FFCP PHASE1:Mm9::chr6:78330715..78330733,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19694|HGNC=|MCL_coexpression_id=460|UniProt=O09037,Q794C6|association_with_transcript=12bp_to_ENSMUST00000101272,NM_011259,uc009cjy.1_5end|description=CAGE_peak_3_at_Reg3a_5end|id=chr6:78330715..78330733,+|ontology_enrichment_celltype=CL:0000239!2.98e-16!6;CL:0000677!2.98e-16!6;CL:0000212!2.98e-16!6;CL:0000584!2.98e-16!6;CL:0002563!3.34e-14!9;CL:0002251!3.34e-14!9;CL:0000075!7.56e-14!7;CL:0000066!2.11e-09!25;CL:0000473!2.67e-09!3;CL:0000627!2.67e-09!3;CL:0000682!2.67e-09!3;CL:0002076!3.74e-08!15|ontology_enrichment_celltype_v019_2=CL:0000239,1.93e-15,6;CL:0000677,1.93e-15,6;CL:0000584,1.93e-15,6;CL:0000075,3.23e-13,7;CL:0000682,5.12e-12,3;CL:0002563,3.02e-10,9;CL:0002251,3.02e-10,9;CL:0000066,1.42e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!8.10e-34!43;UBERON:0000344!9.48e-30!15;UBERON:0001242!2.86e-24!13;UBERON:0000060!2.86e-24!13;UBERON:0001262!2.86e-24!13;UBERON:0004786!2.86e-24!13;UBERON:0005409!2.78e-23!59;UBERON:0004923!1.45e-17!24;UBERON:0003350!3.34e-14!9;UBERON:0004808!3.34e-14!9;UBERON:0001277!3.34e-14!9;UBERON:0002108!1.94e-13!16;UBERON:0000485!1.87e-11!11;UBERON:0001007!4.34e-10!128;UBERON:0001555!4.34e-10!128;UBERON:0007026!4.34e-10!128;UBERON:0004119!7.53e-10!130;UBERON:0000925!7.53e-10!130;UBERON:0006595!7.53e-10!130;UBERON:0000331!8.71e-10!3;UBERON:0002116!8.71e-10!3;UBERON:0001204!8.71e-10!3;UBERON:0001168!8.71e-10!3;UBERON:0004921!3.36e-08!126;UBERON:0004185!3.36e-08!126;UBERON:0001962!3.61e-07!2;UBERON:0001961!3.61e-07!2;UBERON:0001744!3.61e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.72e-25,31;UBERON:0000344,2.59e-24,15;UBERON:0001242,7.62e-18,13;UBERON:0001262,7.62e-18,13;UBERON:0004786,7.62e-18,13;UBERON:0002108,5.75e-16,4;UBERON:0005409,6.60e-16,47;UBERON:0004923,1.34e-14,24;UBERON:0000331,1.13e-12,3;UBERON:0002116,1.13e-12,3;UBERON:0001204,1.13e-12,3;UBERON:0001168,1.13e-12,3;UBERON:0003350,3.02e-10,9;UBERON:0004808,3.02e-10,9;UBERON:0001277,3.02e-10,9;UBERON:0001962,3.82e-09,2;UBERON:0001961,3.82e-09,2;UBERON:0001744,3.82e-09,2;UBERON:0000485,2.38e-08,11|phase1_expression=0,3.14077866875425,5.45999087267443,4.53696316960245,6.01074875935617,0.16787927191189,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.23970448894286,6.65286915094793,5.7423196411502,6.03066794622705,2.58565479223067,7.41091335879858,7.05684363327806,3.10422714917427,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.8755122697976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,6.61126416658861,0,0,0,0,0,0,6.64340686162316,0,0,0.198956472041151,0,5.39291645192533,6.70027954611552,5.37681437786791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98235415019888,0,0,0,0,0,0,0.363533729477506,0.712994756769443,7.9009189483954,265.654893608997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@Reg3a}} | ||
|EntrezGene=19694 | |||
|HGNC= | |||
|MCL_coexpression_id=460 | |||
|UniProt=O09037,Q794C6 | |||
|association_with_transcript=12bp_to_ENSMUST00000101272,NM_011259,uc009cjy.1_5end | |||
|description=CAGE_peak_3_at_Reg3a_5end | |||
|id=chr6:78330715..78330733,+ | |||
|ontology_enrichment_celltype=CL:0000239!2.98e-16!6;CL:0000677!2.98e-16!6;CL:0000212!2.98e-16!6;CL:0000584!2.98e-16!6;CL:0002563!3.34e-14!9;CL:0002251!3.34e-14!9;CL:0000075!7.56e-14!7;CL:0000066!2.11e-09!25;CL:0000473!2.67e-09!3;CL:0000627!2.67e-09!3;CL:0000682!2.67e-09!3;CL:0002076!3.74e-08!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.93e-15,6;CL:0000677,1.93e-15,6;CL:0000584,1.93e-15,6;CL:0000075,3.23e-13,7;CL:0000682,5.12e-12,3;CL:0002563,3.02e-10,9;CL:0002251,3.02e-10,9;CL:0000066,1.42e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!8.10e-34!43;UBERON:0000344!9.48e-30!15;UBERON:0001242!2.86e-24!13;UBERON:0000060!2.86e-24!13;UBERON:0001262!2.86e-24!13;UBERON:0004786!2.86e-24!13;UBERON:0005409!2.78e-23!59;UBERON:0004923!1.45e-17!24;UBERON:0003350!3.34e-14!9;UBERON:0004808!3.34e-14!9;UBERON:0001277!3.34e-14!9;UBERON:0002108!1.94e-13!16;UBERON:0000485!1.87e-11!11;UBERON:0001007!4.34e-10!128;UBERON:0001555!4.34e-10!128;UBERON:0007026!4.34e-10!128;UBERON:0004119!7.53e-10!130;UBERON:0000925!7.53e-10!130;UBERON:0006595!7.53e-10!130;UBERON:0000331!8.71e-10!3;UBERON:0002116!8.71e-10!3;UBERON:0001204!8.71e-10!3;UBERON:0001168!8.71e-10!3;UBERON:0004921!3.36e-08!126;UBERON:0004185!3.36e-08!126;UBERON:0001962!3.61e-07!2;UBERON:0001961!3.61e-07!2;UBERON:0001744!3.61e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.72e-25,31;UBERON:0000344,2.59e-24,15;UBERON:0001242,7.62e-18,13;UBERON:0001262,7.62e-18,13;UBERON:0004786,7.62e-18,13;UBERON:0002108,5.75e-16,4;UBERON:0005409,6.60e-16,47;UBERON:0004923,1.34e-14,24;UBERON:0000331,1.13e-12,3;UBERON:0002116,1.13e-12,3;UBERON:0001204,1.13e-12,3;UBERON:0001168,1.13e-12,3;UBERON:0003350,3.02e-10,9;UBERON:0004808,3.02e-10,9;UBERON:0001277,3.02e-10,9;UBERON:0001962,3.82e-09,2;UBERON:0001961,3.82e-09,2;UBERON:0001744,3.82e-09,2;UBERON:0000485,2.38e-08,11 | |||
|phase1_expression=0,3.14077866875425,5.45999087267443,4.53696316960245,6.01074875935617,0.16787927191189,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.23970448894286,6.65286915094793,5.7423196411502,6.03066794622705,2.58565479223067,7.41091335879858,7.05684363327806,3.10422714917427,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.8755122697976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,6.61126416658861,0,0,0,0,0,0,6.64340686162316,0,0,0.198956472041151,0,5.39291645192533,6.70027954611552,5.37681437786791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.98235415019888,0,0,0,0,0,0,0.363533729477506,0.712994756769443,7.9009189483954,265.654893608997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@Reg3a | |||
}} |
Revision as of 10:39, 14 September 2013
Short description: | p3@Reg3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Reg3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:460 |
Association with transcript: | 12bp_to_ENSMUST00000101272, NM_011259, uc009cjy.1_5end |
EntrezGene: | Reg3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.93e-15 | 6 |
gut absorptive cell | 1.93e-15 | 6 |
enterocyte | 1.93e-15 | 6 |
columnar/cuboidal epithelial cell | 3.23e-13 | 7 |
M cell of gut | 5.12e-12 | 3 |
intestinal epithelial cell | 3.02e-10 | 9 |
epithelial cell of alimentary canal | 3.02e-10 | 9 |
epithelial cell | 1.42e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.72e-25 | 31 |
mucosa | 2.59e-24 | 15 |
intestinal mucosa | 7.62e-18 | 13 |
wall of intestine | 7.62e-18 | 13 |
gastrointestinal system mucosa | 7.62e-18 | 13 |
small intestine | 5.75e-16 | 4 |
gastrointestinal system | 6.60e-16 | 47 |
organ component layer | 1.34e-14 | 24 |
ileal mucosa | 1.13e-12 | 3 |
ileum | 1.13e-12 | 3 |
mucosa of small intestine | 1.13e-12 | 3 |
wall of small intestine | 1.13e-12 | 3 |
epithelium of mucosa | 3.02e-10 | 9 |
gastrointestinal system epithelium | 3.02e-10 | 9 |
intestinal epithelium | 3.02e-10 | 9 |
gut-associated lymphoid tissue | 3.82e-09 | 2 |
mucosa-associated lymphoid tissue | 3.82e-09 | 2 |
lymphoid tissue | 3.82e-09 | 2 |
simple columnar epithelium | 2.38e-08 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.