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MCL coexpression mm9:533: Difference between revisions

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|coexpression_dpi_cluster_scores_median=-0.0722895609279355,0.933074315996082,0.944893620788225,0.717127373719558,0.743398607381792,0.734433062493543,0.684095197191255,-0.0564126196336631,-0.118890939905407,-0.118509605692322,-0.167633986156898,-0.186548271529775,-0.126563047279351,-0.126104136822545,-0.0845526319474743,-0.0496658884589061,-0.116819033202404,-0.209260432386091,-0.181516454468235,-0.198242040412256,-0.0273875687654648,-0.0359270138734397,-0.0643797099014911,0.790436049267951,0.867500370988938,0.93518276751672,0.929867636449007,0.883983102939137,0.997263115188783,0.820360216279626,0.942973197699178,-0.395111139424188,-0.281579120456016,-0.331072570950244,0.337582036662941,0.342647899495967,0.267542850924267,0.905759246177874,0.729502475860242,0.785095524848398,0.890949641448604,0.83838772818475,0.831068030392304,0.227108993727134,0.168886428379177,0.225737652902,0.03315063448901,-0.0295297940415639,0.00163561447436765,-0.0474856418010979,0.0203336749338944,-0.101994501894037,-0.181662006870402,-0.236249912333846,-0.217285781510683,0.166576497826616,0.0832565998016981,0.119952133127492,-0.209418540542427,-0.25274999207185,-0.186548271529775,0.134259588735404,0.0699125458623613,0.0465426619705655,-0.0998018312248501,0.0953019593402157,-0.0762857446284537,-0.101376595320672,-0.187995063000989,-0.209418540542427,-0.207902153314066,-0.195278092040459,-0.186548271529775,-0.209418540542427,-0.203290845849368,-0.225297107027587,-0.313849105998147,-0.17084964618837,-0.159475401701576,-0.209418540542427,-0.191955615237788,-0.194920415874915,-0.185124058629173,-0.215452743818362,-0.208299260495101,-0.166257589056823,-0.169061219361334,-0.186548271529775,0.092877040710462,0.170243439291153,0.128133174264522,0.0702342305826454,-0.101376595320672,-0.0265723756835359,0.00733595034745835,-0.0275977172032413,0.119202425489003,0.177961666680311,0.280398915395699,0.169850885005774,-0.109360161731913,0.107632256787371,-0.072727189303731,-0.0988107802675308,0.47519292922667,0.458730774497785,0.435946507791057,0.295308525412246,0.0289262938538743,-0.0151379380307432,-0.0280818770748285,0.0079041645173652,0.0284382118925224,-0.00192339347860195,-0.0133530968442316,-0.00080963013576195,0.35033405840479,0.105475829654683,0.0818202213275522,0.039538580389581,0.0078187381011438,-0.0344458960052125,0.673188992711102,-0.204073461189626,-0.255473560484567,0.695627858081439,0.00572428590760625,0.105086970496537,0.0507901955473201,-0.136803410983265,-0.253009072946394,-0.186548271529775,-0.232563273387408,-0.249269010119634,-0.18469809828156,-0.212033855552732,0.0252916017410633,0.0560085685078767,0.00896443764396935,0.011265798880924,-0.073725148333855,-0.0379185128707014,0.00158361080255898,-0.0434159179701816,-0.0669118885925825,-0.0496693146728956,-0.091794732046591,-0.0789431423750221,-0.0814496627304828,-0.0681580316072498,-0.116186159419523,-0.0715623357874909,0.0543915333189878,0.0223009803228394,0.0972526037479846,-0.0666235716065563,0.0193491437979024,0.0666573542695331,0.022190871615222,-0.0106935056496583,-0.0542974682341622,-0.0124031821784628,-0.0316727049900039,-0.0293125488492948,-0.0581989595155583,-0.0217004747331299,-0.0406173643780901,0.00683816714022505,-0.0805093661510378,-0.0532920051231402,-0.0774515384392685,-0.0810690321476029,-0.0587705489678593,-0.0415259396680722,-0.220307130646196,-0.124639994046022,0.844330732152573,0.618266692215524,-0.0430158896373247,0.0259747470004364,0.169592270416389,0.223136085614248,0.27086842550492,0.324332007962869,0.595638158590224,0.447414058328756,0.43675602481908,0.390587611842283,0.43999195304064,0.696234882539416,0.694881924144749,0.699319454976836,0.0232400278252647,-0.0377602402173176,0.031513864142959,0.0392324513919872,0.0293528345290856,0.0332673749063512,0.075409986277216,0.143230437594356,0.183069959093876,0.190574159301874,-0.00553147173989715,-0.147035137853402,-0.0663739818990585,-0.028571833283765,-0.0710743418551533,-0.108566127777975,0.00990508405719755,-0.0348249180343072,0.0192888001733484,0.071966886773041,-0.0688548263449225,0.00349551449213578,0.0848719472842609,0.0143817426465801,-0.0052579616718517,0.0441353195269485,0.140766177794457,0.0159713064048614,-0.0066897177283578,-0.0128135808948292,0.0439811853108373,0.0530305958431368,0.0510883054593663,0.128080032058894,0.0865031420243411,0.0700505465903078,0.132638530527802,0.136581373782764,0.100767421838137,0.176388019396199,-0.0209569041380714,0.216845944317818,0.172437607510882,0.0815433933365195,-0.208982237040161,-0.186548271529775,0.131717411730239,-0.144744826636382,-0.0348844662658446,0.0136177577753642,-0.0680841307888007,-0.0184354424527264,-0.059863539060501,-0.0434665937027811,-0.0570991098893391,-0.0214007185149508,-0.0488846129078618,-0.246918499462458,0.0929616939684791,-0.00781593014607396,0.0347239598871414,0.11369619230261,-0.114945801340749,-0.0151480396314911,0.00357068509190912,-0.0251026862678191,-0.0431986269567427,0.0460302386508017,0.198022972008317,-0.0284187743427979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|gostat_on_MCL_coexpression=GO:0045454;cell redox homeostasis;0.0416104037996739;22166,52700!
|gostat_on_MCL_coexpression=GO:0045454;cell redox homeostasis;0.0416104037996739;22166,52700!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!4.25e-17!47;UBERON:0000160!4.44e-16!31;UBERON:0000344!2.65e-10!15;UBERON:0004119!1.53e-09!118;UBERON:0000925!1.53e-09!118;UBERON:0006595!1.53e-09!118;UBERON:0001242!4.83e-09!13;UBERON:0000060!4.83e-09!13;UBERON:0001262!4.83e-09!13;UBERON:0004786!4.83e-09!13;UBERON:0001007!7.13e-09!116;UBERON:0001555!7.13e-09!116;UBERON:0007026!7.13e-09!116;UBERON:0004923!1.50e-08!24;UBERON:0004921!4.72e-08!114
}}
}}

Revision as of 20:50, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:72021039..72021122,+p1@Txndc17
Mm9::chr11:97660975..97661023,+p1@Lasp1
Mm9::chr13:55423352..55423414,+p1@LOC100046650
p1@Prelid1
Mm9::chr14:26661709..26661720,+p4@Gm2260
p4@Gm2274
p6@Anxa11
Mm9::chr14:26661724..26661735,+p3@Gm2260
p3@Gm2274
p5@Anxa11
Mm9::chr2:143741277..143741304,+p1@Dstn
Mm9::chr3:108926022..108926085,+p1@Slc25a24
Mm9::chr3:108926094..108926114,+p2@Slc25a24
Mm9::chr3:51465089..51465111,+p1@Mgst2
Mm9::chr4:57969155..57969170,-p1@Txn1
Mm9::chr9:122203461..122203473,-p3@Ano10
Mm9::chr9:92145033..92145112,+p1@Plscr1
Mm9::chrX:19941767..19941792,+p2@Rp2h
Mm9::chrX:19941798..19941809,+p3@Rp2h


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0045454cell redox homeostasis0.0416104037996739



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gastrointestinal system4.25e-1747
intestine4.44e-1631
mucosa2.65e-1015
endoderm-derived structure1.53e-09118
endoderm1.53e-09118
presumptive endoderm1.53e-09118
intestinal mucosa4.83e-0913
anatomical wall4.83e-0913
wall of intestine4.83e-0913
gastrointestinal system mucosa4.83e-0913
digestive system7.13e-09116
digestive tract7.13e-09116
primitive gut7.13e-09116
organ component layer1.50e-0824
subdivision of digestive tract4.72e-08114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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