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MCL coexpression mm9:2203: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0015665;alcohol transmembrane transporter activity;0.00164356544129732;224674!GO:0015794;glycerol-3-phosphate transport;0.00164356544129732;224674!GO:0015793;glycerol transport;0.00164356544129732;224674!GO:0015169;glycerol-3-phosphate transmembrane transporter activity;0.00164356544129732;224674!GO:0015168;glycerol transmembrane transporter activity;0.00164356544129732;224674!GO:0015166;polyol transmembrane transporter activity;0.00164356544129732;224674!GO:0006127;glycerophosphate shuttle;0.00164356544129732;224674!GO:0002065;columnar/cuboidal epithelial cell differentiation;0.00230092858385784;27428!GO:0015791;polyol transport;0.00230092858385784;224674!GO:0002066;columnar/cuboidal epithelial cell development;0.00230092858385784;27428!GO:0006072;glycerol-3-phosphate metabolic process;0.00627457213097509;224674!GO:0002064;epithelial cell development;0.00671012245769187;27428!GO:0006071;glycerol metabolic process;0.0164270998043318;224674!GO:0019751;polyol metabolic process;0.0164270998043318;224674!GO:0030855;epithelial cell differentiation;0.0233848781821928;27428!GO:0005351;sugar:hydrogen ion symporter activity;0.0233848781821928;224674!GO:0051119;sugar transmembrane transporter activity;0.0233848781821928;224674!GO:0015144;carbohydrate transmembrane transporter activity;0.0233848781821928;224674!GO:0001843;neural tube closure;0.0233848781821928;27428!GO:0014020;primary neural tube formation;0.0233848781821928;27428!GO:0022603;regulation of anatomical structure morphogenesis;0.0233848781821928;27428!GO:0008360;regulation of cell shape;0.0233848781821928;27428!GO:0022604;regulation of cell morphogenesis;0.0233848781821928;27428!GO:0016324;apical plasma membrane;0.0233848781821928;27428!GO:0001841;neural tube formation;0.0233848781821928;27428!GO:0001839;neural plate morphogenesis;0.0233848781821928;27428!GO:0001840;neural plate development;0.0233848781821928;27428!GO:0001838;embryonic epithelial tube formation;0.0233848781821928;27428!GO:0005912;adherens junction;0.0237371809789831;27428!GO:0008643;carbohydrate transport;0.0237371809789831;224674!GO:0021915;neural tube development;0.0240810054663014;27428!GO:0016331;morphogenesis of embryonic epithelium;0.0261939190023719;27428!GO:0045177;apical part of cell;0.0267890120980656;27428!GO:0043296;apical junction complex;0.0295120490852277;27428!GO:0016327;apicolateral plasma membrane;0.0295120490852277;27428!GO:0002009;morphogenesis of an epithelium;0.0391772335293738;27428!GO:0015293;symporter activity;0.0412061163507711;224674!GO:0035239;tube morphogenesis;0.0440692222694824;27428!GO:0005911;intercellular junction;0.0440692222694824;27428!GO:0030036;actin cytoskeleton organization and biogenesis;0.0441084378769543;27428!GO:0030029;actin filament-based process;0.0460924290274504;27428!GO:0015291;secondary active transmembrane transporter activity;0.0479801284305496;224674!
|gostat_on_MCL_coexpression=GO:0015665;alcohol transmembrane transporter activity;0.00164356544129732;224674!GO:0015794;glycerol-3-phosphate transport;0.00164356544129732;224674!GO:0015793;glycerol transport;0.00164356544129732;224674!GO:0015169;glycerol-3-phosphate transmembrane transporter activity;0.00164356544129732;224674!GO:0015168;glycerol transmembrane transporter activity;0.00164356544129732;224674!GO:0015166;polyol transmembrane transporter activity;0.00164356544129732;224674!GO:0006127;glycerophosphate shuttle;0.00164356544129732;224674!GO:0002065;columnar/cuboidal epithelial cell differentiation;0.00230092858385784;27428!GO:0015791;polyol transport;0.00230092858385784;224674!GO:0002066;columnar/cuboidal epithelial cell development;0.00230092858385784;27428!GO:0006072;glycerol-3-phosphate metabolic process;0.00627457213097509;224674!GO:0002064;epithelial cell development;0.00671012245769187;27428!GO:0006071;glycerol metabolic process;0.0164270998043318;224674!GO:0019751;polyol metabolic process;0.0164270998043318;224674!GO:0030855;epithelial cell differentiation;0.0233848781821928;27428!GO:0005351;sugar:hydrogen ion symporter activity;0.0233848781821928;224674!GO:0051119;sugar transmembrane transporter activity;0.0233848781821928;224674!GO:0015144;carbohydrate transmembrane transporter activity;0.0233848781821928;224674!GO:0001843;neural tube closure;0.0233848781821928;27428!GO:0014020;primary neural tube formation;0.0233848781821928;27428!GO:0022603;regulation of anatomical structure morphogenesis;0.0233848781821928;27428!GO:0008360;regulation of cell shape;0.0233848781821928;27428!GO:0022604;regulation of cell morphogenesis;0.0233848781821928;27428!GO:0016324;apical plasma membrane;0.0233848781821928;27428!GO:0001841;neural tube formation;0.0233848781821928;27428!GO:0001839;neural plate morphogenesis;0.0233848781821928;27428!GO:0001840;neural plate development;0.0233848781821928;27428!GO:0001838;embryonic epithelial tube formation;0.0233848781821928;27428!GO:0005912;adherens junction;0.0237371809789831;27428!GO:0008643;carbohydrate transport;0.0237371809789831;224674!GO:0021915;neural tube development;0.0240810054663014;27428!GO:0016331;morphogenesis of embryonic epithelium;0.0261939190023719;27428!GO:0045177;apical part of cell;0.0267890120980656;27428!GO:0043296;apical junction complex;0.0295120490852277;27428!GO:0016327;apicolateral plasma membrane;0.0295120490852277;27428!GO:0002009;morphogenesis of an epithelium;0.0391772335293738;27428!GO:0015293;symporter activity;0.0412061163507711;224674!GO:0035239;tube morphogenesis;0.0440692222694824;27428!GO:0005911;intercellular junction;0.0440692222694824;27428!GO:0030036;actin cytoskeleton organization and biogenesis;0.0441084378769543;27428!GO:0030029;actin filament-based process;0.0460924290274504;27428!GO:0015291;secondary active transmembrane transporter activity;0.0479801284305496;224674!
}}
}}

Revision as of 13:09, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:31433667..31433739,+p2@Slc37a1
Mm9::chr17:31433741..31433761,+p3@Slc37a1
Mm9::chr5:93238358..93238397,+p2@Shroom3
Mm9::chr5:93238398..93238462,+p1@Shroom3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0015665alcohol transmembrane transporter activity0.00164356544129732
GO:0015794glycerol-3-phosphate transport0.00164356544129732
GO:0015793glycerol transport0.00164356544129732
GO:0015169glycerol-3-phosphate transmembrane transporter activity0.00164356544129732
GO:0015168glycerol transmembrane transporter activity0.00164356544129732
GO:0015166polyol transmembrane transporter activity0.00164356544129732
GO:0006127glycerophosphate shuttle0.00164356544129732
GO:0002065columnar/cuboidal epithelial cell differentiation0.00230092858385784
GO:0015791polyol transport0.00230092858385784
GO:0002066columnar/cuboidal epithelial cell development0.00230092858385784
GO:0006072glycerol-3-phosphate metabolic process0.00627457213097509
GO:0002064epithelial cell development0.00671012245769187
GO:0006071glycerol metabolic process0.0164270998043318
GO:0019751polyol metabolic process0.0164270998043318
GO:0030855epithelial cell differentiation0.0233848781821928
GO:0005351sugar:hydrogen ion symporter activity0.0233848781821928
GO:0051119sugar transmembrane transporter activity0.0233848781821928
GO:0015144carbohydrate transmembrane transporter activity0.0233848781821928
GO:0001843neural tube closure0.0233848781821928
GO:0014020primary neural tube formation0.0233848781821928
GO:0022603regulation of anatomical structure morphogenesis0.0233848781821928
GO:0008360regulation of cell shape0.0233848781821928
GO:0022604regulation of cell morphogenesis0.0233848781821928
GO:0016324apical plasma membrane0.0233848781821928
GO:0001841neural tube formation0.0233848781821928
GO:0001839neural plate morphogenesis0.0233848781821928
GO:0001840neural plate development0.0233848781821928
GO:0001838embryonic epithelial tube formation0.0233848781821928
GO:0005912adherens junction0.0237371809789831
GO:0008643carbohydrate transport0.0237371809789831
GO:0021915neural tube development0.0240810054663014
GO:0016331morphogenesis of embryonic epithelium0.0261939190023719
GO:0045177apical part of cell0.0267890120980656
GO:0043296apical junction complex0.0295120490852277
GO:0016327apicolateral plasma membrane0.0295120490852277
GO:0002009morphogenesis of an epithelium0.0391772335293738
GO:0015293symporter activity0.0412061163507711
GO:0035239tube morphogenesis0.0440692222694824
GO:0005911intercellular junction0.0440692222694824
GO:0030036actin cytoskeleton organization and biogenesis0.0441084378769543
GO:0030029actin filament-based process0.0460924290274504
GO:0015291secondary active transmembrane transporter activity0.0479801284305496



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}