GO:0006778;porphyrin metabolic process;0.0272511784361059;15369!GO:0043449;alkene metabolic process;0.0272511784361059;20963!GO:0017157;regulation of exocytosis;0.0272511784361059;20963!GO:0001725;stress fiber;0.0279942282533293;19200!GO:0045638;negative regulation of myeloid cell differentiation;0.0279942282533293;16909!GO:0032432;actin filament bundle;0.0286982855242072;19200!GO:0001772;immunological synapse;0.0286982855242072;20963!GO:0019722;calcium-mediated signaling;0.0289992328944968;20963!GO:0046632;alpha-beta T cell differentiation;0.0289992328944968;20963!GO:0050731;positive regulation of peptidyl-tyrosine phosphorylation;0.0289992328944968;20963!GO:0045937;positive regulation of phosphate metabolic process;0.0296351105392341;20963!GO:0042327;positive regulation of phosphorylation;0.0296351105392341;20963!GO:0045619;regulation of lymphocyte differentiation;0.0306046902405463;20963!GO:0046456;icosanoid biosynthetic process;0.0315508251837164;20963!GO:0000910;cytokinesis;0.0323948723522591;19200!GO:0050871;positive regulation of B cell activation;0.0323948723522591;20963!GO:0001934;positive regulation of protein amino acid phosphorylation;0.0323948723522591;20963!GO:0002274;myeloid leukocyte activation;0.0323948723522591;20963!GO:0033240;positive regulation of amine metabolic process;0.0323948723522591;20963!GO:0045764;positive regulation of amino acid metabolic process;0.0323948723522591;20963!GO:0050851;antigen receptor-mediated signaling pathway;0.0323948723522591;20963!GO:0042102;positive regulation of T cell proliferation;0.0323948723522591;20963!GO:0044448;cell cortex part;0.0332288983549147;19200!GO:0006690;icosanoid metabolic process;0.0352139960995021;20963!GO:0046631;alpha-beta T cell activation;0.0356248379410609;20963!GO:0042440;pigment metabolic process;0.0356248379410609;15369!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0356547788286215;20963!GO:0051187;cofactor catabolic process;0.0356547788286215;15369!GO:0042108;positive regulation of cytokine biosynthetic process;0.0356547788286215;20963!GO:0046777;protein amino acid autophosphorylation;0.0360359566836278;20963!GO:0051050;positive regulation of transport;0.0360359566836278;20963!GO:0050730;regulation of peptidyl-tyrosine phosphorylation;0.0360806946379755;20963!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0360806946379755;20963!GO:0045637;regulation of myeloid cell differentiation;0.0360806946379755;16909!GO:0030183;B cell differentiation;0.0360806946379755;20963!GO:0016540;protein autoprocessing;0.0360806946379755;20963!GO:0000187;activation of MAPK activity;0.0360806946379755;20963!GO:0032946;positive regulation of mononuclear cell proliferation;0.0360806946379755;20963!GO:0002757;immune response-activating signal transduction;0.0360806946379755;20963!GO:0050671;positive regulation of lymphocyte proliferation;0.0360806946379755;20963!GO:0030218;erythrocyte differentiation;0.0364157538806666;16909!GO:0050864;regulation of B cell activation;0.0364157538806666;20963!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0367387925569082;20963!GO:0002764;immune response-regulating signal transduction;0.0367387925569082;20963!GO:0045727;positive regulation of translation;0.0383256338158725;20963!GO:0043406;positive regulation of MAP kinase activity;0.0389397889873295;20963!GO:0042129;regulation of T cell proliferation;0.0391409963062286;20963!GO:0031328;positive regulation of cellular biosynthetic process;0.0391409963062286;20963!GO:0050870;positive regulation of T cell activation;0.0391409963062286;20963!GO:0007254;JNK cascade;0.0391409963062286;20963!GO:0019748;secondary metabolic process;0.0391409963062286;15369!GO:0031098;stress-activated protein kinase signaling pathway;0.041511496768158;20963!GO:0005938;cell cortex;0.0420633321261785;19200!GO:0042035;regulation of cytokine biosynthetic process;0.0443691239202558;20963!GO:0033238;regulation of amine metabolic process;0.0448421745003913;20963!GO:0001932;regulation of protein amino acid phosphorylation;0.0448421745003913;20963!GO:0006521;regulation of amino acid metabolic process;0.0448421745003913;20963!GO:0032944;regulation of mononuclear cell proliferation;0.0448421745003913;20963!GO:0009891;positive regulation of biosynthetic process;0.0448421745003913;20963!GO:0050670;regulation of lymphocyte proliferation;0.0448421745003913;20963!GO:0005886;plasma membrane;0.0449410509959089;83490,12517,20963!GO:0042098;T cell proliferation;0.0449410509959089;20963!GO:0042325;regulation of phosphorylation;0.0449410509959089;20963!GO:0051174;regulation of phosphorus metabolic process;0.0449410509959089;20963!GO:0019220;regulation of phosphate metabolic process;0.0449410509959089;20963!GO:0018212;peptidyl-tyrosine modification;0.0449410509959089;20963!GO:0018108;peptidyl-tyrosine phosphorylation;0.0449410509959089;20963!GO:0042089;cytokine biosynthetic process;0.0471976051634346;20963!GO:0043405;regulation of MAP kinase activity;0.0471976051634346;20963!GO:0042107;cytokine metabolic process;0.0471976051634346;20963!GO:0051251;positive regulation of lymphocyte activation;0.0471976051634346;20963!GO:0030217;T cell differentiation;0.0471976051634346;20963!GO:0050863;regulation of T cell activation;0.0483909414071186;20963!GO:0045055;regulated secretory pathway;0.0484781921249234;20963!GO:0002376;immune system process;0.0484781921249234;16909,20963!GO:0009967;positive regulation of signal transduction;0.0488878737328907;20963!GO:0046483;heterocycle metabolic process;0.0489624807382904;15369!GO:0016485;protein processing;0.0489624807382904;20963!
}}
}}

Revision as of 12:42, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:33847803..33847820,-p2@Fam26f
Mm9::chr13:52692289..52692308,+p6@Syk
Mm9::chr13:52692323..52692334,+p11@Syk
Mm9::chr16:4726284..4726290,+p6@Hmox2
Mm9::chr17:5195701..5195737,+p@chr17:5195701..5195737
+
Mm9::chr19:41406810..41406843,-p@chr19:41406810..41406843
-
Mm9::chr19:41406848..41406866,-p@chr19:41406848..41406866
-
Mm9::chr19:41406924..41406948,-p@chr19:41406924..41406948
-
Mm9::chr1:34530108..34530141,+p@chr1:34530108..34530141
+
Mm9::chr2:103810335..103810349,+p10@Lmo2
Mm9::chr4:43467409..43467419,-p3@Cd72
p3@LOC100504743
Mm9::chr5:135083184..135083189,-p@chr5:135083184..135083189
-
Mm9::chr9:55937976..55937991,+p10@Pstpip1
Mm9::chr9:55938017..55938045,+p4@Pstpip1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005057receptor signaling protein activity0.0158186854101761
GO:0046645positive regulation of gamma-delta T cell activation0.0158186854101761
GO:0045586regulation of gamma-delta T cell differentiation0.0158186854101761
GO:0045588positive regulation of gamma-delta T cell differentiation0.0158186854101761
GO:0046643regulation of gamma-delta T cell activation0.0158186854101761
GO:0043366beta selection0.0158186854101761
GO:0004392heme oxygenase (decyclizing) activity0.0158186854101761
GO:0046629gamma-delta T cell activation0.0158186854101761
GO:0006788heme oxidation0.0158186854101761
GO:0042492gamma-delta T cell differentiation0.0158186854101761
GO:0032632interleukin-3 production0.0158186854101761
GO:0045423regulation of granulocyte macrophage colony-stimulating factor biosynthetic process0.0158186854101761
GO:0042223interleukin-3 biosynthetic process0.0158186854101761
GO:0046638positive regulation of alpha-beta T cell differentiation0.0158186854101761
GO:0045399regulation of interleukin-3 biosynthetic process0.0158186854101761
GO:0032604granulocyte macrophage colony-stimulating factor production0.0158186854101761
GO:0045425positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process0.0158186854101761
GO:0006787porphyrin catabolic process0.0158186854101761
GO:0045401positive regulation of interleukin-3 biosynthetic process0.0158186854101761
GO:0042253granulocyte macrophage colony-stimulating factor biosynthetic process0.0158186854101761
GO:0033015tetrapyrrole catabolic process0.0158186854101761
GO:0043306positive regulation of mast cell degranulation0.0158186854101761
GO:0045647negative regulation of erythrocyte differentiation0.0158186854101761
GO:0046637regulation of alpha-beta T cell differentiation0.0158186854101761
GO:0043304regulation of mast cell degranulation0.0158186854101761
GO:0001820serotonin secretion0.0158186854101761
GO:0005826contractile ring0.0158186854101761
GO:0043302positive regulation of leukocyte degranulation0.0158186854101761
GO:0019903protein phosphatase binding0.0172993173979733
GO:0004716receptor signaling protein tyrosine kinase activity0.0172993173979733
GO:0043300regulation of leukocyte degranulation0.0172993173979733
GO:0045579positive regulation of B cell differentiation0.0172993173979733
GO:0030097hemopoiesis0.0179514270874
GO:0032153cell division site0.0179514270874
GO:0045921positive regulation of exocytosis0.0179514270874
GO:0019815B cell receptor complex0.0179514270874
GO:0032155cell division site part0.0179514270874
GO:0050853B cell receptor signaling pathway0.0182841233001697
GO:0043303mast cell degranulation0.0182841233001697
GO:0002448mast cell mediated immunity0.0182841233001697
GO:0019902phosphatase binding0.0182841233001697
GO:0046641positive regulation of alpha-beta T cell proliferation0.0182841233001697
GO:0048534hemopoietic or lymphoid organ development0.0182841233001697
GO:0005066transmembrane receptor protein tyrosine kinase signaling protein activity0.0196449609177903
GO:0046635positive regulation of alpha-beta T cell activation0.0196449609177903
GO:0002520immune system development0.0196449609177903
GO:0042101T cell receptor complex0.0199178977336042
GO:0046640regulation of alpha-beta T cell proliferation0.0199178977336042
GO:0045577regulation of B cell differentiation0.0199178977336042
GO:0045646regulation of erythrocyte differentiation0.0199178977336042
GO:0043299leukocyte degranulation0.0212768907620563
GO:0007257activation of JNK activity0.0212768907620563
GO:0046634regulation of alpha-beta T cell activation0.0225346567785881
GO:0043507positive regulation of JNK activity0.0225346567785881
GO:0045576mast cell activation0.023286216360908
GO:0045582positive regulation of T cell differentiation0.023286216360908
GO:0046633alpha-beta T cell proliferation0.023286216360908
GO:0050850positive regulation of calcium-mediated signaling0.0239621154308482
GO:0050848regulation of calcium-mediated signaling0.0239621154308482
GO:0019814immunoglobulin complex0.0239621154308482
GO:0045621positive regulation of lymphocyte differentiation0.026324782844713
GO:0043506regulation of JNK activity0.026324782844713
GO:0002444myeloid leukocyte mediated immunity0.026324782844713
GO:0019370leukotriene biosynthetic process0.0267997444330044
GO:0043450alkene biosynthetic process0.0267997444330044
GO:0042168heme metabolic process0.0267997444330044
GO:0045058T cell selection0.0272329666556482
GO:0006691leukotriene metabolic process0.0272329666556482
GO:0045580regulation of T cell differentiation0.0272329666556482
GO:0033013tetrapyrrole metabolic process0.0272511784361059
GO:0006778porphyrin metabolic process0.0272511784361059
GO:0043449alkene metabolic process0.0272511784361059
GO:0017157regulation of exocytosis0.0272511784361059
GO:0001725stress fiber0.0279942282533293
GO:0045638negative regulation of myeloid cell differentiation0.0279942282533293
GO:0032432actin filament bundle0.0286982855242072
GO:0001772immunological synapse0.0286982855242072
GO:0019722calcium-mediated signaling0.0289992328944968
GO:0046632alpha-beta T cell differentiation0.0289992328944968
GO:0050731positive regulation of peptidyl-tyrosine phosphorylation0.0289992328944968
GO:0045937positive regulation of phosphate metabolic process0.0296351105392341
GO:0042327positive regulation of phosphorylation0.0296351105392341
GO:0045619regulation of lymphocyte differentiation0.0306046902405463
GO:0046456icosanoid biosynthetic process0.0315508251837164
GO:0000910cytokinesis0.0323948723522591
GO:0050871positive regulation of B cell activation0.0323948723522591
GO:0001934positive regulation of protein amino acid phosphorylation0.0323948723522591
GO:0002274myeloid leukocyte activation0.0323948723522591
GO:0033240positive regulation of amine metabolic process0.0323948723522591
GO:0045764positive regulation of amino acid metabolic process0.0323948723522591
GO:0050851antigen receptor-mediated signaling pathway0.0323948723522591
GO:0042102positive regulation of T cell proliferation0.0323948723522591
GO:0044448cell cortex part0.0332288983549147
GO:0006690icosanoid metabolic process0.0352139960995021
GO:0046631alpha-beta T cell activation0.0356248379410609
GO:0042440pigment metabolic process0.0356248379410609
GO:0002429immune response-activating cell surface receptor signaling pathway0.0356547788286215
GO:0051187cofactor catabolic process0.0356547788286215
GO:0042108positive regulation of cytokine biosynthetic process0.0356547788286215
GO:0046777protein amino acid autophosphorylation0.0360359566836278
GO:0051050positive regulation of transport0.0360359566836278
GO:0050730regulation of peptidyl-tyrosine phosphorylation0.0360806946379755
GO:0002768immune response-regulating cell surface receptor signaling pathway0.0360806946379755
GO:0045637regulation of myeloid cell differentiation0.0360806946379755
GO:0030183B cell differentiation0.0360806946379755
GO:0016540protein autoprocessing0.0360806946379755
GO:0000187activation of MAPK activity0.0360806946379755
GO:0032946positive regulation of mononuclear cell proliferation0.0360806946379755
GO:0002757immune response-activating signal transduction0.0360806946379755
GO:0050671positive regulation of lymphocyte proliferation0.0360806946379755
GO:0030218erythrocyte differentiation0.0364157538806666
GO:0050864regulation of B cell activation0.0364157538806666
GO:0004715non-membrane spanning protein tyrosine kinase activity0.0367387925569082
GO:0002764immune response-regulating signal transduction0.0367387925569082
GO:0045727positive regulation of translation0.0383256338158725
GO:0043406positive regulation of MAP kinase activity0.0389397889873295
GO:0042129regulation of T cell proliferation0.0391409963062286
GO:0031328positive regulation of cellular biosynthetic process0.0391409963062286
GO:0050870positive regulation of T cell activation0.0391409963062286
GO:0007254JNK cascade0.0391409963062286
GO:0019748secondary metabolic process0.0391409963062286
GO:0031098stress-activated protein kinase signaling pathway0.041511496768158
GO:0005938cell cortex0.0420633321261785
GO:0042035regulation of cytokine biosynthetic process0.0443691239202558
GO:0033238regulation of amine metabolic process0.0448421745003913
GO:0001932regulation of protein amino acid phosphorylation0.0448421745003913
GO:0006521regulation of amino acid metabolic process0.0448421745003913
GO:0032944regulation of mononuclear cell proliferation0.0448421745003913
GO:0009891positive regulation of biosynthetic process0.0448421745003913
GO:0050670regulation of lymphocyte proliferation0.0448421745003913
GO:0005886plasma membrane0.0449410509959089
GO:0042098T cell proliferation0.0449410509959089
GO:0042325regulation of phosphorylation0.0449410509959089
GO:0051174regulation of phosphorus metabolic process0.0449410509959089
GO:0019220regulation of phosphate metabolic process0.0449410509959089
GO:0018212peptidyl-tyrosine modification0.0449410509959089
GO:0018108peptidyl-tyrosine phosphorylation0.0449410509959089
GO:0042089cytokine biosynthetic process0.0471976051634346
GO:0043405regulation of MAP kinase activity0.0471976051634346
GO:0042107cytokine metabolic process0.0471976051634346
GO:0051251positive regulation of lymphocyte activation0.0471976051634346
GO:0030217T cell differentiation0.0471976051634346
GO:0050863regulation of T cell activation0.0483909414071186
GO:0045055regulated secretory pathway0.0484781921249234
GO:0002376immune system process0.0484781921249234
GO:0009967positive regulation of signal transduction0.0488878737328907
GO:0046483heterocycle metabolic process0.0489624807382904
GO:0016485protein processing0.0489624807382904



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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