FFCP PHASE1:Mm9::chr5:89104567..89104588,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=231413|HGNC=|UniProt=E9Q179,Q8C5Q4|association_with_transcript=16bp_to_NM_001098476,uc008yab.1_5end|description=CAGE_peak_5_at_Grsf1_5end|id=chr5:89104567..89104588,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.22e-16!63;UBERON:0004111!9.48e-15!122;UBERON:0000025!3.39e-14!114;UBERON:0004121!3.90e-13!102;UBERON:0000924!3.90e-13!102;UBERON:0006601!3.90e-13!102;UBERON:0003056!1.09e-12!49;UBERON:0002346!1.69e-12!71;UBERON:0003075!1.69e-12!71;UBERON:0007284!1.69e-12!71;UBERON:0001017!4.75e-11!73;UBERON:0005743!4.75e-11!73;UBERON:0000955!7.94e-11!50;UBERON:0006238!7.94e-11!50;UBERON:0000073!8.94e-11!75;UBERON:0001016!8.94e-11!75;UBERON:0002616!2.25e-10!49;UBERON:0001049!4.09e-09!52;UBERON:0005068!4.09e-09!52;UBERON:0006241!4.09e-09!52;UBERON:0007135!4.09e-09!52;UBERON:0003080!1.17e-08!40;UBERON:0002780!3.62e-08!39;UBERON:0001890!3.62e-08!39;UBERON:0006240!3.62e-08!39|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.32e-20,92;UBERON:0002346,1.03e-14,64;UBERON:0003075,1.03e-14,64;UBERON:0007284,1.03e-14,64;UBERON:0004111,4.30e-14,122;UBERON:0004121,4.46e-14,95;UBERON:0000924,4.46e-14,95;UBERON:0006601,4.46e-14,95;UBERON:0000025,7.83e-14,114;UBERON:0003056,2.18e-13,49;UBERON:0010371,1.65e-12,73;UBERON:0001017,1.46e-11,73;UBERON:0001016,2.87e-11,75;UBERON:0000955,2.32e-10,47;UBERON:0006238,2.32e-10,47;UBERON:0000073,2.42e-10,54;UBERON:0002616,7.04e-10,46;UBERON:0001049,1.78e-09,52;UBERON:0005068,1.78e-09,52;UBERON:0006241,1.78e-09,52;UBERON:0007135,1.78e-09,52;UBERON:0003080,5.48e-09,40;UBERON:0002780,1.87e-08,39;UBERON:0001890,1.87e-08,39;UBERON:0006240,1.87e-08,39;UBERON:0000033,6.83e-07,13;UBERON:0000020,7.19e-07,12;UBERON:0001032,7.19e-07,12;UBERON:0004456,7.19e-07,12|phase1_expression=3.36312578920067,0.697950815278722,0.454999239389536,1.81478526784098,0.500895729946347,0.671517087647559,0.233612640595526,0.129123323441576,0.140788722151667,0.468129052643987,0,0,0,0.0874204024189974,0.333109761815663,0.202475267389826,0,0,0,0,2.04103896362567,0.496454756004426,0.783599367416806,0.639969691173627,0,0.57423196411502,0.86152399231815,0,0.570070258369122,0.252030129759931,0.221730510655305,0,0.61506478758457,0,0.288851619751275,0.498703936075477,0.612508068787107,1.67412652294763,0.7813353445238,0.523523743973798,0,0,0,0.125896817975577,0.608261587317087,1.28482726513177,0,0.218025156380447,0.439372365468944,0.388859798148567,0.699932108126813,0,0.503347818173209,1.45072428402269,1.00828139742739,0.514518872071894,0.85960031981627,0,0.606949382578793,0.528990979272033,1.26766280701236,0,0,0,0,0,0.299600110518405,1.15265491596466,2.38486108309499,2.29510095163874,2.52389953621658,0.856952953211411,0.662605622854841,2.57230678351403,3.35459148563827,0.919218786610021,3.30347642998166,4.59674417106676,5.83704826373725,0.659431438650969,1.18933936683133,3.12548022334056,3.07101298901519,1.68828783009504,3.51435969886663,1.47314292736834,2.13557521198654,1.3047961207771,0.454357159999104,1.96486056277642,1.15945795480671,0,4.0798280022465,4.85732872474035,0.649776417447669,5.82434953226536,3.7919993435573,0,0.259786004602869,0,2.25349471642689,0,0,0,0.432982082022428,0.760079596425296,1.01104889002957,3.9964357901671,0.258937883647172,0.593768556259299,0.867426633830679,1.21786191324856,0.461230994512117,1.3565037649736,1.88141931417128,0.753999547978053,2.22475470960936,2.60278842455841,0,1.45590164952668,1.32504911076236,2.42437626567611,0,3.22058876712702,5.02672096352292,0.255457055208591,0.599075622529601,0,0.635351135365324,5.99162557619291,7.32000964509802,1.7591609295801,3.99795936442236,2.81287003063364,6.02585329222724,4.2182728397617,1.42575109390443,1.7416975885413,0.505445516867349,10.5220927943237,3.90361328888111,5.0578462975364,2.34080768746954,2.56198190320716,5.8511389270142,7.17436833595159,4.77878795254617,6.20888089773638,1.29340795759705,1.70195472151037,0.527853372491847,0,0.556094498451196,1.0447564995665,0.205782136407943,2.7864797354589,0.702213187313235,0.51469581422943,0.852490498186778,2.89976081549703,1.64168241986767,2.16074473753218,3.07768156260773,3.34499193970586,4.62801338662135,6.74348439776183,5.90201483079162,10.0418194435766,6.7469538464527,11.1633875573785,12.8088719082452,14.3275987676826,12.2948064562988,11.4075455946316,3.36463917702604,2.98423375899925,0.660837565967596,1.58670339998127,1.06644125267617,2.09013004674395,1.03093969057675,0.201683524623343,0.444756087689741,0.951128130562796,0.474529061544512,1.4822905925161,1.50801125280162,1.39269530428806,1.16978452271472,0,0.864552199498777,0.995706366271836,0.758671603812327,0.685491075658373,0,2.24016460629846,2.52138233317913,2.94570443539338,2.90888070771584,6.9376769550413,3.61097074035162,5.55287237648102,5.92905254174298,0.333690211432188,0.393117990226406,0.449724224769707,0.405720242777006,0.482354319504834,0.763877555344259,1.43848068725405,10.0523840600522,1.64736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| ||
|EntrezGene=231413 | |||
|HGNC= | |||
|UniProt=E9Q179,Q8C5Q4 | |||
|association_with_transcript=16bp_to_NM_001098476,uc008yab.1_5end | |||
|description=CAGE_peak_5_at_Grsf1_5end | |||
|id=chr5:89104567..89104588,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.22e-16!63;UBERON:0004111!9.48e-15!122;UBERON:0000025!3.39e-14!114;UBERON:0004121!3.90e-13!102;UBERON:0000924!3.90e-13!102;UBERON:0006601!3.90e-13!102;UBERON:0003056!1.09e-12!49;UBERON:0002346!1.69e-12!71;UBERON:0003075!1.69e-12!71;UBERON:0007284!1.69e-12!71;UBERON:0001017!4.75e-11!73;UBERON:0005743!4.75e-11!73;UBERON:0000955!7.94e-11!50;UBERON:0006238!7.94e-11!50;UBERON:0000073!8.94e-11!75;UBERON:0001016!8.94e-11!75;UBERON:0002616!2.25e-10!49;UBERON:0001049!4.09e-09!52;UBERON:0005068!4.09e-09!52;UBERON:0006241!4.09e-09!52;UBERON:0007135!4.09e-09!52;UBERON:0003080!1.17e-08!40;UBERON:0002780!3.62e-08!39;UBERON:0001890!3.62e-08!39;UBERON:0006240!3.62e-08!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,8.32e-20,92;UBERON:0002346,1.03e-14,64;UBERON:0003075,1.03e-14,64;UBERON:0007284,1.03e-14,64;UBERON:0004111,4.30e-14,122;UBERON:0004121,4.46e-14,95;UBERON:0000924,4.46e-14,95;UBERON:0006601,4.46e-14,95;UBERON:0000025,7.83e-14,114;UBERON:0003056,2.18e-13,49;UBERON:0010371,1.65e-12,73;UBERON:0001017,1.46e-11,73;UBERON:0001016,2.87e-11,75;UBERON:0000955,2.32e-10,47;UBERON:0006238,2.32e-10,47;UBERON:0000073,2.42e-10,54;UBERON:0002616,7.04e-10,46;UBERON:0001049,1.78e-09,52;UBERON:0005068,1.78e-09,52;UBERON:0006241,1.78e-09,52;UBERON:0007135,1.78e-09,52;UBERON:0003080,5.48e-09,40;UBERON:0002780,1.87e-08,39;UBERON:0001890,1.87e-08,39;UBERON:0006240,1.87e-08,39;UBERON:0000033,6.83e-07,13;UBERON:0000020,7.19e-07,12;UBERON:0001032,7.19e-07,12;UBERON:0004456,7.19e-07,12 | |||
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| |||
|short_description=p5@Grsf1 | |||
}} |
Revision as of 08:12, 14 September 2013
Short description: | p5@Grsf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Grsf1_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_NM_001098476, uc008yab.1_5end |
EntrezGene: | Grsf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 8.32e-20 | 92 |
neurectoderm | 1.03e-14 | 64 |
neural plate | 1.03e-14 | 64 |
presumptive neural plate | 1.03e-14 | 64 |
anatomical conduit | 4.30e-14 | 122 |
ectoderm-derived structure | 4.46e-14 | 95 |
ectoderm | 4.46e-14 | 95 |
presumptive ectoderm | 4.46e-14 | 95 |
tube | 7.83e-14 | 114 |
pre-chordal neural plate | 2.18e-13 | 49 |
ecto-epithelium | 1.65e-12 | 73 |
central nervous system | 1.46e-11 | 73 |
nervous system | 2.87e-11 | 75 |
brain | 2.32e-10 | 47 |
future brain | 2.32e-10 | 47 |
regional part of nervous system | 2.42e-10 | 54 |
regional part of brain | 7.04e-10 | 46 |
neural tube | 1.78e-09 | 52 |
neural rod | 1.78e-09 | 52 |
future spinal cord | 1.78e-09 | 52 |
neural keel | 1.78e-09 | 52 |
anterior neural tube | 5.48e-09 | 40 |
regional part of forebrain | 1.87e-08 | 39 |
forebrain | 1.87e-08 | 39 |
future forebrain | 1.87e-08 | 39 |
head | 6.83e-07 | 13 |
sense organ | 7.19e-07 | 12 |
sensory system | 7.19e-07 | 12 |
entire sense organ system | 7.19e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.