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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0045030;UTP-activated nucleotide receptor activity;0.00241049661166059;57385!GO:0015065;uridine nucleotide receptor activity;0.00241049661166059;57385!GO:0019103;pyrimidine nucleotide binding;0.00241049661166059;57385!GO:0030321;transepithelial chloride transport;0.00271173439809575;57385!GO:0045028;purinergic nucleotide receptor activity, G-protein coupled;0.0162556969641369;57385!GO:0001608;nucleotide receptor activity, G-protein coupled;0.0162556969641369;57385!GO:0016502;nucleotide receptor activity;0.0162556969641369;57385!GO:0001614;purinergic nucleotide receptor activity;0.0162556969641369;57385!GO:0006821;chloride transport;0.023666203741274;57385!
|gostat_on_MCL_coexpression=GO:0045030;UTP-activated nucleotide receptor activity;0.00241049661166059;57385!GO:0015065;uridine nucleotide receptor activity;0.00241049661166059;57385!GO:0019103;pyrimidine nucleotide binding;0.00241049661166059;57385!GO:0030321;transepithelial chloride transport;0.00271173439809575;57385!GO:0045028;purinergic nucleotide receptor activity, G-protein coupled;0.0162556969641369;57385!GO:0001608;nucleotide receptor activity, G-protein coupled;0.0162556969641369;57385!GO:0016502;nucleotide receptor activity;0.0162556969641369;57385!GO:0001614;purinergic nucleotide receptor activity;0.0162556969641369;57385!GO:0006821;chloride transport;0.023666203741274;57385!
}}
}}

Revision as of 13:17, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:72249038..72249060,+p3@Ggt6
Mm9::chr11:72249067..72249080,+p4@Ggt6
Mm9::chrX:97790199..97790215,-p1@P2ry4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0045030UTP-activated nucleotide receptor activity0.00241049661166059
GO:0015065uridine nucleotide receptor activity0.00241049661166059
GO:0019103pyrimidine nucleotide binding0.00241049661166059
GO:0030321transepithelial chloride transport0.00271173439809575
GO:0045028purinergic nucleotide receptor activity, G-protein coupled0.0162556969641369
GO:0001608nucleotide receptor activity, G-protein coupled0.0162556969641369
GO:0016502nucleotide receptor activity0.0162556969641369
GO:0001614purinergic nucleotide receptor activity0.0162556969641369
GO:0006821chloride transport0.023666203741274



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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