FFCP PHASE1:Mm9::chr3:107688852..107688857,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=574|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:107688852..107688857,+|id=chr3:107688852..107688857,+|ontology_enrichment_celltype=CL:0002563!1.47e-13!9;CL:0002251!1.47e-13!9;CL:0000239!4.73e-10!6;CL:0000677!4.73e-10!6;CL:0000212!4.73e-10!6;CL:0000584!4.73e-10!6;CL:0000075!1.84e-08!7;CL:0002076!2.76e-07!15;CL:0000066!6.07e-07!25|ontology_enrichment_celltype_v019_2=CL:0000682,1.55e-12,3;CL:0000239,5.00e-11,6;CL:0000677,5.00e-11,6;CL:0000584,5.00e-11,6;CL:0000075,1.80e-09,7;CL:0002563,2.16e-07,9;CL:0002251,2.16e-07,9;CL:0000066,4.09e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.53e-27!43;UBERON:0005409!7.06e-27!59;UBERON:0000344!3.73e-21!15;UBERON:0001242!1.95e-18!13;UBERON:0000060!1.95e-18!13;UBERON:0001262!1.95e-18!13;UBERON:0004786!1.95e-18!13;UBERON:0003350!1.47e-13!9;UBERON:0004808!1.47e-13!9;UBERON:0001277!1.47e-13!9;UBERON:0004923!1.74e-13!24;UBERON:0000485!1.07e-10!11;UBERON:0001007!1.84e-08!128;UBERON:0001555!1.84e-08!128;UBERON:0007026!1.84e-08!128;UBERON:0004119!3.52e-08!130;UBERON:0000925!3.52e-08!130;UBERON:0006595!3.52e-08!130;UBERON:0004921!2.75e-07!126;UBERON:0004185!2.75e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.00e-31,31;UBERON:0005409,1.28e-22,47;UBERON:0001155,3.24e-09,2;UBERON:0000059,3.24e-09,2;UBERON:0000344,3.67e-09,15;UBERON:0001007,1.73e-08,116;UBERON:0001555,1.73e-08,116;UBERON:0007026,1.73e-08,116;UBERON:0004119,2.72e-08,118;UBERON:0000925,2.72e-08,118;UBERON:0006595,2.72e-08,118;UBERON:0001242,1.27e-07,13;UBERON:0001262,1.27e-07,13;UBERON:0004786,1.27e-07,13;UBERON:0004921,1.42e-07,114;UBERON:0003350,2.16e-07,9;UBERON:0004808,2.16e-07,9;UBERON:0001277,2.16e-07,9;UBERON:0004923,2.33e-07,24|phase1_expression=0,1.04692622291808,1.81999695755814,3.32710632437513,5.00895729946347,0.839396359559449,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.799962113967033,1.60586496747019,1.14846392823004,2.58457197695445,2.37018355954478,1.90023419456374,0.756090389279792,0.221730510655305,0,0,0,0.577703239502549,0.498703936075477,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,1.23597483867187,0,0,0.161766849947409,0.220841518460394,0,1.86391761218122,0,0,3.83185582812887,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0,0,0.330418782983798,1.05780226665418,0,0,0.644337306610467,0.403367049246685,0.667134131534611,0.190225626112559,2.37264530772256,0.823494773620054,5.52937459360593,2.38747766449381,1.75467678407208,5.39291645192533,4.10662294761919,3.98282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,0.218362563746178,0,0.165306911450672,0.26175594198403,3.49960427887841,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.183843508450014,0,0,0,0,0,0.188626341386076,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0,0,0,0.238436189947321,0.145346416632329,0,0.169229215783353,0,0,0.271608227691724,0,0.118635018124174,0.197008964751127,0,0,0,0,0,0,0,0,0|short_description=p@chr3:107688852..107688857,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=574 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:107688852..107688857,+ | |||
|id=chr3:107688852..107688857,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.47e-13!9;CL:0002251!1.47e-13!9;CL:0000239!4.73e-10!6;CL:0000677!4.73e-10!6;CL:0000212!4.73e-10!6;CL:0000584!4.73e-10!6;CL:0000075!1.84e-08!7;CL:0002076!2.76e-07!15;CL:0000066!6.07e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,1.55e-12,3;CL:0000239,5.00e-11,6;CL:0000677,5.00e-11,6;CL:0000584,5.00e-11,6;CL:0000075,1.80e-09,7;CL:0002563,2.16e-07,9;CL:0002251,2.16e-07,9;CL:0000066,4.09e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.53e-27!43;UBERON:0005409!7.06e-27!59;UBERON:0000344!3.73e-21!15;UBERON:0001242!1.95e-18!13;UBERON:0000060!1.95e-18!13;UBERON:0001262!1.95e-18!13;UBERON:0004786!1.95e-18!13;UBERON:0003350!1.47e-13!9;UBERON:0004808!1.47e-13!9;UBERON:0001277!1.47e-13!9;UBERON:0004923!1.74e-13!24;UBERON:0000485!1.07e-10!11;UBERON:0001007!1.84e-08!128;UBERON:0001555!1.84e-08!128;UBERON:0007026!1.84e-08!128;UBERON:0004119!3.52e-08!130;UBERON:0000925!3.52e-08!130;UBERON:0006595!3.52e-08!130;UBERON:0004921!2.75e-07!126;UBERON:0004185!2.75e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.00e-31,31;UBERON:0005409,1.28e-22,47;UBERON:0001155,3.24e-09,2;UBERON:0000059,3.24e-09,2;UBERON:0000344,3.67e-09,15;UBERON:0001007,1.73e-08,116;UBERON:0001555,1.73e-08,116;UBERON:0007026,1.73e-08,116;UBERON:0004119,2.72e-08,118;UBERON:0000925,2.72e-08,118;UBERON:0006595,2.72e-08,118;UBERON:0001242,1.27e-07,13;UBERON:0001262,1.27e-07,13;UBERON:0004786,1.27e-07,13;UBERON:0004921,1.42e-07,114;UBERON:0003350,2.16e-07,9;UBERON:0004808,2.16e-07,9;UBERON:0001277,2.16e-07,9;UBERON:0004923,2.33e-07,24 | |||
|phase1_expression=0,1.04692622291808,1.81999695755814,3.32710632437513,5.00895729946347,0.839396359559449,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0.799962113967033,1.60586496747019,1.14846392823004,2.58457197695445,2.37018355954478,1.90023419456374,0.756090389279792,0.221730510655305,0,0,0,0.577703239502549,0.498703936075477,0.612508068787107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,1.23597483867187,0,0,0.161766849947409,0.220841518460394,0,1.86391761218122,0,0,3.83185582812887,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0,0,0.330418782983798,1.05780226665418,0,0,0.644337306610467,0.403367049246685,0.667134131534611,0.190225626112559,2.37264530772256,0.823494773620054,5.52937459360593,2.38747766449381,1.75467678407208,5.39291645192533,4.10662294761919,3.98282546508734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,0.218362563746178,0,0.165306911450672,0.26175594198403,3.49960427887841,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0.183843508450014,0,0,0,0,0,0.188626341386076,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0,0,0,0.238436189947321,0.145346416632329,0,0.169229215783353,0,0,0.271608227691724,0,0.118635018124174,0.197008964751127,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:107688852..107688857,+ | |||
}} |
Revision as of 01:12, 14 September 2013
Short description: | p@chr3:107688852..107688857, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:107688852..107688857, + |
Coexpression cluster: | MCL_coexpression_mm9:574 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 1.55e-12 | 3 |
brush border epithelial cell | 5.00e-11 | 6 |
gut absorptive cell | 5.00e-11 | 6 |
enterocyte | 5.00e-11 | 6 |
columnar/cuboidal epithelial cell | 1.80e-09 | 7 |
intestinal epithelial cell | 2.16e-07 | 9 |
epithelial cell of alimentary canal | 2.16e-07 | 9 |
epithelial cell | 4.09e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.00e-31 | 31 |
gastrointestinal system | 1.28e-22 | 47 |
colon | 3.24e-09 | 2 |
large intestine | 3.24e-09 | 2 |
mucosa | 3.67e-09 | 15 |
digestive system | 1.73e-08 | 116 |
digestive tract | 1.73e-08 | 116 |
primitive gut | 1.73e-08 | 116 |
endoderm-derived structure | 2.72e-08 | 118 |
endoderm | 2.72e-08 | 118 |
presumptive endoderm | 2.72e-08 | 118 |
intestinal mucosa | 1.27e-07 | 13 |
wall of intestine | 1.27e-07 | 13 |
gastrointestinal system mucosa | 1.27e-07 | 13 |
subdivision of digestive tract | 1.42e-07 | 114 |
epithelium of mucosa | 2.16e-07 | 9 |
gastrointestinal system epithelium | 2.16e-07 | 9 |
intestinal epithelium | 2.16e-07 | 9 |
organ component layer | 2.33e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.