FFCP PHASE1:Mm9::chr3:105604241..105604295,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|id=chr3:105604241..105604295,- | |id=chr3:105604241..105604295,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!8.50e-13!128;UBERON:0001555!8.50e-13!128;UBERON:0007026!8.50e-13!128;UBERON:0004119!9.09e-13!130;UBERON:0000925!9.09e-13!130;UBERON:0006595!9.09e-13!130;UBERON:0004921!9.44e-13!126;UBERON:0004185!9.44e-13!126;UBERON:0003104!1.74e-11!131;UBERON:0009142!1.74e-11!131;UBERON:0000077!5.14e-10!97;UBERON:0001041!1.29e-09!92;UBERON:0005911!1.28e-08!69;UBERON:0005057!2.77e-08!51;UBERON:0002405!1.01e-07!70;UBERON:0000926!1.77e-07!193;UBERON:0004120!1.77e-07!193;UBERON:0006603!1.77e-07!193;UBERON:0009569!2.02e-07!66;UBERON:0005172!7.91e-07!49;UBERON:0005173!7.91e-07!49;UBERON:0002417!7.91e-07!49;UBERON:0000916!7.91e-07!49 | |ontology_enrichment_uberon=UBERON:0001007!8.50e-13!128;UBERON:0001555!8.50e-13!128;UBERON:0007026!8.50e-13!128;UBERON:0004119!9.09e-13!130;UBERON:0000925!9.09e-13!130;UBERON:0006595!9.09e-13!130;UBERON:0004921!9.44e-13!126;UBERON:0004185!9.44e-13!126;UBERON:0003104!1.74e-11!131;UBERON:0009142!1.74e-11!131;UBERON:0000077!5.14e-10!97;UBERON:0001041!1.29e-09!92;UBERON:0005911!1.28e-08!69;UBERON:0005057!2.77e-08!51;UBERON:0002405!1.01e-07!70;UBERON:0000926!1.77e-07!193;UBERON:0004120!1.77e-07!193;UBERON:0006603!1.77e-07!193;UBERON:0009569!2.02e-07!66;UBERON:0005172!7.91e-07!49;UBERON:0005173!7.91e-07!49;UBERON:0002417!7.91e-07!49;UBERON:0000916!7.91e-07!49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.32e-13,116;UBERON:0001555,8.32e-13,116;UBERON:0007026,8.32e-13,116;UBERON:0004921,8.86e-13,114;UBERON:0004119,9.31e-13,118;UBERON:0000925,9.31e-13,118;UBERON:0006595,9.31e-13,118;UBERON:0001041,7.31e-10,80;UBERON:0005911,1.28e-08,69;UBERON:0005177,1.62e-07,79;UBERON:0002100,1.82e-07,90;UBERON:0009569,2.02e-07,66;UBERON:0005256,6.42e-07,45;UBERON:0005172,7.91e-07,49;UBERON:0005173,7.91e-07,49;UBERON:0002417,7.91e-07,49;UBERON:0000916,7.91e-07,49 | |||
|phase1_expression=41.6387002472464,78.8684421264956,73.7098767811048,75.9185170380143,69.6245064625423,53.385608467981,47.4233660408917,56.9433856377351,118.684892773855,121.479489161115,58.7277631013482,56.6382328866888,57.3522445269539,59.9703960594322,78.2807940266807,83.2173348972185,116.127271769272,60.7264668314608,67.186072466812,57.7169926445321,38.0143506975282,57.5887516965135,48.8443605689809,59.0372040107671,48.8641768673072,76.9470831914127,83.1370652587014,65.934197201882,81.9000937856972,76.1130991874991,70.2885718777316,13.9706748161119,15.9916844771988,15.8481681015439,30.0405684541326,38.5664377231702,26.9503550266327,184.572449154976,217.99256112214,215.691782517205,192.351696586142,198.766236122908,248.095790398919,33.8662440354303,34.5695335458545,29.1839335937074,19.559783608701,20.2763395433815,24.8245386489953,28.1923353657711,34.8566189847153,17.2503077237966,67.2808250291523,73.9869384851571,66.8826660293503,48.364773974758,47.5645510298336,51.0515371354668,17.601532094785,12.1667925232568,12.0427966666174,16.6033820713875,19.5644855144451,23.8473425079571,13.8441290759376,15.6305625288142,12.583204641773,13.4476406862544,25.403955015577,20.9259204414121,24.1873705554089,35.9920240348793,32.9094126017904,23.885705846916,18.2106394934649,17.4651569455904,37.4393995397922,48.1381264581158,42.5490097119794,21.761237475482,18.5719916512892,21.8783615633839,35.4562408731754,35.4540444319958,40.3387374130779,43.3104020646292,39.5793272621506,34.4838974776806,53.084061526562,57.5855288013706,42.0303508617433,65.3922146505854,59.1575060325743,71.2408212961919,67.5767474145576,80.6448396775204,59.2675452955993,58.968891612008,45.2027648008992,48.0541821334063,52.9571258360319,19.2489716121477,17.8363667794652,0,29.6592726185363,25.589346412985,36.3977600410644,73.5344185390746,121.441867430524,75.2601645058662,46.3205822465583,51.1502003564397,60.1906447838313,67.9759108892328,64.9089663389091,94.3756100885863,46.4726539340623,67.094101610839,87.5764446430376,75.8686526253349,84.8031430887911,88.2472960706104,54.0536107532554,37.7687228144896,39.3759808809296,61.3096932500619,55.1149572727233,61.789981292321,53.6236358248333,46.7346794943047,34.312545211397,34.8062555352634,39.1104720432622,47.3073596061111,39.687516510876,48.185655131124,53.5675053852664,76.1370660133769,37.6556910066175,70.4980217219688,23.5518001762494,35.8647282916218,33.6716182736003,35.7170418270645,39.5292060069215,37.537320043461,42.6342846746766,52.5167842600202,19.8322553498215,30.0678667466833,24.9850596312807,28.2762494831572,33.6437171562973,44.9245294813595,46.9183271010111,40.8020246977911,89.8832879760941,56.1018437510079,59.95849837247,33.9686266958223,45.0290035163705,45.3756394881757,41.667073462997,45.2557733019029,50.4453459141727,50.9249339003393,43.4602910267383,59.5503246072564,60.8871444679878,75.0245310841465,72.3944469244492,77.6321933228515,87.8200461164203,78.1081357185364,50.4695876553905,44.4547925478509,76.3267388692573,59.2369269326339,32.2065258308203,44.5894409972042,41.366455084392,45.3787930402521,52.2588403035445,55.5458828248673,69.2812429854987,55.9976446061637,71.3791992992765,61.2785933886745,66.2877896205008,55.7268033365617,76.0805935558924,80.6522156680187,14.2250925714811,42.8431922286483,37.1935527721165,41.9521735361347,41.5058322538719,41.3801337352879,60.7703121764113,55.2061953443712,67.038456788267,61.9453762887439,75.8918725343101,50.8877572434087,64.6679093922438,75.5536697613109,75.6668252779116,82.4825886353266,85.8089120503385,55.5253545280065,60.8007100406383,71.1114060157131,96.3246983733275,74.0560485860322,70.8325517970053,81.8355564548642,72.1177602358087,92.1467125804031,89.9748036111365,34.6769283539987,39.1115943460862,44.3034673873241,47.1727399059889,59.96724016417,51.417426431379,65.7600393280782,101.674667948493,87.4785524112661,90.0919442914802,100.284348606032,110.345703412307,111.813722283508,54.284862218138,52.2149456465961,58.5199484892653,56.2910962461654,56.0321559057394,72.3196106273894,46.2296545962225,78.0135165061512,61.5241027861701,57.0040566673092,59.6722811719853,77.6648593345794,80.2075226696619,76.1475867821959,61.9360373562588,57.2821481506171,61.6648933596577,53.33933852602,48.4015690560196,25.4633813244175,46.9114442938299,45.3667838174472,50.4431525691859,38.844901784797,44.7438864307832,53.752447730431,24.8053590019849,56.5680672216827,63.5733601193824,68.344341141771,65.5955176227887,58.7828369760618,61.1427929734993,52.5991270565753,35.405718998394,29.8901416091975,14.6175312674513,32.579229324802,36.0000674293815,29.7875925395458,39.491764944509,14.0053876592716,45.2916396562961,59.9484760544611,104.530460678052,35.9452031412427,52.6374031028652,50.7231698645791,44.2871396251636,41.3635067357554,69.6639199545343,63.7863038916153,92.9537591540319,43.5476291402399,67.2256134352053,107.181652035669,87.6209999691771,121.938766319077,39.4349957585744,52.3418431690481,51.5485902290501,98.3310736555567,25.623215480072,51.8464641173464,58.4308893845945,53.3175154836895,55.6824537552753,76.1983557074237,72.4044272153943,85.5941930287777,71.1586203371943,52.1925022993018,14.6560164057889,39.4723681556104,33.2571565818766,42.3903590590024,34.3565130450765,42.0700752472038,42.7180348670544,44.9205127711628,38.3785200598102,28.9900944991207,35.4276907697175,83.1109247252109,40.1395926274525,46.0145088098426,52.4880124830292,51.3806616565672,57.4189115317856,60.2179202095044,66.7556662829089,63.9117628171774,68.3575055695349,70.6791557809252,64.9069485726751,71.1005509722035,66.0354497325865,47.159919791964,24.4184548711471,18.1221990351141,38.445577147374,78.2417855830371,65.5011839324625,48.5351804308252,37.5144663388365,69.7185224609155,44.6153955667483,46.4928488872249,37.2382083735608,31.9646919159259,28.773465830367,33.2373314851468,35.1011700120539,34.2244114450408,24.9228324941313,36.2432218226274,34.4573993979467,29.5278406316763,34.6589219680892,50.5661971502052,55.5474880964153,43.5709115026533,45.5605791993311,50.684624080768,50.7052351155068,50.5394423527595,47.9075876792553,55.0788916847343,49.9109234814473,52.3725746671831,54.6211309767882,49.0582502021566,50.4096817860121,57.8727661391115,51.9228235012166,46.662057682604,45.2587413148748,47.9184676630211,47.9256741794115,44.9120427393895,51.7601592284318,55.8456412085065,49.5734806485214,54.9815696905092,52.5561920583485,44.3302394609613,55.0466484096168,52.4043846237998,46.2431078781749,54.2278944150881,44.5614271366437,21.2338991247254,47.7220481228633,47.7013739987222,51.0739846623812,56.2508118754765,80.9218746315271 | |phase1_expression=41.6387002472464,78.8684421264956,73.7098767811048,75.9185170380143,69.6245064625423,53.385608467981,47.4233660408917,56.9433856377351,118.684892773855,121.479489161115,58.7277631013482,56.6382328866888,57.3522445269539,59.9703960594322,78.2807940266807,83.2173348972185,116.127271769272,60.7264668314608,67.186072466812,57.7169926445321,38.0143506975282,57.5887516965135,48.8443605689809,59.0372040107671,48.8641768673072,76.9470831914127,83.1370652587014,65.934197201882,81.9000937856972,76.1130991874991,70.2885718777316,13.9706748161119,15.9916844771988,15.8481681015439,30.0405684541326,38.5664377231702,26.9503550266327,184.572449154976,217.99256112214,215.691782517205,192.351696586142,198.766236122908,248.095790398919,33.8662440354303,34.5695335458545,29.1839335937074,19.559783608701,20.2763395433815,24.8245386489953,28.1923353657711,34.8566189847153,17.2503077237966,67.2808250291523,73.9869384851571,66.8826660293503,48.364773974758,47.5645510298336,51.0515371354668,17.601532094785,12.1667925232568,12.0427966666174,16.6033820713875,19.5644855144451,23.8473425079571,13.8441290759376,15.6305625288142,12.583204641773,13.4476406862544,25.403955015577,20.9259204414121,24.1873705554089,35.9920240348793,32.9094126017904,23.885705846916,18.2106394934649,17.4651569455904,37.4393995397922,48.1381264581158,42.5490097119794,21.761237475482,18.5719916512892,21.8783615633839,35.4562408731754,35.4540444319958,40.3387374130779,43.3104020646292,39.5793272621506,34.4838974776806,53.084061526562,57.5855288013706,42.0303508617433,65.3922146505854,59.1575060325743,71.2408212961919,67.5767474145576,80.6448396775204,59.2675452955993,58.968891612008,45.2027648008992,48.0541821334063,52.9571258360319,19.2489716121477,17.8363667794652,0,29.6592726185363,25.589346412985,36.3977600410644,73.5344185390746,121.441867430524,75.2601645058662,46.3205822465583,51.1502003564397,60.1906447838313,67.9759108892328,64.9089663389091,94.3756100885863,46.4726539340623,67.094101610839,87.5764446430376,75.8686526253349,84.8031430887911,88.2472960706104,54.0536107532554,37.7687228144896,39.3759808809296,61.3096932500619,55.1149572727233,61.789981292321,53.6236358248333,46.7346794943047,34.312545211397,34.8062555352634,39.1104720432622,47.3073596061111,39.687516510876,48.185655131124,53.5675053852664,76.1370660133769,37.6556910066175,70.4980217219688,23.5518001762494,35.8647282916218,33.6716182736003,35.7170418270645,39.5292060069215,37.537320043461,42.6342846746766,52.5167842600202,19.8322553498215,30.0678667466833,24.9850596312807,28.2762494831572,33.6437171562973,44.9245294813595,46.9183271010111,40.8020246977911,89.8832879760941,56.1018437510079,59.95849837247,33.9686266958223,45.0290035163705,45.3756394881757,41.667073462997,45.2557733019029,50.4453459141727,50.9249339003393,43.4602910267383,59.5503246072564,60.8871444679878,75.0245310841465,72.3944469244492,77.6321933228515,87.8200461164203,78.1081357185364,50.4695876553905,44.4547925478509,76.3267388692573,59.2369269326339,32.2065258308203,44.5894409972042,41.366455084392,45.3787930402521,52.2588403035445,55.5458828248673,69.2812429854987,55.9976446061637,71.3791992992765,61.2785933886745,66.2877896205008,55.7268033365617,76.0805935558924,80.6522156680187,14.2250925714811,42.8431922286483,37.1935527721165,41.9521735361347,41.5058322538719,41.3801337352879,60.7703121764113,55.2061953443712,67.038456788267,61.9453762887439,75.8918725343101,50.8877572434087,64.6679093922438,75.5536697613109,75.6668252779116,82.4825886353266,85.8089120503385,55.5253545280065,60.8007100406383,71.1114060157131,96.3246983733275,74.0560485860322,70.8325517970053,81.8355564548642,72.1177602358087,92.1467125804031,89.9748036111365,34.6769283539987,39.1115943460862,44.3034673873241,47.1727399059889,59.96724016417,51.417426431379,65.7600393280782,101.674667948493,87.4785524112661,90.0919442914802,100.284348606032,110.345703412307,111.813722283508,54.284862218138,52.2149456465961,58.5199484892653,56.2910962461654,56.0321559057394,72.3196106273894,46.2296545962225,78.0135165061512,61.5241027861701,57.0040566673092,59.6722811719853,77.6648593345794,80.2075226696619,76.1475867821959,61.9360373562588,57.2821481506171,61.6648933596577,53.33933852602,48.4015690560196,25.4633813244175,46.9114442938299,45.3667838174472,50.4431525691859,38.844901784797,44.7438864307832,53.752447730431,24.8053590019849,56.5680672216827,63.5733601193824,68.344341141771,65.5955176227887,58.7828369760618,61.1427929734993,52.5991270565753,35.405718998394,29.8901416091975,14.6175312674513,32.579229324802,36.0000674293815,29.7875925395458,39.491764944509,14.0053876592716,45.2916396562961,59.9484760544611,104.530460678052,35.9452031412427,52.6374031028652,50.7231698645791,44.2871396251636,41.3635067357554,69.6639199545343,63.7863038916153,92.9537591540319,43.5476291402399,67.2256134352053,107.181652035669,87.6209999691771,121.938766319077,39.4349957585744,52.3418431690481,51.5485902290501,98.3310736555567,25.623215480072,51.8464641173464,58.4308893845945,53.3175154836895,55.6824537552753,76.1983557074237,72.4044272153943,85.5941930287777,71.1586203371943,52.1925022993018,14.6560164057889,39.4723681556104,33.2571565818766,42.3903590590024,34.3565130450765,42.0700752472038,42.7180348670544,44.9205127711628,38.3785200598102,28.9900944991207,35.4276907697175,83.1109247252109,40.1395926274525,46.0145088098426,52.4880124830292,51.3806616565672,57.4189115317856,60.2179202095044,66.7556662829089,63.9117628171774,68.3575055695349,70.6791557809252,64.9069485726751,71.1005509722035,66.0354497325865,47.159919791964,24.4184548711471,18.1221990351141,38.445577147374,78.2417855830371,65.5011839324625,48.5351804308252,37.5144663388365,69.7185224609155,44.6153955667483,46.4928488872249,37.2382083735608,31.9646919159259,28.773465830367,33.2373314851468,35.1011700120539,34.2244114450408,24.9228324941313,36.2432218226274,34.4573993979467,29.5278406316763,34.6589219680892,50.5661971502052,55.5474880964153,43.5709115026533,45.5605791993311,50.684624080768,50.7052351155068,50.5394423527595,47.9075876792553,55.0788916847343,49.9109234814473,52.3725746671831,54.6211309767882,49.0582502021566,50.4096817860121,57.8727661391115,51.9228235012166,46.662057682604,45.2587413148748,47.9184676630211,47.9256741794115,44.9120427393895,51.7601592284318,55.8456412085065,49.5734806485214,54.9815696905092,52.5561920583485,44.3302394609613,55.0466484096168,52.4043846237998,46.2431078781749,54.2278944150881,44.5614271366437,21.2338991247254,47.7220481228633,47.7013739987222,51.0739846623812,56.2508118754765,80.9218746315271 | ||
|short_description=p1@Rap1a | |short_description=p1@Rap1a | ||
}} | }} |
Revision as of 02:04, 15 November 2012
Short description: | p1@Rap1a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rap1a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1162 |
Association with transcript: | 0bp_to_ENSMUST00000090678, NM_145541, uc008qve.1_5end |
EntrezGene: | Rap1a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
digestive system | 8.32e-13 | 116 |
digestive tract | 8.32e-13 | 116 |
primitive gut | 8.32e-13 | 116 |
subdivision of digestive tract | 8.86e-13 | 114 |
endoderm-derived structure | 9.31e-13 | 118 |
endoderm | 9.31e-13 | 118 |
presumptive endoderm | 9.31e-13 | 118 |
foregut | 7.31e-10 | 80 |
endo-epithelium | 1.28e-08 | 69 |
trunk region element | 1.62e-07 | 79 |
trunk | 1.82e-07 | 90 |
subdivision of trunk | 2.02e-07 | 66 |
trunk mesenchyme | 6.42e-07 | 45 |
abdomen element | 7.91e-07 | 49 |
abdominal segment element | 7.91e-07 | 49 |
abdominal segment of trunk | 7.91e-07 | 49 |
abdomen | 7.91e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.