FFCP PHASE1:Mm9::chr3:50247378..50247387,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=26570|HGNC=|UniProt=Q9WTR6,Q542C8,Q8BYV9|association_with_transcript=147bp_to_ENSMUST00000029297,ENSMUST00000142932,NM_011990,uc008pdi.1,uc008pdj.1_5end|description=CAGE_peak_6_at_Slc7a11_5end|id=chr3:50247378..50247387,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000068,1.81e-08,3;CL:0002202,1.81e-08,3;CL:0000069,1.81e-08,3;CL:0002632,1.81e-08,3;CL:0002368,1.81e-08,3;CL:0000307,1.81e-08,3;CL:0000377,1.81e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000072!4.44e-08!27;UBERON:0000063!6.33e-08!35|ontology_enrichment_uberon_v019_2=UBERON:0000072,3.79e-16,27;UBERON:0006562,3.76e-11,24;UBERON:0001557,3.76e-11,24;UBERON:0001042,3.76e-11,24;UBERON:0008814,3.76e-11,24;UBERON:0009145,3.76e-11,24;UBERON:0000153,1.13e-10,43;UBERON:0007811,6.84e-10,36;UBERON:0002370,1.06e-09,23;UBERON:0000974,1.06e-09,23;UBERON:0004807,1.06e-09,23;UBERON:0005058,1.06e-09,23;UBERON:0003351,1.06e-09,23;UBERON:0009113,1.06e-09,23;UBERON:0003295,1.06e-09,23;UBERON:0009722,1.06e-09,23;UBERON:0005562,1.06e-09,23;UBERON:0007690,1.06e-09,23;UBERON:0000065,1.28e-09,41;UBERON:0001004,2.53e-09,42;UBERON:0003408,3.20e-09,24;UBERON:0003126,1.81e-08,3;UBERON:0001005,1.81e-08,3;UBERON:0007196,1.81e-08,3;UBERON:0001558,1.81e-08,3;UBERON:0001264,1.23e-07,12;UBERON:0004177,2.58e-07,29;UBERON:0005057,2.58e-07,29|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0,0,0.140788722151667,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,5.02237956884289,0.7813353445238,0.523523743973798,21.1763335691165,14.3439551841274,2.42755176515577,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0.677689064138264,0.889294796111139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0.182975287204819,0,0,0,0.15279824777681,0.294628585473668,0,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81438353314578,3.04031838570118,1.01104889002957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0,0.162241263067758,0,0.497627882440372,1.51633655060205,11.995185785529,0.130120442962704,0,0.180062129805349,0.30140963567143,0.0680364991513279,0,0,3.10444044886819,1.5089759505299,0,0.351902248327898,0,1.39023624612799,0.348252166522167,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0.660837565967596,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0.398282546508734,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0.275936746304732,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,2.41298144854057,0,0,3.29940245945071,10.619611067197,0,0,0.377210159511796,1.47650946440386,0.922305443831782,0,1.09060118843252,0,2.21225730555071,10.5418608574999,3.09406629744561,0,0,0,0,0,0,0.329098041204242,0,0,0,0.220528398054962,0.16488625294148,0.161464426695906,0.180938774784468,0.119372344003136,1.14898629821543,0.291480836629851,0.18542530201051,0,0,0.185194527369712,0,0,0,1.01987057996313,0.69975726161829,0.690999869022119,0,0,0,0,0.418176592028937,0,0.539457385539283,0.578574190077352,0.785267825952089,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,3.79213344753814,0,0,0.129920822977795,0.716106782669926,2.38417625737518,1.20195449519969,1.03382669022204,1.9183625490148,2.057583779685,2.41982844328417,2.72882066071307,1.53938946624527,6.31135271780472,1.36038230169127,0,0,0,0,0,6.41030684935428,0.643105137237198,0,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.128050304809739,0.114870937911227,0,0.115884325944855,0,0,0.147198920134397,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0|short_description=p6@Slc7a11}} | ||
|EntrezGene=26570 | |||
|HGNC= | |||
|UniProt=Q9WTR6,Q542C8,Q8BYV9 | |||
|association_with_transcript=147bp_to_ENSMUST00000029297,ENSMUST00000142932,NM_011990,uc008pdi.1,uc008pdj.1_5end | |||
|description=CAGE_peak_6_at_Slc7a11_5end | |||
|id=chr3:50247378..50247387,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.81e-08,3;CL:0002202,1.81e-08,3;CL:0000069,1.81e-08,3;CL:0002632,1.81e-08,3;CL:0002368,1.81e-08,3;CL:0000307,1.81e-08,3;CL:0000377,1.81e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000072!4.44e-08!27;UBERON:0000063!6.33e-08!35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000072,3.79e-16,27;UBERON:0006562,3.76e-11,24;UBERON:0001557,3.76e-11,24;UBERON:0001042,3.76e-11,24;UBERON:0008814,3.76e-11,24;UBERON:0009145,3.76e-11,24;UBERON:0000153,1.13e-10,43;UBERON:0007811,6.84e-10,36;UBERON:0002370,1.06e-09,23;UBERON:0000974,1.06e-09,23;UBERON:0004807,1.06e-09,23;UBERON:0005058,1.06e-09,23;UBERON:0003351,1.06e-09,23;UBERON:0009113,1.06e-09,23;UBERON:0003295,1.06e-09,23;UBERON:0009722,1.06e-09,23;UBERON:0005562,1.06e-09,23;UBERON:0007690,1.06e-09,23;UBERON:0000065,1.28e-09,41;UBERON:0001004,2.53e-09,42;UBERON:0003408,3.20e-09,24;UBERON:0003126,1.81e-08,3;UBERON:0001005,1.81e-08,3;UBERON:0007196,1.81e-08,3;UBERON:0001558,1.81e-08,3;UBERON:0001264,1.23e-07,12;UBERON:0004177,2.58e-07,29;UBERON:0005057,2.58e-07,29 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0,0,0.140788722151667,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,5.02237956884289,0.7813353445238,0.523523743973798,21.1763335691165,14.3439551841274,2.42755176515577,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0.677689064138264,0.889294796111139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0.182975287204819,0,0,0,0.15279824777681,0.294628585473668,0,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81438353314578,3.04031838570118,1.01104889002957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0,0.162241263067758,0,0.497627882440372,1.51633655060205,11.995185785529,0.130120442962704,0,0.180062129805349,0.30140963567143,0.0680364991513279,0,0,3.10444044886819,1.5089759505299,0,0.351902248327898,0,1.39023624612799,0.348252166522167,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0.660837565967596,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0.398282546508734,0.189667900953082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0.275936746304732,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,2.41298144854057,0,0,3.29940245945071,10.619611067197,0,0,0.377210159511796,1.47650946440386,0.922305443831782,0,1.09060118843252,0,2.21225730555071,10.5418608574999,3.09406629744561,0,0,0,0,0,0,0.329098041204242,0,0,0,0.220528398054962,0.16488625294148,0.161464426695906,0.180938774784468,0.119372344003136,1.14898629821543,0.291480836629851,0.18542530201051,0,0,0.185194527369712,0,0,0,1.01987057996313,0.69975726161829,0.690999869022119,0,0,0,0,0.418176592028937,0,0.539457385539283,0.578574190077352,0.785267825952089,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,3.79213344753814,0,0,0.129920822977795,0.716106782669926,2.38417625737518,1.20195449519969,1.03382669022204,1.9183625490148,2.057583779685,2.41982844328417,2.72882066071307,1.53938946624527,6.31135271780472,1.36038230169127,0,0,0,0,0,6.41030684935428,0.643105137237198,0,0,0,0,0.171853182343688,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.128050304809739,0.114870937911227,0,0.115884325944855,0,0,0.147198920134397,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p6@Slc7a11 | |||
}} |
Revision as of 02:14, 14 September 2013
Short description: | p6@Slc7a11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Slc7a11_5end |
Coexpression cluster: | NA |
Association with transcript: | 147bp_to_ENSMUST00000029297, ENSMUST00000142932, NM_011990, uc008pdi.1, uc008pdj.1_5end |
EntrezGene: | Slc7a11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.81e-08 | 3 |
epithelial cell of tracheobronchial tree | 1.81e-08 | 3 |
branched duct epithelial cell | 1.81e-08 | 3 |
epithelial cell of lower respiratory tract | 1.81e-08 | 3 |
respiratory epithelial cell | 1.81e-08 | 3 |
tracheal epithelial cell | 1.81e-08 | 3 |
tracheoblast | 1.81e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
segment of respiratory tract | 3.79e-16 | 27 |
pharynx | 3.76e-11 | 24 |
upper respiratory tract | 3.76e-11 | 24 |
chordate pharynx | 3.76e-11 | 24 |
pharyngeal arch system | 3.76e-11 | 24 |
pharyngeal region of foregut | 3.76e-11 | 24 |
anterior region of body | 1.13e-10 | 43 |
craniocervical region | 6.84e-10 | 36 |
thymus | 1.06e-09 | 23 |
neck | 1.06e-09 | 23 |
respiratory system epithelium | 1.06e-09 | 23 |
hemolymphoid system gland | 1.06e-09 | 23 |
pharyngeal epithelium | 1.06e-09 | 23 |
thymic region | 1.06e-09 | 23 |
pharyngeal gland | 1.06e-09 | 23 |
entire pharyngeal arch endoderm | 1.06e-09 | 23 |
thymus primordium | 1.06e-09 | 23 |
early pharyngeal endoderm | 1.06e-09 | 23 |
respiratory tract | 1.28e-09 | 41 |
respiratory system | 2.53e-09 | 42 |
gland of gut | 3.20e-09 | 24 |
trachea | 1.81e-08 | 3 |
respiratory airway | 1.81e-08 | 3 |
tracheobronchial tree | 1.81e-08 | 3 |
lower respiratory tract | 1.81e-08 | 3 |
pancreas | 1.23e-07 | 12 |
hemopoietic organ | 2.58e-07 | 29 |
immune organ | 2.58e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.