FFCP PHASE1:Mm9::chr3:158560571..158560574,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=397|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:158560571..158560574,+|id=chr3:158560571..158560574,+|ontology_enrichment_celltype=CL:0000239!2.13e-10!6;CL:0000677!2.13e-10!6;CL:0000212!2.13e-10!6;CL:0000584!2.13e-10!6;CL:0000075!7.57e-09!7;CL:0000473!1.14e-08!3;CL:0000627!1.14e-08!3;CL:0000682!1.14e-08!3;CL:0002563!8.89e-07!9;CL:0002251!8.89e-07!9|ontology_enrichment_celltype_v019_2=CL:0000239,2.45e-21,6;CL:0000677,2.45e-21,6;CL:0000584,2.45e-21,6;CL:0000075,2.73e-18,7;CL:0000682,4.51e-17,3;CL:0002563,3.22e-14,9;CL:0002251,3.22e-14,9;CL:0000066,1.35e-12,25;CL:0002076,1.72e-08,15;CL:0000473,1.32e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,8.73e-08,3;DOID:4045,8.73e-08,3|ontology_enrichment_uberon=UBERON:0000344!2.94e-18!15;UBERON:0001242!6.38e-14!13;UBERON:0000060!6.38e-14!13;UBERON:0001262!6.38e-14!13;UBERON:0004786!6.38e-14!13;UBERON:0004923!1.80e-10!24;UBERON:0000331!3.28e-08!3;UBERON:0002116!3.28e-08!3;UBERON:0001204!3.28e-08!3;UBERON:0001168!3.28e-08!3;UBERON:0003350!8.89e-07!9;UBERON:0004808!8.89e-07!9;UBERON:0001277!8.89e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.50e-33,15;UBERON:0001242,2.05e-24,13;UBERON:0001262,2.05e-24,13;UBERON:0004786,2.05e-24,13;UBERON:0004923,1.64e-20,24;UBERON:0000331,4.47e-16,3;UBERON:0002116,4.47e-16,3;UBERON:0001204,4.47e-16,3;UBERON:0001168,4.47e-16,3;UBERON:0003350,3.22e-14,9;UBERON:0004808,3.22e-14,9;UBERON:0001277,3.22e-14,9;UBERON:0001962,2.99e-12,2;UBERON:0001961,2.99e-12,2;UBERON:0001744,2.99e-12,2;UBERON:0002108,3.32e-12,4;UBERON:0000485,1.28e-11,11;UBERON:0000160,9.68e-10,31;UBERON:0002465,1.89e-08,3;UBERON:0003199,5.73e-07,1|phase1_expression=0,3.14077866875425,3.18499467572675,0,1.00179145989269,1.17515490338323,3.73780224952841,0,0,0,0,0,0,0,0,0,0,1.10411757875383,0.959801035240171,0.42438965179803,0,0,0,10.8794847499517,15.1410125504332,7.46501553349526,6.46142994238612,5.817723282519,1.71021077510736,1.00812051903972,6.43018480900384,0,0,0,0,0,0,1.67412652294763,0,2.61761871986899,0.588231488031014,1.36609096991689,0.485510353031154,0,0,0,0,0,0,0,0,0,0.503347818173209,0,0,0,0,0,0,0,0,0,0.889294796111139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0.508280908292259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.257347907114715,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0.667134131534611,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0,0.134864346384821,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0|short_description=p@chr3:158560571..158560574,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=397 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:158560571..158560574,+ | |||
|id=chr3:158560571..158560574,+ | |||
|ontology_enrichment_celltype=CL:0000239!2.13e-10!6;CL:0000677!2.13e-10!6;CL:0000212!2.13e-10!6;CL:0000584!2.13e-10!6;CL:0000075!7.57e-09!7;CL:0000473!1.14e-08!3;CL:0000627!1.14e-08!3;CL:0000682!1.14e-08!3;CL:0002563!8.89e-07!9;CL:0002251!8.89e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.45e-21,6;CL:0000677,2.45e-21,6;CL:0000584,2.45e-21,6;CL:0000075,2.73e-18,7;CL:0000682,4.51e-17,3;CL:0002563,3.22e-14,9;CL:0002251,3.22e-14,9;CL:0000066,1.35e-12,25;CL:0002076,1.72e-08,15;CL:0000473,1.32e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,8.73e-08,3;DOID:4045,8.73e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000344!2.94e-18!15;UBERON:0001242!6.38e-14!13;UBERON:0000060!6.38e-14!13;UBERON:0001262!6.38e-14!13;UBERON:0004786!6.38e-14!13;UBERON:0004923!1.80e-10!24;UBERON:0000331!3.28e-08!3;UBERON:0002116!3.28e-08!3;UBERON:0001204!3.28e-08!3;UBERON:0001168!3.28e-08!3;UBERON:0003350!8.89e-07!9;UBERON:0004808!8.89e-07!9;UBERON:0001277!8.89e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.50e-33,15;UBERON:0001242,2.05e-24,13;UBERON:0001262,2.05e-24,13;UBERON:0004786,2.05e-24,13;UBERON:0004923,1.64e-20,24;UBERON:0000331,4.47e-16,3;UBERON:0002116,4.47e-16,3;UBERON:0001204,4.47e-16,3;UBERON:0001168,4.47e-16,3;UBERON:0003350,3.22e-14,9;UBERON:0004808,3.22e-14,9;UBERON:0001277,3.22e-14,9;UBERON:0001962,2.99e-12,2;UBERON:0001961,2.99e-12,2;UBERON:0001744,2.99e-12,2;UBERON:0002108,3.32e-12,4;UBERON:0000485,1.28e-11,11;UBERON:0000160,9.68e-10,31;UBERON:0002465,1.89e-08,3;UBERON:0003199,5.73e-07,1 | |||
|phase1_expression=0,3.14077866875425,3.18499467572675,0,1.00179145989269,1.17515490338323,3.73780224952841,0,0,0,0,0,0,0,0,0,0,1.10411757875383,0.959801035240171,0.42438965179803,0,0,0,10.8794847499517,15.1410125504332,7.46501553349526,6.46142994238612,5.817723282519,1.71021077510736,1.00812051903972,6.43018480900384,0,0,0,0,0,0,1.67412652294763,0,2.61761871986899,0.588231488031014,1.36609096991689,0.485510353031154,0,0,0,0,0,0,0,0,0,0.503347818173209,0,0,0,0,0,0,0,0,0,0.889294796111139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0.508280908292259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.257347907114715,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0.667134131534611,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0,0.134864346384821,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr3:158560571..158560574,+ | |||
}} |
Revision as of 01:55, 14 September 2013
Short description: | p@chr3:158560571..158560574, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:158560571..158560574, + |
Coexpression cluster: | MCL_coexpression_mm9:397 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.45e-21 | 6 |
gut absorptive cell | 2.45e-21 | 6 |
enterocyte | 2.45e-21 | 6 |
columnar/cuboidal epithelial cell | 2.73e-18 | 7 |
M cell of gut | 4.51e-17 | 3 |
intestinal epithelial cell | 3.22e-14 | 9 |
epithelial cell of alimentary canal | 3.22e-14 | 9 |
epithelial cell | 1.35e-12 | 25 |
endo-epithelial cell | 1.72e-08 | 15 |
defensive cell | 1.32e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.50e-33 | 15 |
intestinal mucosa | 2.05e-24 | 13 |
wall of intestine | 2.05e-24 | 13 |
gastrointestinal system mucosa | 2.05e-24 | 13 |
organ component layer | 1.64e-20 | 24 |
ileal mucosa | 4.47e-16 | 3 |
ileum | 4.47e-16 | 3 |
mucosa of small intestine | 4.47e-16 | 3 |
wall of small intestine | 4.47e-16 | 3 |
epithelium of mucosa | 3.22e-14 | 9 |
gastrointestinal system epithelium | 3.22e-14 | 9 |
intestinal epithelium | 3.22e-14 | 9 |
gut-associated lymphoid tissue | 2.99e-12 | 2 |
mucosa-associated lymphoid tissue | 2.99e-12 | 2 |
lymphoid tissue | 2.99e-12 | 2 |
small intestine | 3.32e-12 | 4 |
simple columnar epithelium | 1.28e-11 | 11 |
intestine | 9.68e-10 | 31 |
lymphoid system | 1.89e-08 | 3 |
egg chamber | 5.73e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 8.73e-08 | 3 |
muscle cancer | 8.73e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.