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MCL coexpression mm9:3391: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001894!1.07e-09!10;UBERON:0006222!1.07e-09!10;UBERON:0000007!1.68e-09!8;UBERON:0003296!1.68e-09!8;UBERON:0010133!1.68e-09!8;UBERON:0000970!6.76e-09!9;UBERON:0000019!6.76e-09!9;UBERON:0000047!6.76e-09!9;UBERON:0010312!6.76e-09!9;UBERON:0004088!6.76e-09!9;UBERON:0002104!6.76e-09!9;UBERON:0001456!6.76e-09!9;UBERON:0003072!6.76e-09!9;UBERON:0004128!6.76e-09!9;UBERON:0003071!6.76e-09!9;UBERON:0001444!3.41e-08!11;UBERON:0000020!3.02e-07!12;UBERON:0001032!3.02e-07!12;UBERON:0004456!3.02e-07!12;UBERON:0003056!5.82e-07!49
|ontology_enrichment_uberon=UBERON:0001894!1.07e-09!10;UBERON:0006222!1.07e-09!10;UBERON:0000007!1.68e-09!8;UBERON:0003296!1.68e-09!8;UBERON:0010133!1.68e-09!8;UBERON:0000970!6.76e-09!9;UBERON:0000019!6.76e-09!9;UBERON:0000047!6.76e-09!9;UBERON:0010312!6.76e-09!9;UBERON:0004088!6.76e-09!9;UBERON:0002104!6.76e-09!9;UBERON:0001456!6.76e-09!9;UBERON:0003072!6.76e-09!9;UBERON:0004128!6.76e-09!9;UBERON:0003071!6.76e-09!9;UBERON:0001444!3.41e-08!11;UBERON:0000020!3.02e-07!12;UBERON:0001032!3.02e-07!12;UBERON:0004456!3.02e-07!12;UBERON:0003056!5.82e-07!49
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,1.23467,0.870507,0.906098,1.18012,0.933025,1.47843,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,1.1146,0.841386,0.64294,0.380786,0.825437,1.24901,4.74001,1.05917,1.47967,0.144706,0.563758,0.902078,1.32715,0.50014,0.582863,0.831295,0.724277,0.610669,0.156582,3.087,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.971403,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,4.06877,3.07846,0.284975,1.44925,0.416814,0.402065,1.86424,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,1.16164,1.32978,0.181575,0.195254,1.75916,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,2.26459,1.26911,1.17262,1.26539,1.05692,1.65883,0.563856,1.24872,1.37854,1.12409,1.12297,1.94011,1.18646,0.854628,2.77583,2.74838,2.94913,1.38039,0.685481,0.876299,1.63327,0.580657,3.34241,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.751419,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,2.40807,2.40374,0.765221,0.589976,1.77018,2.0485,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.135528
}}
}}

Revision as of 22:50, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:128902824..128902831,+p14@Pitx2
Mm9::chr3:128902837..128902861,+p3@Pitx2
Mm9::chr3:128902878..128902893,+p6@Pitx2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
diencephalon1.07e-0910
future diencephalon1.07e-0910
pituitary gland1.68e-098
gland of diencephalon1.68e-098
neuroendocrine gland1.68e-098
eye6.76e-099
camera-type eye6.76e-099
simple eye6.76e-099
immature eye6.76e-099
ocular region6.76e-099
visual system6.76e-099
face6.76e-099
optic cup6.76e-099
optic vesicle6.76e-099
eye primordium6.76e-099
subdivision of head3.41e-0811
sense organ3.02e-0712
sensory system3.02e-0712
entire sense organ system3.02e-0712
pre-chordal neural plate5.82e-0749


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}