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|gostat_on_MCL_coexpression=GO:0004602;glutathione peroxidase activity;0.037899835520948;14776!GO:0008430;selenium binding;0.037899835520948;14776!GO:0004601;peroxidase activity;0.037899835520948;14776!GO:0016684;oxidoreductase activity, acting on peroxide as acceptor;0.037899835520948;14776!GO:0006979;response to oxidative stress;0.0413180817439719;14776!
|gostat_on_MCL_coexpression=GO:0004602;glutathione peroxidase activity;0.037899835520948;14776!GO:0008430;selenium binding;0.037899835520948;14776!GO:0004601;peroxidase activity;0.037899835520948;14776!GO:0016684;oxidoreductase activity, acting on peroxide as acceptor;0.037899835520948;14776!GO:0006979;response to oxidative stress;0.0413180817439719;14776!
|ontology_enrichment_celltype=CL:0002563!2.56e-08!9;CL:0002251!2.56e-08!9;CL:0000066!6.06e-08!25;CL:0002076!1.36e-07!15
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!5.63e-23!31;UBERON:0005409!6.53e-23!47;UBERON:0001007!5.09e-16!116;UBERON:0001555!5.09e-16!116;UBERON:0007026!5.09e-16!116;UBERON:0004119!6.80e-16!118;UBERON:0000925!6.80e-16!118;UBERON:0006595!6.80e-16!118;UBERON:0004921!1.03e-14!114;UBERON:0000344!3.66e-13!15;UBERON:0001242!1.75e-11!13;UBERON:0000060!1.75e-11!13;UBERON:0001262!1.75e-11!13;UBERON:0004786!1.75e-11!13;UBERON:0000485!8.26e-09!11;UBERON:0005178!1.45e-08!17;UBERON:0005181!1.45e-08!17;UBERON:0002224!1.45e-08!17;UBERON:0000915!1.45e-08!17;UBERON:0008947!1.45e-08!17;UBERON:0003258!1.45e-08!17;UBERON:0003350!2.56e-08!9;UBERON:0004808!2.56e-08!9;UBERON:0001277!2.56e-08!9;UBERON:0004923!3.55e-07!24;UBERON:0005153!4.20e-07!17
}}
}}

Revision as of 16:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:69779098..69779123,+p4@Cldn7
Mm9::chr12:77896412..77896451,-p1@Gpx2
Mm9::chr12:77896458..77896465,-p3@Gpx2
Mm9::chr12:77896476..77896508,-p2@Gpx2
Mm9::chr5:31554051..31554101,+p1@Krtcap3
Mm9::chr5:31554116..31554131,+p2@Krtcap3
Mm9::chr5:31554284..31554295,+p3@Krtcap3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004602glutathione peroxidase activity0.037899835520948
GO:0008430selenium binding0.037899835520948
GO:0004601peroxidase activity0.037899835520948
GO:0016684oxidoreductase activity, acting on peroxide as acceptor0.037899835520948
GO:0006979response to oxidative stress0.0413180817439719



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
intestinal epithelial cell2.56e-089
epithelial cell of alimentary canal2.56e-089
epithelial cell6.06e-0825
endo-epithelial cell1.36e-0715

Uber Anatomy
Ontology termp-valuen
intestine5.63e-2331
gastrointestinal system6.53e-2347
digestive system5.09e-16116
digestive tract5.09e-16116
primitive gut5.09e-16116
endoderm-derived structure6.80e-16118
endoderm6.80e-16118
presumptive endoderm6.80e-16118
subdivision of digestive tract1.03e-14114
mucosa3.66e-1315
intestinal mucosa1.75e-1113
anatomical wall1.75e-1113
wall of intestine1.75e-1113
gastrointestinal system mucosa1.75e-1113
simple columnar epithelium8.26e-0911
thoracic cavity element1.45e-0817
thoracic segment organ1.45e-0817
thoracic cavity1.45e-0817
thoracic segment of trunk1.45e-0817
respiratory primordium1.45e-0817
endoderm of foregut1.45e-0817
epithelium of mucosa2.56e-089
gastrointestinal system epithelium2.56e-089
intestinal epithelium2.56e-089
organ component layer3.55e-0724
epithelial bud4.20e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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