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MCL coexpression mm9:2922: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007100!3.31e-18!18;UBERON:0000948!3.31e-18!18;UBERON:0005498!3.31e-18!18;UBERON:0004140!3.31e-18!18;UBERON:0009881!3.31e-18!18;UBERON:0004141!3.31e-18!18;UBERON:0003084!3.31e-18!18;UBERON:0007005!3.31e-18!18;UBERON:0004139!3.31e-18!18;UBERON:0004291!3.31e-18!18;UBERON:0003914!1.85e-15!47;UBERON:0004535!8.20e-15!23;UBERON:0001009!8.20e-15!23;UBERON:0004872!4.23e-11!33;UBERON:0000991!1.33e-09!18;UBERON:0005564!1.33e-09!18;UBERON:0004176!8.94e-09!17;UBERON:0009196!8.94e-09!17;UBERON:0009117!8.94e-09!17;UBERON:0000473!3.29e-08!14;UBERON:0003133!3.75e-08!24;UBERON:0001048!1.33e-07!134;UBERON:0003135!1.88e-07!15;UBERON:0000466!2.81e-07!79;UBERON:0005156!3.57e-07!26;UBERON:0000990!3.57e-07!26;UBERON:0003101!8.57e-07!16;UBERON:0000079!8.57e-07!16
|ontology_enrichment_uberon=UBERON:0007100!3.31e-18!18;UBERON:0000948!3.31e-18!18;UBERON:0005498!3.31e-18!18;UBERON:0004140!3.31e-18!18;UBERON:0009881!3.31e-18!18;UBERON:0004141!3.31e-18!18;UBERON:0003084!3.31e-18!18;UBERON:0007005!3.31e-18!18;UBERON:0004139!3.31e-18!18;UBERON:0004291!3.31e-18!18;UBERON:0003914!1.85e-15!47;UBERON:0004535!8.20e-15!23;UBERON:0001009!8.20e-15!23;UBERON:0004872!4.23e-11!33;UBERON:0000991!1.33e-09!18;UBERON:0005564!1.33e-09!18;UBERON:0004176!8.94e-09!17;UBERON:0009196!8.94e-09!17;UBERON:0009117!8.94e-09!17;UBERON:0000473!3.29e-08!14;UBERON:0003133!3.75e-08!24;UBERON:0001048!1.33e-07!134;UBERON:0003135!1.88e-07!15;UBERON:0000466!2.81e-07!79;UBERON:0005156!3.57e-07!26;UBERON:0000990!3.57e-07!26;UBERON:0003101!8.57e-07!16;UBERON:0000079!8.57e-07!16
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,0.411696,1.47967,0.872889,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.261619,1.48356,0.156582,0.788421,1.05665,0.859154,0.235354,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,1.63704,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,0.568545,1.75916,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,1.88801,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,1.75703,1.11251,0.94678,0.562367,0.904334,0.135528
}}
}}

Revision as of 22:08, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:63866880..63866900,+p@chr14:63866880..63866900
+
Mm9::chr14:63989446..63989459,+p@chr14:63989446..63989459
+
Mm9::chr16:77500787..77500808,+p9@2810055G20Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
primary circulatory organ3.31e-1818
heart3.31e-1818
primitive heart tube3.31e-1818
primary heart field3.31e-1818
anterior lateral plate mesoderm3.31e-1818
heart tube3.31e-1818
heart primordium3.31e-1818
cardiac mesoderm3.31e-1818
cardiogenic plate3.31e-1818
heart rudiment3.31e-1818
epithelial tube1.85e-1547
cardiovascular system8.20e-1523
circulatory system8.20e-1523
splanchnic layer of lateral plate mesoderm4.23e-1133
gonad1.33e-0918
gonad primordium1.33e-0918
external genitalia8.94e-0917
indifferent external genitalia8.94e-0917
indifferent gonad8.94e-0917
testis3.29e-0814
reproductive organ3.75e-0824
primordium1.33e-07134
male reproductive organ1.88e-0715
immaterial anatomical entity2.81e-0779
reproductive structure3.57e-0726
reproductive system3.57e-0726
male organism8.57e-0716
male reproductive system8.57e-0716


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}