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MCL coexpression mm9:3581: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002365!1.37e-11!25;UBERON:0002330!1.37e-11!25;UBERON:0009854!3.78e-10!23;UBERON:0009856!3.78e-10!23;UBERON:0002107!7.84e-10!22;UBERON:0007499!7.84e-10!22;UBERON:0006925!7.84e-10!22;UBERON:0009497!7.84e-10!22;UBERON:0000015!7.84e-10!22;UBERON:0002423!7.84e-10!22;UBERON:0006235!7.84e-10!22;UBERON:0008835!7.84e-10!22;UBERON:0003894!7.84e-10!22;UBERON:0004161!7.84e-10!22;UBERON:0008836!7.84e-10!22;UBERON:0005177!1.06e-09!79;UBERON:0005172!1.22e-07!49;UBERON:0005173!1.22e-07!49;UBERON:0002417!1.22e-07!49;UBERON:0000916!1.22e-07!49;UBERON:0003914!3.47e-07!47;UBERON:0002100!4.40e-07!90;UBERON:0004111!4.98e-07!122;UBERON:0009569!5.32e-07!66;UBERON:0000025!9.17e-07!114
}}
}}

Revision as of 20:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:88674444..88674455,+p5@Mgll
Mm9::chr6:88674456..88674472,+p1@Mgll
Mm9::chr6:88674483..88674496,+p3@Mgll


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
exocrine gland1.37e-1125
exocrine system1.37e-1125
digestive tract diverticulum3.78e-1023
sac3.78e-1023
liver7.84e-1022
epithelial sac7.84e-1022
digestive gland7.84e-1022
epithelium of foregut-midgut junction7.84e-1022
anatomical boundary7.84e-1022
hepatobiliary system7.84e-1022
foregut-midgut junction7.84e-1022
hepatic diverticulum7.84e-1022
liver primordium7.84e-1022
septum transversum7.84e-1022
liver bud7.84e-1022
trunk region element1.06e-0979
abdomen element1.22e-0749
abdominal segment element1.22e-0749
abdominal segment of trunk1.22e-0749
abdomen1.22e-0749
epithelial tube3.47e-0747
trunk4.40e-0790
anatomical conduit4.98e-07122
subdivision of trunk5.32e-0766
tube9.17e-07114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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