FFCP PHASE1:Mm9::chr8:93340889..93340916,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=205|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr8:93340889..93340916,-|id=chr8:93340889..93340916,-|ontology_enrichment_celltype=CL:0002453!2.43e-08!8;CL:0000333!1.72e-07!10;CL:0000095!1.72e-07!10;CL:0000243!1.72e-07!10;CL:0000123!1.72e-07!10;CL:0000125!1.72e-07!10;CL:0000030!1.72e-07!10;CL:0000339!1.72e-07!10|ontology_enrichment_celltype_v019_2=CL:0002453,5.59e-20,8;CL:0000333,8.95e-16,10;CL:0000095,8.95e-16,10;CL:0000243,8.95e-16,10;CL:0000123,8.95e-16,10;CL:0000125,8.95e-16,10;CL:0000030,8.95e-16,10;CL:0000339,8.95e-16,10;CL:0000128,5.69e-14,6;CL:0000126,5.69e-14,6;CL:0000127,5.69e-14,6;CL:0002319,1.06e-11,43;CL:0000221,2.28e-11,44;CL:0000133,2.28e-11,44;CL:0002614,4.58e-10,3;CL:0002610,1.29e-09,3;CL:0002605,7.99e-08,2;CL:0002604,7.99e-08,2;CL:0000878,9.26e-08,2;CL:0000129,9.26e-08,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.48e-10!75;UBERON:0001016!3.48e-10!75;UBERON:0001017!3.92e-10!73;UBERON:0005743!3.92e-10!73;UBERON:0003076!4.31e-08!12;UBERON:0003057!4.31e-08!12;UBERON:0001049!5.57e-08!52;UBERON:0005068!5.57e-08!52;UBERON:0006241!5.57e-08!52;UBERON:0007135!5.57e-08!52;UBERON:0002298!1.62e-07!6;UBERON:0002616!2.10e-07!49;UBERON:0000955!4.08e-07!50;UBERON:0006238!4.08e-07!50|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.56e-14,73;UBERON:0001016,8.08e-14,75;UBERON:0000073,1.37e-12,54;UBERON:0002950,2.20e-12,4;UBERON:0001891,2.20e-12,4;UBERON:0009616,2.20e-12,4;UBERON:0010286,2.20e-12,4;UBERON:0002038,4.58e-10,3;UBERON:0009663,4.58e-10,3;UBERON:0009661,4.58e-10,3;UBERON:0000125,4.58e-10,3;UBERON:0002308,4.58e-10,3;UBERON:0004121,5.53e-10,95;UBERON:0000924,5.53e-10,95;UBERON:0006601,5.53e-10,95;UBERON:0004684,1.29e-09,3;UBERON:0002275,1.29e-09,3;UBERON:0002616,1.48e-08,46;UBERON:0001049,1.63e-08,52;UBERON:0005068,1.63e-08,52;UBERON:0006241,1.63e-08,52;UBERON:0007135,1.63e-08,52;UBERON:0000955,2.55e-08,47;UBERON:0006238,2.55e-08,47|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2239873540553,43.2781779986909,30.3310642555882,10.7789544651529,15.8127820801469,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,1.77858959222228,0,0.988866362566974,0,14.3808053048834,47.6430698598728,0,0,0,0.571301968807607,1.10434270475807,0,0,0,2.20231761998777,1.14918604276669,1.99688493233117,0,0,0,3.07101298901519,3.37657566019008,1.83357897332172,0.883885756421003,0.996601765593721,0,0,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,1.25668024088073,0,0,0,0,1.04853447583376,0.457500602818626,0.251308704225729,0.521472960576829,0.255715457330331,1.0389402227978,0.648965052271031,0,0.373220911830279,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,1.26173969138476,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03228509183265,0,0,0,0,0,0.476087281772027,0.195133647857799,0.630540576424764,0.8858587585951,0.159454768657487,1.63863314715738,1.89953480052485,3.7608755231193,0,0,0,0,2.24770825982909,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0,1.27746076687442,0,0,1.64970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0.100966449948148,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0.36630324853453,0,0,1.12950368523413,0,0,0,0,0,1.35004500046361,0,0,0,0,0,0,0,0,0.183843508450014,0.666740183404846,1.03017528619447,0.320919209591815,0,0.50695859978048,1.13175804831646,0.655490552289177,0.512201219238954,0.631790158511746,0,0.115884325944855,0.578727661391115,0.412085900803307,0.441596760403192,0.342869252385415,0.70990322463735,0.953744759789284,0.145346416632329,0.282328141245992,0.676916863133412,0.365855945745545,0,0.679020569229309,0,0.237270036248348,0.197008964751127,0.409231043169689,0.619747364743864,0,0.499621155875892,0.233931608445408,0.429742108096597,0.191288332068843,0,0|short_description=p@chr8:93340889..93340916,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=205 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr8:93340889..93340916,- | |||
|id=chr8:93340889..93340916,- | |||
|ontology_enrichment_celltype=CL:0002453!2.43e-08!8;CL:0000333!1.72e-07!10;CL:0000095!1.72e-07!10;CL:0000243!1.72e-07!10;CL:0000123!1.72e-07!10;CL:0000125!1.72e-07!10;CL:0000030!1.72e-07!10;CL:0000339!1.72e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,5.59e-20,8;CL:0000333,8.95e-16,10;CL:0000095,8.95e-16,10;CL:0000243,8.95e-16,10;CL:0000123,8.95e-16,10;CL:0000125,8.95e-16,10;CL:0000030,8.95e-16,10;CL:0000339,8.95e-16,10;CL:0000128,5.69e-14,6;CL:0000126,5.69e-14,6;CL:0000127,5.69e-14,6;CL:0002319,1.06e-11,43;CL:0000221,2.28e-11,44;CL:0000133,2.28e-11,44;CL:0002614,4.58e-10,3;CL:0002610,1.29e-09,3;CL:0002605,7.99e-08,2;CL:0002604,7.99e-08,2;CL:0000878,9.26e-08,2;CL:0000129,9.26e-08,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.48e-10!75;UBERON:0001016!3.48e-10!75;UBERON:0001017!3.92e-10!73;UBERON:0005743!3.92e-10!73;UBERON:0003076!4.31e-08!12;UBERON:0003057!4.31e-08!12;UBERON:0001049!5.57e-08!52;UBERON:0005068!5.57e-08!52;UBERON:0006241!5.57e-08!52;UBERON:0007135!5.57e-08!52;UBERON:0002298!1.62e-07!6;UBERON:0002616!2.10e-07!49;UBERON:0000955!4.08e-07!50;UBERON:0006238!4.08e-07!50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.56e-14,73;UBERON:0001016,8.08e-14,75;UBERON:0000073,1.37e-12,54;UBERON:0002950,2.20e-12,4;UBERON:0001891,2.20e-12,4;UBERON:0009616,2.20e-12,4;UBERON:0010286,2.20e-12,4;UBERON:0002038,4.58e-10,3;UBERON:0009663,4.58e-10,3;UBERON:0009661,4.58e-10,3;UBERON:0000125,4.58e-10,3;UBERON:0002308,4.58e-10,3;UBERON:0004121,5.53e-10,95;UBERON:0000924,5.53e-10,95;UBERON:0006601,5.53e-10,95;UBERON:0004684,1.29e-09,3;UBERON:0002275,1.29e-09,3;UBERON:0002616,1.48e-08,46;UBERON:0001049,1.63e-08,52;UBERON:0005068,1.63e-08,52;UBERON:0006241,1.63e-08,52;UBERON:0007135,1.63e-08,52;UBERON:0000955,2.55e-08,47;UBERON:0006238,2.55e-08,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935476191661768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2239873540553,43.2781779986909,30.3310642555882,10.7789544651529,15.8127820801469,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,1.77858959222228,0,0.988866362566974,0,14.3808053048834,47.6430698598728,0,0,0,0.571301968807607,1.10434270475807,0,0,0,2.20231761998777,1.14918604276669,1.99688493233117,0,0,0,3.07101298901519,3.37657566019008,1.83357897332172,0.883885756421003,0.996601765593721,0,0,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,1.25668024088073,0,0,0,0,1.04853447583376,0.457500602818626,0.251308704225729,0.521472960576829,0.255715457330331,1.0389402227978,0.648965052271031,0,0.373220911830279,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,1.26173969138476,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03228509183265,0,0,0,0,0,0.476087281772027,0.195133647857799,0.630540576424764,0.8858587585951,0.159454768657487,1.63863314715738,1.89953480052485,3.7608755231193,0,0,0,0,2.24770825982909,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,0,1.27746076687442,0,0,1.64970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0.100966449948148,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0.36630324853453,0,0,1.12950368523413,0,0,0,0,0,1.35004500046361,0,0,0,0,0,0,0,0,0.183843508450014,0.666740183404846,1.03017528619447,0.320919209591815,0,0.50695859978048,1.13175804831646,0.655490552289177,0.512201219238954,0.631790158511746,0,0.115884325944855,0.578727661391115,0.412085900803307,0.441596760403192,0.342869252385415,0.70990322463735,0.953744759789284,0.145346416632329,0.282328141245992,0.676916863133412,0.365855945745545,0,0.679020569229309,0,0.237270036248348,0.197008964751127,0.409231043169689,0.619747364743864,0,0.499621155875892,0.233931608445408,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p@chr8:93340889..93340916,- | |||
}} |
Revision as of 16:25, 14 September 2013
Short description: | p@chr8:93340889..93340916, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:93340889..93340916, - |
Coexpression cluster: | MCL_coexpression_mm9:205 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 5.59e-20 | 8 |
migratory neural crest cell | 8.95e-16 | 10 |
neuron associated cell | 8.95e-16 | 10 |
glial cell (sensu Vertebrata) | 8.95e-16 | 10 |
neuron associated cell (sensu Vertebrata) | 8.95e-16 | 10 |
glial cell | 8.95e-16 | 10 |
glioblast | 8.95e-16 | 10 |
glioblast (sensu Vertebrata) | 8.95e-16 | 10 |
oligodendrocyte | 5.69e-14 | 6 |
macroglial cell | 5.69e-14 | 6 |
astrocyte | 5.69e-14 | 6 |
neural cell | 1.06e-11 | 43 |
ectodermal cell | 2.28e-11 | 44 |
neurectodermal cell | 2.28e-11 | 44 |
neuron of the substantia nigra | 4.58e-10 | 3 |
raphe nuclei neuron | 1.29e-09 | 3 |
astrocyte of the cerebral cortex | 7.99e-08 | 2 |
astrocyte of the hippocampus | 7.99e-08 | 2 |
central nervous system macrophage | 9.26e-08 | 2 |
microglial cell | 9.26e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.56e-14 | 73 |
nervous system | 8.08e-14 | 75 |
regional part of nervous system | 1.37e-12 | 54 |
regional part of midbrain | 2.20e-12 | 4 |
midbrain | 2.20e-12 | 4 |
presumptive midbrain | 2.20e-12 | 4 |
midbrain neural tube | 2.20e-12 | 4 |
substantia nigra | 4.58e-10 | 3 |
telencephalic nucleus | 4.58e-10 | 3 |
midbrain nucleus | 4.58e-10 | 3 |
neural nucleus | 4.58e-10 | 3 |
nucleus of brain | 4.58e-10 | 3 |
ectoderm-derived structure | 5.53e-10 | 95 |
ectoderm | 5.53e-10 | 95 |
presumptive ectoderm | 5.53e-10 | 95 |
raphe nuclei | 1.29e-09 | 3 |
reticular formation | 1.29e-09 | 3 |
regional part of brain | 1.48e-08 | 46 |
neural tube | 1.63e-08 | 52 |
neural rod | 1.63e-08 | 52 |
future spinal cord | 1.63e-08 | 52 |
neural keel | 1.63e-08 | 52 |
brain | 2.55e-08 | 47 |
future brain | 2.55e-08 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.