FFCP PHASE1:Mm9::chr19:7044222..7044233,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18797|HGNC=|MCL_coexpression_id=24|UniProt=Q8CI86|association_with_transcript=8bp_to_NM_008874,uc008gjq.1,uc008gjr.1_5end|description=CAGE_peak_2_at_Plcb3_5end|id=chr19:7044222..7044233,-|ontology_enrichment_celltype=CL:0002563!3.76e-07!9;CL:0002251!3.76e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,1.15e-09,9;CL:0002251,1.15e-09,9;CL:0000239,2.64e-07,6;CL:0000677,2.64e-07,6;CL:0000584,2.64e-07,6;CL:0000066,4.11e-07,25;CL:0002076,5.42e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!8.03e-11!15;UBERON:0005409!8.15e-11!59;UBERON:0000160!3.91e-10!43;UBERON:0001242!1.21e-09!13;UBERON:0000060!1.21e-09!13;UBERON:0001262!1.21e-09!13;UBERON:0004786!1.21e-09!13;UBERON:0003350!3.76e-07!9;UBERON:0004808!3.76e-07!9;UBERON:0001277!3.76e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.87e-26,31;UBERON:0005409,1.14e-23,47;UBERON:0000344,5.70e-15,15;UBERON:0001242,2.88e-13,13;UBERON:0001262,2.88e-13,13;UBERON:0004786,2.88e-13,13;UBERON:0001007,2.41e-10,116;UBERON:0001555,2.41e-10,116;UBERON:0007026,2.41e-10,116;UBERON:0004119,7.29e-10,118;UBERON:0000925,7.29e-10,118;UBERON:0006595,7.29e-10,118;UBERON:0003350,1.15e-09,9;UBERON:0004808,1.15e-09,9;UBERON:0001277,1.15e-09,9;UBERON:0004921,2.70e-09,114;UBERON:0000485,2.65e-07,11;UBERON:0004923,4.13e-07,24|phase1_expression=0.320297694209588,34.1995899486574,34.5799421936047,58.0731285709114,58.6048004037226,15.4448930158939,11.4470193891808,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.595303031057488,0,0.261199789138935,10.0795226359846,12.6175104586944,24.6919744569459,27.9995297503399,20.2542958724736,16.9120843316173,23.1867719379136,9.75614246883341,0,1.23012957516914,0,11.2652131702997,9.80784407615105,8.37094360675713,0.418531630736908,1.5626706890476,0.523523743973798,0.588231488031014,0,0.485510353031154,0.503587271902309,0.506884656097573,0.550640256485045,3.12956537739216,2.18025156380447,0.659058548203415,0.388859798148567,1.67983705950435,0,0,0,0.336093799142464,1.54355661621568,2.86533439938757,2.57836046138721,0.404632921719196,0,0,1.0165335962074,0,1.7997994345628,2.96659908770092,0.7104801149461,3.59520132622086,2.30530983192933,0,0.270011876663381,0.420649922702764,1.14260393761521,0.662605622854841,0.244981598429908,0.383381884072945,0,0,0.127687338085188,0.307213066512487,0.131886287730194,0.0914876436024097,0,0.279182999001381,0,0.61119299110724,0.883885756421003,0.854230084794618,0.186399445825301,0.530083353332288,1.13357340160178,2.31891590961342,1.72084775396277,0,1.07940638327563,0,0,1.26399978118577,2.55645483867087,1.81850203222008,3.18005617059306,0.563373679106722,3.84979432242953,5.09610479413291,0,0.649473123033642,0.253359865475099,0,3.31133251185274,0.258937883647172,0.445326417194474,0.693941307064543,0.304465478312141,0.691846491768175,0.452167921657868,0.823120949949934,0.376999773989026,0.741584903203122,1.01219549843938,0,0,0.441683036920787,0,5.59175283654366,0.878342391034642,0.628340120440365,15.8383374229327,0.11981512450592,0,0,0.149790639404823,0,0.125654352112864,0.173824320192276,0,0.20778804455956,0.162241263067758,0.305518091550949,0.622034853050465,0,1.26265113531884,0.390361328888111,0.689706313300419,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.187403449119458,0.258703370739016,0.215567992932842,0.189106080167819,0.527853372491847,1.09597866213787,0.834141747676794,1.74126083261083,1.23469281844766,0.199034266818493,0,0,0,1.03562886267751,0,0.720248245844059,1.18372367792605,0.196764231747404,0,0,0,0.233530684734339,0.658239399653922,0.492502392237286,0.162137619091711,0.730999937126662,0.439100230582101,0.268412837520744,0.210289948564127,0.205809224758569,14.8688452342709,10.8424732332053,0.426576501070468,1.16118335930219,4.12375876230699,5.64713868945359,9.56225588532942,8.75037880117772,19.9302205848695,8.89374355509659,8.79673230800943,10.1467800740987,7.40863531052657,13.4822911298133,15.7780776408527,12.1476176685164,0.379335801906163,0.685491075658373,0,1.01825663922657,0.581857461502877,0.631222379012867,0.758838445491087,0.295220295959204,0.156998727841375,0.616985819609003,0.592905254174298,0.166845105716094,0.589676985339609,0,0,0.241177159752417,0.50925170356284,0.287696137450811,0,0.274561413188081,0,0.744281895337007,0.312037673114561,1.01031551178845,0.179397413521912,0,2.03228509183265,0,0.488894929326078,1.18821560042632,1.17345124144251,0.670025029767263,0.952174563544055,2.34160377429359,1.7339865851681,1.7717175171902,1.91345722388985,0.81931657357869,0.863424909329478,2.60368305446721,1.50791283939272,0,0.983528546038072,0,0,0.234423373184406,0.327869890753351,0,0.94652465824877,0.780877488593277,1.07711698866399,0.716906393857656,0.445597348164788,0.283076530788832,1.21443210502468,1.16902343164525,0.395287777946524,0,0.851640511249612,0.534196811001766,0.488660878060728,0.824850614862677,0,0.242780636154981,0,0,0.295301892880773,0,2.84271122485043,0.363533729477506,0,0,0,1.03135543248187,0.3404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| ||
|EntrezGene=18797 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=Q8CI86 | |||
|association_with_transcript=8bp_to_NM_008874,uc008gjq.1,uc008gjr.1_5end | |||
|description=CAGE_peak_2_at_Plcb3_5end | |||
|id=chr19:7044222..7044233,- | |||
|ontology_enrichment_celltype=CL:0002563!3.76e-07!9;CL:0002251!3.76e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.15e-09,9;CL:0002251,1.15e-09,9;CL:0000239,2.64e-07,6;CL:0000677,2.64e-07,6;CL:0000584,2.64e-07,6;CL:0000066,4.11e-07,25;CL:0002076,5.42e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!8.03e-11!15;UBERON:0005409!8.15e-11!59;UBERON:0000160!3.91e-10!43;UBERON:0001242!1.21e-09!13;UBERON:0000060!1.21e-09!13;UBERON:0001262!1.21e-09!13;UBERON:0004786!1.21e-09!13;UBERON:0003350!3.76e-07!9;UBERON:0004808!3.76e-07!9;UBERON:0001277!3.76e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.87e-26,31;UBERON:0005409,1.14e-23,47;UBERON:0000344,5.70e-15,15;UBERON:0001242,2.88e-13,13;UBERON:0001262,2.88e-13,13;UBERON:0004786,2.88e-13,13;UBERON:0001007,2.41e-10,116;UBERON:0001555,2.41e-10,116;UBERON:0007026,2.41e-10,116;UBERON:0004119,7.29e-10,118;UBERON:0000925,7.29e-10,118;UBERON:0006595,7.29e-10,118;UBERON:0003350,1.15e-09,9;UBERON:0004808,1.15e-09,9;UBERON:0001277,1.15e-09,9;UBERON:0004921,2.70e-09,114;UBERON:0000485,2.65e-07,11;UBERON:0004923,4.13e-07,24 | |||
|phase1_expression=0.320297694209588,34.1995899486574,34.5799421936047,58.0731285709114,58.6048004037226,15.4448930158939,11.4470193891808,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.595303031057488,0,0.261199789138935,10.0795226359846,12.6175104586944,24.6919744569459,27.9995297503399,20.2542958724736,16.9120843316173,23.1867719379136,9.75614246883341,0,1.23012957516914,0,11.2652131702997,9.80784407615105,8.37094360675713,0.418531630736908,1.5626706890476,0.523523743973798,0.588231488031014,0,0.485510353031154,0.503587271902309,0.506884656097573,0.550640256485045,3.12956537739216,2.18025156380447,0.659058548203415,0.388859798148567,1.67983705950435,0,0,0,0.336093799142464,1.54355661621568,2.86533439938757,2.57836046138721,0.404632921719196,0,0,1.0165335962074,0,1.7997994345628,2.96659908770092,0.7104801149461,3.59520132622086,2.30530983192933,0,0.270011876663381,0.420649922702764,1.14260393761521,0.662605622854841,0.244981598429908,0.383381884072945,0,0,0.127687338085188,0.307213066512487,0.131886287730194,0.0914876436024097,0,0.279182999001381,0,0.61119299110724,0.883885756421003,0.854230084794618,0.186399445825301,0.530083353332288,1.13357340160178,2.31891590961342,1.72084775396277,0,1.07940638327563,0,0,1.26399978118577,2.55645483867087,1.81850203222008,3.18005617059306,0.563373679106722,3.84979432242953,5.09610479413291,0,0.649473123033642,0.253359865475099,0,3.31133251185274,0.258937883647172,0.445326417194474,0.693941307064543,0.304465478312141,0.691846491768175,0.452167921657868,0.823120949949934,0.376999773989026,0.741584903203122,1.01219549843938,0,0,0.441683036920787,0,5.59175283654366,0.878342391034642,0.628340120440365,15.8383374229327,0.11981512450592,0,0,0.149790639404823,0,0.125654352112864,0.173824320192276,0,0.20778804455956,0.162241263067758,0.305518091550949,0.622034853050465,0,1.26265113531884,0.390361328888111,0.689706313300419,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.187403449119458,0.258703370739016,0.215567992932842,0.189106080167819,0.527853372491847,1.09597866213787,0.834141747676794,1.74126083261083,1.23469281844766,0.199034266818493,0,0,0,1.03562886267751,0,0.720248245844059,1.18372367792605,0.196764231747404,0,0,0,0.233530684734339,0.658239399653922,0.492502392237286,0.162137619091711,0.730999937126662,0.439100230582101,0.268412837520744,0.210289948564127,0.205809224758569,14.8688452342709,10.8424732332053,0.426576501070468,1.16118335930219,4.12375876230699,5.64713868945359,9.56225588532942,8.75037880117772,19.9302205848695,8.89374355509659,8.79673230800943,10.1467800740987,7.40863531052657,13.4822911298133,15.7780776408527,12.1476176685164,0.379335801906163,0.685491075658373,0,1.01825663922657,0.581857461502877,0.631222379012867,0.758838445491087,0.295220295959204,0.156998727841375,0.616985819609003,0.592905254174298,0.166845105716094,0.589676985339609,0,0,0.241177159752417,0.50925170356284,0.287696137450811,0,0.274561413188081,0,0.744281895337007,0.312037673114561,1.01031551178845,0.179397413521912,0,2.03228509183265,0,0.488894929326078,1.18821560042632,1.17345124144251,0.670025029767263,0.952174563544055,2.34160377429359,1.7339865851681,1.7717175171902,1.91345722388985,0.81931657357869,0.863424909329478,2.60368305446721,1.50791283939272,0,0.983528546038072,0,0,0.234423373184406,0.327869890753351,0,0.94652465824877,0.780877488593277,1.07711698866399,0.716906393857656,0.445597348164788,0.283076530788832,1.21443210502468,1.16902343164525,0.395287777946524,0,0.851640511249612,0.534196811001766,0.488660878060728,0.824850614862677,0,0.242780636154981,0,0,0.295301892880773,0,2.84271122485043,0.363533729477506,0,0,0,1.03135543248187,0.340439605753788,0.36012218806262,0.388076051348264,0.214337035031592,0.532020700926821,0.356737635204141,0.658196082408484,0.913394847343798,0,0.42366414172764,1.32317038832977,0.32977250588296,0.807322133479528,1.14594557363496,1.07435109602823,1.64140899745061,14.2825609948627,0.18542530201051,0,0.82554747185289,0,0.565105371014073,0.27338845544205,0,0.169978429993855,0.139951452323658,0.138199973804424,4.77335309007557,0.632671987162271,1.42323626988794,2.59212817972323,1.67270636811575,1.74690050996942,1.21377911746339,1.81837602595739,1.57053565190418,4.14767914533737,0,1.69107881605257,1.19613236835183,0.496375471371293,0.194451188344048,0.516639293910924,0,0.234714477291508,0.5208175393758,0.209718688851422,0,0.288030006257865,0,0.202725215290164,0.513554785824136,0,0.179026695667481,0,0,0.147689527174577,0,0,0.100826185136841,0,0,0,0.453460767230423,0.443971906748129,0.717710852875806,0.335769232728157,0.965947970160952,0.750729901804728,1.46521299413812,1.92931541171159,1.00314420807073,0,0,0.572895513439397,0.343706364687375,0,0,0,0,0,1.03552062350364,0,1.19707462020309,0.512200817262403,0.486213434136588,0.209613162627982,1.47074806760011,0.666740183404846,1.03017528619447,1.92551525755089,1.76888048234658,1.01391719956096,0.377252682772152,1.31098110457835,1.47257850531199,0.746661096422973,0.476293691283074,1.27472758539341,0.578727661391115,0,1.03039244094078,1.02860775715625,0.354951612318675,0.715308569841963,1.16277133305863,1.41164070622996,1.35383372626682,1.09756783723664,1.05227884575137,0.407412341537585,0.561142271657738,1.77952527186261,0.591026894253381,0.818462086339379,1.39443157067369,0.385813221962283,0.749431733813838,1.40358965067245,1.28922632428979,0.382576664137687,0.661774257358546,0.927471342481686 | |||
|short_description=p2@Plcb3 | |||
}} | |||
Revision as of 18:23, 13 September 2013
| Short description: | p2@Plcb3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Plcb3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:24 |
| Association with transcript: | 8bp_to_NM_008874, uc008gjq.1, uc008gjr.1_5end |
| EntrezGene: | Plcb3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 1.15e-09 | 9 |
| epithelial cell of alimentary canal | 1.15e-09 | 9 |
| brush border epithelial cell | 2.64e-07 | 6 |
| gut absorptive cell | 2.64e-07 | 6 |
| enterocyte | 2.64e-07 | 6 |
| epithelial cell | 4.11e-07 | 25 |
| endo-epithelial cell | 5.42e-07 | 15 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 9.87e-26 | 31 |
| gastrointestinal system | 1.14e-23 | 47 |
| mucosa | 5.70e-15 | 15 |
| intestinal mucosa | 2.88e-13 | 13 |
| wall of intestine | 2.88e-13 | 13 |
| gastrointestinal system mucosa | 2.88e-13 | 13 |
| digestive system | 2.41e-10 | 116 |
| digestive tract | 2.41e-10 | 116 |
| primitive gut | 2.41e-10 | 116 |
| endoderm-derived structure | 7.29e-10 | 118 |
| endoderm | 7.29e-10 | 118 |
| presumptive endoderm | 7.29e-10 | 118 |
| epithelium of mucosa | 1.15e-09 | 9 |
| gastrointestinal system epithelium | 1.15e-09 | 9 |
| intestinal epithelium | 1.15e-09 | 9 |
| subdivision of digestive tract | 2.70e-09 | 114 |
| simple columnar epithelium | 2.65e-07 | 11 |
| organ component layer | 4.13e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
