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MCL coexpression mm9:277: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00539596290526655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639243382371494,1.28704884291515,0.805978517525808,1.03047765312223,1.02263318429309,0.331770811567786,0,0,0,0,0,0,0,0,0,0,0.516097782103462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.536205372924025,0,0,0,0,0,0,0,0.147057022858808,0.10536076625968,0,0.137398724818722,0.117946305307076,0.274109013944987,0.386530944887019,0.641186930020927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.017244733229267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00539596290526655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639243382371494,1.28704884291515,0.805978517525808,1.03047765312223,1.02263318429309,0.331770811567786,0,0,0,0,0,0,0,0,0,0,0.516097782103462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.536205372924025,0,0,0,0,0,0,0,0.147057022858808,0.10536076625968,0,0.137398724818722,0.117946305307076,0.274109013944987,0.386530944887019,0.641186930020927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.017244733229267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000181!3.96e-18!5;CL:0000417!3.96e-18!5;CL:0000668!3.96e-18!5;CL:0000412!3.96e-18!5;CL:0000182!3.96e-18!5
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!7.46e-39!22;UBERON:0007499!7.46e-39!22;UBERON:0006925!7.46e-39!22;UBERON:0009497!7.46e-39!22;UBERON:0000015!7.46e-39!22;UBERON:0002423!7.46e-39!22;UBERON:0006235!7.46e-39!22;UBERON:0008835!7.46e-39!22;UBERON:0003894!7.46e-39!22;UBERON:0004161!7.46e-39!22;UBERON:0008836!7.46e-39!22;UBERON:0009854!4.29e-37!23;UBERON:0009856!4.29e-37!23;UBERON:0002365!5.37e-34!25;UBERON:0002330!5.37e-34!25;UBERON:0005256!4.00e-18!45;UBERON:0003914!2.81e-17!47;UBERON:0005172!1.69e-16!49;UBERON:0005173!1.69e-16!49;UBERON:0002417!1.69e-16!49;UBERON:0000916!1.69e-16!49;UBERON:0003929!1.68e-14!55;UBERON:0002368!3.86e-13!60;UBERON:0003104!6.80e-13!61;UBERON:0009142!6.80e-13!61;UBERON:0002530!5.50e-12!65;UBERON:0000490!8.93e-12!66;UBERON:0009569!8.93e-12!66;UBERON:0005911!3.50e-11!69;UBERON:0001041!5.28e-11!80;UBERON:0000949!1.23e-10!72;UBERON:0000466!1.59e-09!79;UBERON:0005177!1.59e-09!79;UBERON:0002100!3.99e-08!90;UBERON:0004921!4.18e-07!114;UBERON:0001007!6.03e-07!116;UBERON:0001555!6.03e-07!116;UBERON:0007026!6.03e-07!116;UBERON:0004119!8.59e-07!118;UBERON:0000925!8.59e-07!118;UBERON:0006595!8.59e-07!118
}}
}}

Revision as of 19:00, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:128397881..128397909,-p@chr10:128397881..128397909
-
Mm9::chr11:102268056..102268066,-p14@Slc25a39
Mm9::chr11:54937428..54937451,+p1@ENSMUST00000121611
Mm9::chr12:105133335..105133377,-p@chr12:105133335..105133377
-
Mm9::chr14:69212351..69212355,+p@chr14:69212351..69212355
+
Mm9::chr16:13189956..13189961,-p@chr16:13189956..13189961
-
Mm9::chr17:46575364..46575373,-p2@Slc22a7
Mm9::chr18:46795982..46795987,-p@chr18:46795982..46795987
-
Mm9::chr19:37772102..37772120,-p@chr19:37772102..37772120
-
Mm9::chr19:37772353..37772360,+p1@Cyp26a1
Mm9::chr1:34293459..34293497,+p@chr1:34293459..34293497
+
Mm9::chr2:30823340..30823350,-p3@Tor1a
Mm9::chr2:30823366..30823376,-p2@Tor1a
Mm9::chr3:62143968..62143980,+p4@Arhgef26
Mm9::chr4:150226831..150226839,+p@chr4:150226831..150226839
+
Mm9::chr4:150229173..150229190,+p1@Errfi1
Mm9::chr4:60595024..60595025,-p1@Mup10
p2@Mup8
Mm9::chr4:63023477..63023485,+p1@Orm2
Mm9::chr5:136116678..136116682,+p@chr5:136116678..136116682
+
Mm9::chr5:140682000..140682011,-p@chr5:140682000..140682011
-
Mm9::chr6:121815744..121815763,+p@chr6:121815744..121815763
+
Mm9::chr7:20277353..20277362,-p@chr7:20277353..20277362
-
Mm9::chr7:27914848..27914882,+p@chr7:27914848..27914882
+
Mm9::chr7:27918335..27918355,+p@chr7:27918335..27918355
+
Mm9::chr7:38000683..38000684,+p@chr7:38000683..38000684
+
Mm9::chr7:87545271..87545285,+p@chr7:87545271..87545285
+
Mm9::chr9:106145626..106145638,-p@chr9:106145626..106145638
-
Mm9::chr9:34935450..34935461,+p@chr9:34935450..34935461
+
Mm9::chr9:46041253..46041286,-p@chr9:46041253..46041286
-
Mm9::chr9:48606435..48606440,+p@chr9:48606435..48606440
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell3.96e-185
endopolyploid cell3.96e-185
parenchymal cell3.96e-185
polyploid cell3.96e-185
hepatocyte3.96e-185

Uber Anatomy
Ontology termp-valuen
liver7.46e-3922
epithelial sac7.46e-3922
digestive gland7.46e-3922
epithelium of foregut-midgut junction7.46e-3922
anatomical boundary7.46e-3922
hepatobiliary system7.46e-3922
foregut-midgut junction7.46e-3922
hepatic diverticulum7.46e-3922
liver primordium7.46e-3922
septum transversum7.46e-3922
liver bud7.46e-3922
digestive tract diverticulum4.29e-3723
sac4.29e-3723
exocrine gland5.37e-3425
exocrine system5.37e-3425
trunk mesenchyme4.00e-1845
epithelial tube2.81e-1747
abdomen element1.69e-1649
abdominal segment element1.69e-1649
abdominal segment of trunk1.69e-1649
abdomen1.69e-1649
gut epithelium1.68e-1455
endocrine gland3.86e-1360
mesenchyme6.80e-1361
entire embryonic mesenchyme6.80e-1361
gland5.50e-1265
unilaminar epithelium8.93e-1266
subdivision of trunk8.93e-1266
endo-epithelium3.50e-1169
foregut5.28e-1180
endocrine system1.23e-1072
immaterial anatomical entity1.59e-0979
trunk region element1.59e-0979
trunk3.99e-0890
subdivision of digestive tract4.18e-07114
digestive system6.03e-07116
digestive tract6.03e-07116
primitive gut6.03e-07116
endoderm-derived structure8.59e-07118
endoderm8.59e-07118
presumptive endoderm8.59e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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