FFCP PHASE1:Mm9::chr18:61195843..61195864,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12590|HGNC=|MCL_coexpression_id=412|UniProt=P18111|association_with_transcript=0bp_to_ENSMUST00000025521,NM_009880,uc008fbj.2_5end|description=CAGE_peak_2_at_Cdx1_5end|id=chr18:61195843..61195864,-|ontology_enrichment_celltype=CL:0002563!3.75e-10!9;CL:0002251!3.75e-10!9;CL:0000239!2.28e-07!6;CL:0000677!2.28e-07!6;CL:0000212!2.28e-07!6;CL:0000584!2.28e-07!6|ontology_enrichment_celltype_v019_2=CL:0002563,2.74e-15,9;CL:0002251,2.74e-15,9;CL:0000239,7.54e-11,6;CL:0000677,7.54e-11,6;CL:0000584,7.54e-11,6;CL:0000075,3.77e-09,7;CL:0002076,2.60e-08,15;CL:0000066,5.12e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!9.86e-20!43;UBERON:0005409!6.96e-17!59;UBERON:0000344!7.75e-16!15;UBERON:0001242!3.92e-14!13;UBERON:0000060!3.92e-14!13;UBERON:0001262!3.92e-14!13;UBERON:0004786!3.92e-14!13;UBERON:0004923!3.91e-11!24;UBERON:0003350!3.75e-10!9;UBERON:0004808!3.75e-10!9;UBERON:0001277!3.75e-10!9;UBERON:0000485!9.33e-08!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.82e-42,31;UBERON:0005409,4.05e-29,47;UBERON:0000344,2.17e-24,15;UBERON:0001242,1.16e-21,13;UBERON:0001262,1.16e-21,13;UBERON:0004786,1.16e-21,13;UBERON:0004923,1.88e-15,24;UBERON:0003350,2.74e-15,9;UBERON:0004808,2.74e-15,9;UBERON:0001277,2.74e-15,9;UBERON:0000485,4.14e-12,11;UBERON:0004119,1.44e-08,118;UBERON:0000925,1.44e-08,118;UBERON:0006595,1.44e-08,118;UBERON:0001007,3.77e-08,116;UBERON:0001555,3.77e-08,116;UBERON:0007026,3.77e-08,116;UBERON:0002108,4.08e-08,4;UBERON:0004921,5.60e-07,114|phase1_expression=0,26.1731555729521,38.6749353481106,36.9006337794333,43.0770327753859,41.2983008903249,38.7796983388573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7189240366637,20.6468352960453,45.3643251650866,50.8299155467708,33.1825698336269,49.2160656392008,40.5768508913488,51.2197479613754,0,0,0,25.9966457776147,39.5638455953212,32.6670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0.46081959976873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96622188184453,0,0,0,0,0,0,0,0,0,0,5.48082622651488,0,0,0,0,0,0,0,0.125666591329675,0.247194967734374,0,0,0,0,0,63.3731988141615,0,0,42.1504141094176,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0.215567992932842,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,14.8688452342709,19.0404407997752,0,0.696710015581316,7.60318021800351,12.3026950020239,14.2321948060717,20.1639163679313,27.9972146311262,23.2225526160855,23.6255096272253,19.4977342600328,24.5654749770091,33.2563181202062,38.904848977445,44.2093626624695,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604647113929502,0,0,0,5.16856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,1.90648863777438,0,0,0,0,0,0,33.5202962124328,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.40406943068342,0.209088296014469,0.87345025498471,0,0.0826534557253359,0,72.0659251502368,0,0,0,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0.13020438484395,0.104859344425711,0,0,0,0,0.205421914329655,0.51968329191118,0.358053391334963,0,0.600977247599844,0.147689527174577,0,0.15241361331,0.201652370273681,0.292373642219257,0.384847366561318,0.116876902181569,0,1.10992976687032,0.0897138566094757,1.67884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0.628839487883947,1.10306105070008,0,1.64828045791115,0.64183841918363,1.01078884705519,0.760437899670719,1.69763707247469,0.561849044819294,1.02440243847791,1.03383844120104,0.476293691283074,1.27472758539341,0.77163688185482,2.47251540481984,1.91358596174717,0.685738504770831,0.887379030796687,0.476872379894642,1.16277133305863,0.941093804153306,0.676916863133412,0.548783918618318,1.05227884575137,0.543216455383447,1.12228454331548,0.949080144993393,1.18205378850676,1.22769312950907,0.929621047115796,0.578719832943424,0,1.16965804222704,2.36358159453128,0,0,0|short_description=p2@Cdx1}} | ||
|EntrezGene=12590 | |||
|HGNC= | |||
|MCL_coexpression_id=412 | |||
|UniProt=P18111 | |||
|association_with_transcript=0bp_to_ENSMUST00000025521,NM_009880,uc008fbj.2_5end | |||
|description=CAGE_peak_2_at_Cdx1_5end | |||
|id=chr18:61195843..61195864,- | |||
|ontology_enrichment_celltype=CL:0002563!3.75e-10!9;CL:0002251!3.75e-10!9;CL:0000239!2.28e-07!6;CL:0000677!2.28e-07!6;CL:0000212!2.28e-07!6;CL:0000584!2.28e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.74e-15,9;CL:0002251,2.74e-15,9;CL:0000239,7.54e-11,6;CL:0000677,7.54e-11,6;CL:0000584,7.54e-11,6;CL:0000075,3.77e-09,7;CL:0002076,2.60e-08,15;CL:0000066,5.12e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.86e-20!43;UBERON:0005409!6.96e-17!59;UBERON:0000344!7.75e-16!15;UBERON:0001242!3.92e-14!13;UBERON:0000060!3.92e-14!13;UBERON:0001262!3.92e-14!13;UBERON:0004786!3.92e-14!13;UBERON:0004923!3.91e-11!24;UBERON:0003350!3.75e-10!9;UBERON:0004808!3.75e-10!9;UBERON:0001277!3.75e-10!9;UBERON:0000485!9.33e-08!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.82e-42,31;UBERON:0005409,4.05e-29,47;UBERON:0000344,2.17e-24,15;UBERON:0001242,1.16e-21,13;UBERON:0001262,1.16e-21,13;UBERON:0004786,1.16e-21,13;UBERON:0004923,1.88e-15,24;UBERON:0003350,2.74e-15,9;UBERON:0004808,2.74e-15,9;UBERON:0001277,2.74e-15,9;UBERON:0000485,4.14e-12,11;UBERON:0004119,1.44e-08,118;UBERON:0000925,1.44e-08,118;UBERON:0006595,1.44e-08,118;UBERON:0001007,3.77e-08,116;UBERON:0001555,3.77e-08,116;UBERON:0007026,3.77e-08,116;UBERON:0002108,4.08e-08,4;UBERON:0004921,5.60e-07,114 | |||
|phase1_expression=0,26.1731555729521,38.6749353481106,36.9006337794333,43.0770327753859,41.2983008903249,38.7796983388573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7189240366637,20.6468352960453,45.3643251650866,50.8299155467708,33.1825698336269,49.2160656392008,40.5768508913488,51.2197479613754,0,0,0,25.9966457776147,39.5638455953212,32.6670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0.46081959976873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96622188184453,0,0,0,0,0,0,0,0,0,0,5.48082622651488,0,0,0,0,0,0,0,0.125666591329675,0.247194967734374,0,0,0,0,0,63.3731988141615,0,0,42.1504141094176,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0.215567992932842,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,14.8688452342709,19.0404407997752,0,0.696710015581316,7.60318021800351,12.3026950020239,14.2321948060717,20.1639163679313,27.9972146311262,23.2225526160855,23.6255096272253,19.4977342600328,24.5654749770091,33.2563181202062,38.904848977445,44.2093626624695,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604647113929502,0,0,0,5.16856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,1.90648863777438,0,0,0,0,0,0,33.5202962124328,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.40406943068342,0.209088296014469,0.87345025498471,0,0.0826534557253359,0,72.0659251502368,0,0,0,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0.13020438484395,0.104859344425711,0,0,0,0,0.205421914329655,0.51968329191118,0.358053391334963,0,0.600977247599844,0.147689527174577,0,0.15241361331,0.201652370273681,0.292373642219257,0.384847366561318,0.116876902181569,0,1.10992976687032,0.0897138566094757,1.67884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0.628839487883947,1.10306105070008,0,1.64828045791115,0.64183841918363,1.01078884705519,0.760437899670719,1.69763707247469,0.561849044819294,1.02440243847791,1.03383844120104,0.476293691283074,1.27472758539341,0.77163688185482,2.47251540481984,1.91358596174717,0.685738504770831,0.887379030796687,0.476872379894642,1.16277133305863,0.941093804153306,0.676916863133412,0.548783918618318,1.05227884575137,0.543216455383447,1.12228454331548,0.949080144993393,1.18205378850676,1.22769312950907,0.929621047115796,0.578719832943424,0,1.16965804222704,2.36358159453128,0,0,0 | |||
|short_description=p2@Cdx1 | |||
}} |
Revision as of 16:29, 13 September 2013
Short description: | p2@Cdx1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cdx1_5end |
Coexpression cluster: | MCL_coexpression_mm9:412 |
Association with transcript: | 0bp_to_ENSMUST00000025521, NM_009880, uc008fbj.2_5end |
EntrezGene: | Cdx1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.74e-15 | 9 |
epithelial cell of alimentary canal | 2.74e-15 | 9 |
brush border epithelial cell | 7.54e-11 | 6 |
gut absorptive cell | 7.54e-11 | 6 |
enterocyte | 7.54e-11 | 6 |
columnar/cuboidal epithelial cell | 3.77e-09 | 7 |
endo-epithelial cell | 2.60e-08 | 15 |
epithelial cell | 5.12e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.82e-42 | 31 |
gastrointestinal system | 4.05e-29 | 47 |
mucosa | 2.17e-24 | 15 |
intestinal mucosa | 1.16e-21 | 13 |
wall of intestine | 1.16e-21 | 13 |
gastrointestinal system mucosa | 1.16e-21 | 13 |
organ component layer | 1.88e-15 | 24 |
epithelium of mucosa | 2.74e-15 | 9 |
gastrointestinal system epithelium | 2.74e-15 | 9 |
intestinal epithelium | 2.74e-15 | 9 |
simple columnar epithelium | 4.14e-12 | 11 |
endoderm-derived structure | 1.44e-08 | 118 |
endoderm | 1.44e-08 | 118 |
presumptive endoderm | 1.44e-08 | 118 |
digestive system | 3.77e-08 | 116 |
digestive tract | 3.77e-08 | 116 |
primitive gut | 3.77e-08 | 116 |
small intestine | 4.08e-08 | 4 |
subdivision of digestive tract | 5.60e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.