Coexpression cluster:C2756: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=CHD2#1106;4:10.3440228341169:8.73193255208051e-05:0.00129226909991035!CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00818869764442793!E2F1#1869;4:4.90738921487932:0.00172402235736179:0.0106674074874405!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00998406935489968!FOS#2353;4:8.9979553088944:0.000152514771116863:0.00195178166654504!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.018643664847354!MAFF#23764;2:28.1576782449726:0.00184687618036715:0.0109271414797963!MAX#4149;4:6.45255550900712:0.000576761319564549:0.00486090828389299!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00888822036799755!NFYA#4800;4:18.4255806998305:8.67100748407158e-06:0.000234913450228003!NFYB#4801;4:16.7597932535365:1.26678572070404e-05:0.000311738534129617!NRF1#4899;4:12.2102794477109:4.49717228915276e-05:0.000794855604513158!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00444609218541294!RFX5#5993;4:12.0479108271951:4.74457429336527e-05:0.000827657582469977!SETDB1#9869;4:40.3200261780105:3.77887289069054e-07:1.8528718583607e-05!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00685271169981605!SP2#6668;4:26.1535304938446:2.13562021071447e-06:7.75528648076526e-05!SRF#6722;4:13.7971782621678:2.75840773062708e-05:0.000585182500465084!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.032294462586153!TCF7L2#6934;4:10.7701765631373:7.42969445082454e-05:0.00115623581992201!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106992447366467!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00249562121306363 | |tf_chipseq_enrich=CHD2#1106;4:10.3440228341169:8.73193255208051e-05:0.00129226909991035!CTCF#10664;4:5.36025637307503:0.00121114538164362:0.00818869764442793!E2F1#1869;4:4.90738921487932:0.00172402235736179:0.0106674074874405!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00998406935489968!FOS#2353;4:8.9979553088944:0.000152514771116863:0.00195178166654504!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.018643664847354!MAFF#23764;2:28.1576782449726:0.00184687618036715:0.0109271414797963!MAX#4149;4:6.45255550900712:0.000576761319564549:0.00486090828389299!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00888822036799755!NFYA#4800;4:18.4255806998305:8.67100748407158e-06:0.000234913450228003!NFYB#4801;4:16.7597932535365:1.26678572070404e-05:0.000311738534129617!NRF1#4899;4:12.2102794477109:4.49717228915276e-05:0.000794855604513158!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00444609218541294!RFX5#5993;4:12.0479108271951:4.74457429336527e-05:0.000827657582469977!SETDB1#9869;4:40.3200261780105:3.77887289069054e-07:1.8528718583607e-05!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00685271169981605!SP2#6668;4:26.1535304938446:2.13562021071447e-06:7.75528648076526e-05!SRF#6722;4:13.7971782621678:2.75840773062708e-05:0.000585182500465084!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.032294462586153!TCF7L2#6934;4:10.7701765631373:7.42969445082454e-05:0.00115623581992201!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106992447366467!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00249562121306363 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.50138,0.0631091,0.257053,0.0110447,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.00443949,0.268949,0.119094,0.186914,0.00783157,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.460009,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.115055,0.0792005,0.113084,0.216289,0.00050917,0.0892037,0.116917,1.0129e-06,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,4.67924e-05,0.125428,0.290468,0.0562614,0.150119,0.368178,0.0580589,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.00704756,0.0213527,0.0077267,0.347653,0.0759036,0.0010213,0.184542,2.05001e-05,0.280878,0.00149586,0.000122895,0.423154,0.187509,0.0665478,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,7.74459e-06,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.00502016,0.0755515,0.0302655,0.164103,0.141472,0.085537,1.3015e-06,0.0438087,0.0052702,0.0302521,3.95556e-05,0.262198,0.202388,0.701894,0.0913381,0.00877859,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.0476129,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,3.51267e-07,0.166112,0.0534404,0.392741,0.2321,0.017128,0.202544,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.00409908,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0687034,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,4.20645e-06,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.0634515,0.0242127,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.00685525,0.0816983,0.226367,0.0241753,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.0314217,0.810881,0.0179298,0.73998,0.100371,0.20358,0.179737,0.420045,0.73391,0.332539,0.545329,0.464128,0.0881702,0.594055,0.414547,0.489273,0.413223,9.4072e-05,0.00988117,0.34505,0.369161,0.500422,0.000668879,0.323639,0.00807111,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.0395226,0.467825,0.051755,0.751064,0.632838,0.076794,0.0249003,0.161502,0.221488,0.0588752,0.00976201,0.0838963,0.583749,1.54946e-05,0.286293,0.606558,0.708425,0.359128,0.395864,0.683133,0.368633,0.0463511,0.682118,0.512763,0.369971,0.578349,1.34371e-07,0.000471469,0.683088,0.356005,0.235444,0.804772,0.899283,0.548076,0.349116,0.302142,0.239545,0.432689,0.640367,0.067384,0.000424336,0.606382,0.250139,0.000547901,0.316925,0.356561,0.210197,0.0241359,0.0883859,0.0962508,0.238465,0.00802494,0.853221,0.112487,0.0353617,0.0636247,0.284591,0.28972,0.00879043,0.280307,0.001754,0.212518,0.0596868,0.0984075,0.293026,0.16661,0.00141833,0.0149898,0.372182,0.429205,0.578951,0.00124605,0.0166186,0.784024,0.35234,0.644643,0.172079,0.291917,0.104649,0.25441,0.0221108,0.672876,0.000943563,0.0594062,0.517001,0.0746589,0.0497525,0.419676,0.188259,0.189182,0.000562262,0.46699,0.187849,0.560187,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.00873625,0.651295,0.00133237,0.360161,0.109421,0.386216,0.385297,0.706685,0.239407,0.00345961,0.360203,0.333725,0.447838,0.0467176,0.500627,0.00632745,0.00341265,0.565545,0.0414975,0.265037,0.629795,0.754776,0.53531,0.341771,0.0186884,0.0236936,0.356381,0.184395,0.194887,0.256884,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.629381,0.729876,0.433821,0.000704368,0.436806,0.576549,0.499072,0.744662,1.0709e-05,0.0922563,3.33555e-06,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.111145,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.0157712,0.000201665,0.0637178,0.257309,0.0334797,0.166608,0.227224,0.238082,0.000127796,0.115115,0.00814887,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0734014,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,2.372e-10,0.102587,0.0742013,2.93934e-05,1.65686e-05,0.0514927,0.000719925,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,2.47822e-05,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.000729529,0.0922008,0.187953,0.051459,0.114868,0.0726892,0.0187556,0.32305,0.278397,0.245002,0.170848,0.487259,0.051371,2.84648e-08,0.100188,0.223102,0.107653,0.235857,0.017951,0.191914,0.184022,0.216557,0.182956,0.116818,0.0139335,0.36316,0.0625685,0.124464,0.544477,0.000993709,0.101893,0.0107308,0.167635,0.171311,0.458838,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,4.28135e-06,0.00103527,0.267945,0.758305,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.012683,0.0939463,0.00500232,0.0779623,0.0471607,0.163865,0.226359,0.108863,0.881117,0.265324,0.043404,0.141699,0.00406251,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.000625037,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.0756617,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.0153391,4.05918e-06,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.0578865,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.0338237,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.000111727,1.34383e-07,0.459994,0.523209,0.0465928,0.25423,0.490559,0.45013,0.153911,0.0272171,0.0302459,0.747471,0.174869,0.0301009,0.483077,0.000329342,0.603763,0.184287,0.0181844,0.00233402,0.934991,0.290703,0.254935,0.722684,0.478691,0.360199,0.241059,0.290133,0.824761,0.0768516,0.212703,0.0515679,0.364079,0.680099,0.215551,0.104625,2.99053e-06,0.328518,0.545608,0.310552,0.143396,0.483764,0.528161,0.0201581,0.209437,0.0404917,0.161672,0.0141441,0.00647536,0.464001,0.152018,0.0572388,0.150592,0.546688,0.137711,8.33266e-07,0.257956,0.264245,0.379063,0.326516,0.522925,0.00284816,0.0277366,0.202522,0.183837,8.35813e-07,0.0083072,0.3955,0.442469,0.212239,0.294954,0.156999,0.00115593,0.301684,0.39549,0.000170962,0.357409,0.599068,0.365184,0.50338,0.252827,0.404625,0.172147,0.0187136,0.715362,0.0286876,0.62689,0.884725,0.0854676,0.284496,0.512545,0.512178,0.563206,0.527709,0.684899,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.0149457,0.582542,0.226491,0.000244281,0.463987,0.260097,0.000790209,0.454761,0.0202528,0.483658,0.452129,0.301581,0.000277138,0.346776,0.466529,0.545655,0.438176,0.349112,0.0485429,0.385425,0.307816,0.461541,0.386339,0.382854,0.598787,0.478745,5.90805e-05,0.319747,0.475047,0.00972177,0.608127,0.282281,0.0710918,0.000241621,0.246827,0.564333,0.70712,0.387134,0.559969,0.0105234,0.668972,0.574252,0.148933,0.346636,0.00360135,0.348802,0.476541,0.0118751,0.447581,0.42505,0.254628,0.713293,0.479347,0.416962,0.264955,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.000772039,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.0025865,0.391071,0.00460365,0.0358792,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0099749,0.112422,0.0155121,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.00888732,0.000266472,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.0227344,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.000752253,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.000654779,0.15156,1.58085e-06,0.313858,0.0271466,0.25788,0.00116104,0.035332,0.0528669,0.0221551,0.170837,0.0604859,0.28543,0.0268645,0.228479,0.000378293,0.000269465,0.0140513,0.355805,0.0433915,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.000809519,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.000477314,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.00104239,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.0364266,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.0510917,0.0976762,0.151361,0.279606,0.286696,0.150674,0.251128,0.00304766,0.35674,0.35852,0.00707033,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.0585101,0.0386145,0.450113 | |tfbs_overrepresentation=0.191353,0.0774498,0.50138,0.0631091,0.257053,0.0110447,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.00443949,0.268949,0.119094,0.186914,0.00783157,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.460009,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.115055,0.0792005,0.113084,0.216289,0.00050917,0.0892037,0.116917,1.0129e-06,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,4.67924e-05,0.125428,0.290468,0.0562614,0.150119,0.368178,0.0580589,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.00704756,0.0213527,0.0077267,0.347653,0.0759036,0.0010213,0.184542,2.05001e-05,0.280878,0.00149586,0.000122895,0.423154,0.187509,0.0665478,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,7.74459e-06,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.00502016,0.0755515,0.0302655,0.164103,0.141472,0.085537,1.3015e-06,0.0438087,0.0052702,0.0302521,3.95556e-05,0.262198,0.202388,0.701894,0.0913381,0.00877859,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.0476129,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,3.51267e-07,0.166112,0.0534404,0.392741,0.2321,0.017128,0.202544,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.00409908,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.0687034,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,4.20645e-06,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.0634515,0.0242127,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.00685525,0.0816983,0.226367,0.0241753,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.0314217,0.810881,0.0179298,0.73998,0.100371,0.20358,0.179737,0.420045,0.73391,0.332539,0.545329,0.464128,0.0881702,0.594055,0.414547,0.489273,0.413223,9.4072e-05,0.00988117,0.34505,0.369161,0.500422,0.000668879,0.323639,0.00807111,0.241524,0.45167,0.234628,0.520726,0.143893,0.41477,0.279946,0.0395226,0.467825,0.051755,0.751064,0.632838,0.076794,0.0249003,0.161502,0.221488,0.0588752,0.00976201,0.0838963,0.583749,1.54946e-05,0.286293,0.606558,0.708425,0.359128,0.395864,0.683133,0.368633,0.0463511,0.682118,0.512763,0.369971,0.578349,1.34371e-07,0.000471469,0.683088,0.356005,0.235444,0.804772,0.899283,0.548076,0.349116,0.302142,0.239545,0.432689,0.640367,0.067384,0.000424336,0.606382,0.250139,0.000547901,0.316925,0.356561,0.210197,0.0241359,0.0883859,0.0962508,0.238465,0.00802494,0.853221,0.112487,0.0353617,0.0636247,0.284591,0.28972,0.00879043,0.280307,0.001754,0.212518,0.0596868,0.0984075,0.293026,0.16661,0.00141833,0.0149898,0.372182,0.429205,0.578951,0.00124605,0.0166186,0.784024,0.35234,0.644643,0.172079,0.291917,0.104649,0.25441,0.0221108,0.672876,0.000943563,0.0594062,0.517001,0.0746589,0.0497525,0.419676,0.188259,0.189182,0.000562262,0.46699,0.187849,0.560187,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.00873625,0.651295,0.00133237,0.360161,0.109421,0.386216,0.385297,0.706685,0.239407,0.00345961,0.360203,0.333725,0.447838,0.0467176,0.500627,0.00632745,0.00341265,0.565545,0.0414975,0.265037,0.629795,0.754776,0.53531,0.341771,0.0186884,0.0236936,0.356381,0.184395,0.194887,0.256884,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.629381,0.729876,0.433821,0.000704368,0.436806,0.576549,0.499072,0.744662,1.0709e-05,0.0922563,3.33555e-06,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.111145,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.0157712,0.000201665,0.0637178,0.257309,0.0334797,0.166608,0.227224,0.238082,0.000127796,0.115115,0.00814887,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0734014,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,2.372e-10,0.102587,0.0742013,2.93934e-05,1.65686e-05,0.0514927,0.000719925,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,2.47822e-05,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.000729529,0.0922008,0.187953,0.051459,0.114868,0.0726892,0.0187556,0.32305,0.278397,0.245002,0.170848,0.487259,0.051371,2.84648e-08,0.100188,0.223102,0.107653,0.235857,0.017951,0.191914,0.184022,0.216557,0.182956,0.116818,0.0139335,0.36316,0.0625685,0.124464,0.544477,0.000993709,0.101893,0.0107308,0.167635,0.171311,0.458838,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,4.28135e-06,0.00103527,0.267945,0.758305,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.0803251,0.226641,0.012683,0.0939463,0.00500232,0.0779623,0.0471607,0.163865,0.226359,0.108863,0.881117,0.265324,0.043404,0.141699,0.00406251,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.000625037,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.0756617,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.0153391,4.05918e-06,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.24948,0.178639,0.291976,0.0578865,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.0338237,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.000111727,1.34383e-07,0.459994,0.523209,0.0465928,0.25423,0.490559,0.45013,0.153911,0.0272171,0.0302459,0.747471,0.174869,0.0301009,0.483077,0.000329342,0.603763,0.184287,0.0181844,0.00233402,0.934991,0.290703,0.254935,0.722684,0.478691,0.360199,0.241059,0.290133,0.824761,0.0768516,0.212703,0.0515679,0.364079,0.680099,0.215551,0.104625,2.99053e-06,0.328518,0.545608,0.310552,0.143396,0.483764,0.528161,0.0201581,0.209437,0.0404917,0.161672,0.0141441,0.00647536,0.464001,0.152018,0.0572388,0.150592,0.546688,0.137711,8.33266e-07,0.257956,0.264245,0.379063,0.326516,0.522925,0.00284816,0.0277366,0.202522,0.183837,8.35813e-07,0.0083072,0.3955,0.442469,0.212239,0.294954,0.156999,0.00115593,0.301684,0.39549,0.000170962,0.357409,0.599068,0.365184,0.50338,0.252827,0.404625,0.172147,0.0187136,0.715362,0.0286876,0.62689,0.884725,0.0854676,0.284496,0.512545,0.512178,0.563206,0.527709,0.684899,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.0149457,0.582542,0.226491,0.000244281,0.463987,0.260097,0.000790209,0.454761,0.0202528,0.483658,0.452129,0.301581,0.000277138,0.346776,0.466529,0.545655,0.438176,0.349112,0.0485429,0.385425,0.307816,0.461541,0.386339,0.382854,0.598787,0.478745,5.90805e-05,0.319747,0.475047,0.00972177,0.608127,0.282281,0.0710918,0.000241621,0.246827,0.564333,0.70712,0.387134,0.559969,0.0105234,0.668972,0.574252,0.148933,0.346636,0.00360135,0.348802,0.476541,0.0118751,0.447581,0.42505,0.254628,0.713293,0.479347,0.416962,0.264955,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.000772039,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.0025865,0.391071,0.00460365,0.0358792,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0099749,0.112422,0.0155121,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.00888732,0.000266472,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.0227344,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.000752253,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.000654779,0.15156,1.58085e-06,0.313858,0.0271466,0.25788,0.00116104,0.035332,0.0528669,0.0221551,0.170837,0.0604859,0.28543,0.0268645,0.228479,0.000378293,0.000269465,0.0140513,0.355805,0.0433915,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.000809519,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.000477314,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.00104239,0.262778,0.373453,0.362662,0.433518,0.184359,0.334474,0.325785,0.0364266,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.0510917,0.0976762,0.151361,0.279606,0.286696,0.150674,0.251128,0.00304766,0.35674,0.35852,0.00707033,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.0585101,0.0386145,0.450113 | ||
|tfbs_overrepresentation_for_novel_motifs=0.590005,0.0888524,1.42265,0.741427,0.534346,0.739643,0.821651,1.02453,0.392841,0.462021,0.706765,0.867962,0.341754,0.809319,1.31925,0.559384,1.05593,0.471262,1.67497,0.223552,0.581762,0.505745,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,2.28567,3.10169,0.682839,1.09415,0.433165,0.344471,1.23824,0.0842336,4.26548,1.75478,1.17228,0.371755,0.493145,1.59701,0.183156,0.53106,0.314427,1.49501,0.822818,0.694903,0.515703,0.538016,0.90714,0.83543,0.699149,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,0.776148,1.13655,0.825354,0.393426,1.02706,1.96835,0.991076,1.42026,1.79268,1.08337,1.62905,1.5667,0.402607,2.7761,1.32819,6.51544,0.321165,0.305238,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,1.27559,2.34631,1.18341,0.793068,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.354969,1.15558,0.939507,0.272395,0.465545,1.1057,4.20395,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,1.28386,0.594299,1.14697,0.575476,1.70537,1.46636,0.489254,3.22553,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,3.45425,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,2.76338,1.37788,0.852645,1.52813,0.283547,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,1.58937,1.95303,0.66252,3.0147,1.24902,5.81307,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,2.50192,0.997702,0.843324,0.423521,0.820225,1.4289 | |||
}} | }} | ||
Revision as of 15:42, 26 November 2012
Full id: C2756_skeletal_Adipocyte_mature_Preadipocyte_Hepatic_Mesenchymal_aorta
Phase1 CAGE Peaks
| Hg19::chr3:8543500..8543518,+ | p1@LMCD1 |
| Hg19::chr3:8543533..8543553,+ | p2@LMCD1 |
| Hg19::chr3:8543561..8543579,+ | p3@LMCD1 |
| Hg19::chr3:8543591..8543602,+ | p4@LMCD1 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| fat cell | 5.84e-09 | 15 |
| fibroblast | 3.95e-07 | 76 |
| Ontology term | p-value | n |
|---|---|---|
| organism subdivision | 6.52e-14 | 264 |
| trunk | 8.71e-13 | 199 |
| mesenchyme | 3.54e-12 | 160 |
| entire embryonic mesenchyme | 3.54e-12 | 160 |
| epithelium | 8.53e-12 | 306 |
| cell layer | 1.03e-11 | 309 |
| multi-tissue structure | 9.48e-11 | 342 |
| multi-cellular organism | 1.62e-10 | 656 |
| compound organ | 2.69e-10 | 68 |
| trunk mesenchyme | 1.84e-08 | 122 |
| subdivision of trunk | 2.77e-08 | 112 |
| epithelial tube | 5.55e-08 | 117 |
| anatomical cluster | 1.83e-07 | 373 |
| anatomical conduit | 2.41e-07 | 240 |
| primary circulatory organ | 2.42e-07 | 27 |
| adipose tissue | 2.52e-07 | 14 |
| tube | 4.70e-07 | 192 |
| epithelial vesicle | 7.18e-07 | 78 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CHD2#1106 | 4 | 10.3440228341169 | 8.73193255208051e-05 | 0.00129226909991035 |
| CTCF#10664 | 4 | 5.36025637307503 | 0.00121114538164362 | 0.00818869764442793 |
| E2F1#1869 | 4 | 4.90738921487932 | 0.00172402235736179 | 0.0106674074874405 |
| E2F6#1876 | 4 | 5.01715573169739 | 0.0015780219347306 | 0.00998406935489968 |
| FOS#2353 | 4 | 8.9979553088944 | 0.000152514771116863 | 0.00195178166654504 |
| HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.018643664847354 |
| MAFF#23764 | 2 | 28.1576782449726 | 0.00184687618036715 | 0.0109271414797963 |
| MAX#4149 | 4 | 6.45255550900712 | 0.000576761319564549 | 0.00486090828389299 |
| MYC#4609 | 4 | 5.2222818716094 | 0.00134430939527274 | 0.00888822036799755 |
| NFYA#4800 | 4 | 18.4255806998305 | 8.67100748407158e-06 | 0.000234913450228003 |
| NFYB#4801 | 4 | 16.7597932535365 | 1.26678572070404e-05 | 0.000311738534129617 |
| NRF1#4899 | 4 | 12.2102794477109 | 4.49717228915276e-05 | 0.000794855604513158 |
| PAX5#5079 | 4 | 6.66956553117783 | 0.000505277416948326 | 0.00444609218541294 |
| RFX5#5993 | 4 | 12.0479108271951 | 4.74457429336527e-05 | 0.000827657582469977 |
| SETDB1#9869 | 4 | 40.3200261780105 | 3.77887289069054e-07 | 1.8528718583607e-05 |
| SP1#6667 | 4 | 5.6983813781409 | 0.000948260606533398 | 0.00685271169981605 |
| SP2#6668 | 4 | 26.1535304938446 | 2.13562021071447e-06 | 7.75528648076526e-05 |
| SRF#6722 | 4 | 13.7971782621678 | 2.75840773062708e-05 | 0.000585182500465084 |
| TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.032294462586153 |
| TCF7L2#6934 | 4 | 10.7701765631373 | 7.42969445082454e-05 | 0.00115623581992201 |
| YY1#7528 | 4 | 4.91117074985386 | 0.0017187183805544 | 0.0106992447366467 |
| ZNF263#10127 | 4 | 8.22184163701068 | 0.000218787118095832 | 0.00249562121306363 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
