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MCL coexpression mm9:913: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0005831;steroid hormone aporeceptor complex;0.0468964005916836;24068!
|gostat_on_MCL_coexpression=GO:0005831;steroid hormone aporeceptor complex;0.0468964005916836;24068!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!3.94e-11!31;UBERON:0005256!2.61e-09!45;UBERON:0000344!6.36e-09!15;UBERON:0001242!9.84e-08!13;UBERON:0000060!9.84e-08!13;UBERON:0001262!9.84e-08!13;UBERON:0004786!9.84e-08!13;UBERON:0005409!1.01e-07!47;UBERON:0002100!2.29e-07!90;UBERON:0003104!2.38e-07!61;UBERON:0009142!2.38e-07!61
}}
}}

Revision as of 21:27, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:69476071..69476098,-p1@Mpdu1
Mm9::chr13:55463948..55463991,-p1@Lman2
Mm9::chr18:36829923..36829971,-p1@Sra1
Mm9::chr2:26788875..26788916,-p2@Surf4
Mm9::chr4:106986968..106987002,+p1@Yipf1
Mm9::chr4:154460380..154460488,-p1@Rer1
Mm9::chr4:155205725..155205737,+p3@Aurkaip1
Mm9::chr7:148358708..148358761,-p1@Rnh1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005831steroid hormone aporeceptor complex0.0468964005916836



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine3.94e-1131
trunk mesenchyme2.61e-0945
mucosa6.36e-0915
intestinal mucosa9.84e-0813
anatomical wall9.84e-0813
wall of intestine9.84e-0813
gastrointestinal system mucosa9.84e-0813
gastrointestinal system1.01e-0747
trunk2.29e-0790
mesenchyme2.38e-0761
entire embryonic mesenchyme2.38e-0761


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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