FFCP PHASE1:Mm9::chr8:72519989..72520007,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=234366|HGNC=|MCL_coexpression_id=1230|UniProt=E9QMN5,Q8CHY6|association_with_transcript=270bp_to_ENSMUST00000065169,NM_001113345,NM_145596,uc009lyg.2,uc009lyh.2,uc009lyi.2_5end|description=CAGE_peak_5_at_Gatad2a_5end|id=chr8:72519989..72520007,-|ontology_enrichment_celltype=CL:0000063!3.52e-09!66;CL:0002031!2.66e-08!25|ontology_enrichment_celltype_v019_2=CL:0002031,2.66e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!1.08e-21!128;UBERON:0001555!1.08e-21!128;UBERON:0007026!1.08e-21!128;UBERON:0004119!1.29e-21!130;UBERON:0000925!1.29e-21!130;UBERON:0006595!1.29e-21!130;UBERON:0004921!1.05e-20!126;UBERON:0004185!1.05e-20!126;UBERON:0005911!4.58e-13!69;UBERON:0003929!2.82e-12!55;UBERON:0002405!3.13e-12!70;UBERON:0005057!2.38e-10!51;UBERON:0005409!1.46e-09!59;UBERON:0000160!2.38e-09!43;UBERON:0002193!3.74e-09!48;UBERON:0001041!1.07e-08!92;UBERON:0000077!1.41e-08!97;UBERON:0004923!1.71e-08!24;UBERON:0000344!3.52e-08!15;UBERON:0002368!4.27e-08!60;UBERON:0002390!5.65e-08!45;UBERON:0003061!5.65e-08!45;UBERON:0004177!1.08e-07!29;UBERON:0000490!1.22e-07!66;UBERON:0001242!2.22e-07!13;UBERON:0000060!2.22e-07!13;UBERON:0001262!2.22e-07!13;UBERON:0004786!2.22e-07!13;UBERON:0000065!4.39e-07!41;UBERON:0002370!8.66e-07!23;UBERON:0000974!8.66e-07!23;UBERON:0004807!8.66e-07!23;UBERON:0005058!8.66e-07!23;UBERON:0003351!8.66e-07!23;UBERON:0009113!8.66e-07!23;UBERON:0003295!8.66e-07!23;UBERON:0009722!8.66e-07!23;UBERON:0005562!8.66e-07!23;UBERON:0007690!8.66e-07!23|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.75e-24,116;UBERON:0001555,8.75e-24,116;UBERON:0007026,8.75e-24,116;UBERON:0004119,1.17e-23,118;UBERON:0000925,1.17e-23,118;UBERON:0006595,1.17e-23,118;UBERON:0004921,9.18e-23,114;UBERON:0000160,4.05e-13,31;UBERON:0005911,4.30e-13,69;UBERON:0003929,2.64e-12,55;UBERON:0005409,3.74e-12,47;UBERON:0001041,3.86e-10,80;UBERON:0002193,3.53e-09,48;UBERON:0002405,3.53e-09,48;UBERON:0004923,1.71e-08,24;UBERON:0000344,3.52e-08,15;UBERON:0002368,4.06e-08,60;UBERON:0002390,5.34e-08,45;UBERON:0003061,5.34e-08,45;UBERON:0004177,1.01e-07,29;UBERON:0005057,1.01e-07,29;UBERON:0000490,1.21e-07,66;UBERON:0000077,1.58e-07,35;UBERON:0001242,2.21e-07,13;UBERON:0001262,2.21e-07,13;UBERON:0004786,2.21e-07,13;UBERON:0000065,4.16e-07,41;UBERON:0002370,8.09e-07,23;UBERON:0000974,8.09e-07,23;UBERON:0004807,8.09e-07,23;UBERON:0005058,8.09e-07,23;UBERON:0003351,8.09e-07,23;UBERON:0009113,8.09e-07,23;UBERON:0003295,8.09e-07,23;UBERON:0009722,8.09e-07,23;UBERON:0005562,8.09e-07,23;UBERON:0007690,8.09e-07,23|phase1_expression=1.44133962394315,28.2670080187882,25.9349566452036,22.6848158480123,26.5474736871564,10.0727563147134,8.1764424208434,6.58528949552039,16.7538579360483,15.4482587372516,6.50628279256919,6.78063351460359,10.2720437958723,11.7143339241457,2.99798785634096,7.69406016081339,2.09868563438444,7.41336088591859,6.99283611389268,9.33657233955666,5.10259740906419,6.15603897445489,5.48519557191764,10.239515058778,7.11168771308227,19.5238867799107,14.2151458732495,11.635446565038,10.6413114895569,13.1055667475164,10.6430645114546,9.52546010189447,10.4561013889377,15.8481681015439,7.51014211353314,4.15586613396231,5.10423390655923,4.60384793810598,6.2506827561904,2.09409497589519,5.88231488031014,5.46436387966757,2.91306211818692,2.01434908760924,1.11514624341466,1.83546752161682,2.34717403304412,1.96222640742402,1.5378032791413,1.74986909166855,1.25987779462826,1.43752564364972,5.70460860596304,10.1550699881588,13.779845764841,2.31533492432352,0.85960031981627,2.06268836910977,1.61853168687678,0.528990979272033,0.633831403506179,3.72728985276045,2.66788438833342,3.1496490104849,7.9109309005358,3.5524005747305,6.89080254192331,5.76327457982332,1.65903379693564,2.02508907497536,1.47227472945967,0.571301968807607,1.54607978666129,1.46988959057945,2.30029130443767,0,3.30347642998166,2.93680877595932,2.15049146558741,1.05509030184155,1.00636407962651,0.52091337055676,2.51264699101243,0.56276261003168,1.83357897332172,0.589257170947335,1.28134512719193,0.931997229126503,2.27178579999552,2.56943304363071,11.0148505706638,6.88339101585109,4.75979933595425,5.39703191637817,9.09686984426737,8.06448396775204,5.05599912474307,2.21559419351475,3.37721805983729,0.70667914902068,2.11265129665021,0,2.54805239706646,21.3320010945999,5.62876706629157,6.08063677140237,4.04419556011827,8.22123933977232,10.616453229534,5.78924342352817,5.20455980298408,4.56698217468212,4.15107895060905,5.12456977878917,4.8211369925639,5.52933001850572,6.17987419335935,3.47038456607788,3.5384422077995,3.88240439873782,6.18356251689102,4.363877278217,16.775258509631,1.75668478206928,2.30391377494801,15.3274233125155,4.43315960671905,0,4.19331749341113,1.9472783122627,2.74500361691176,0.753926112677186,1.73824320192276,1.27857728665165,2.49345653471472,2.43361894601636,2.13862664085664,3.4833951770826,5.05445516867349,3.36706969418358,2.73252930221678,1.14951052216736,2.52086981727489,1.05493372485001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| ||
|EntrezGene=234366 | |||
|HGNC= | |||
|MCL_coexpression_id=1230 | |||
|UniProt=E9QMN5,Q8CHY6 | |||
|association_with_transcript=270bp_to_ENSMUST00000065169,NM_001113345,NM_145596,uc009lyg.2,uc009lyh.2,uc009lyi.2_5end | |||
|description=CAGE_peak_5_at_Gatad2a_5end | |||
|id=chr8:72519989..72520007,- | |||
|ontology_enrichment_celltype=CL:0000063!3.52e-09!66;CL:0002031!2.66e-08!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,2.66e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!1.08e-21!128;UBERON:0001555!1.08e-21!128;UBERON:0007026!1.08e-21!128;UBERON:0004119!1.29e-21!130;UBERON:0000925!1.29e-21!130;UBERON:0006595!1.29e-21!130;UBERON:0004921!1.05e-20!126;UBERON:0004185!1.05e-20!126;UBERON:0005911!4.58e-13!69;UBERON:0003929!2.82e-12!55;UBERON:0002405!3.13e-12!70;UBERON:0005057!2.38e-10!51;UBERON:0005409!1.46e-09!59;UBERON:0000160!2.38e-09!43;UBERON:0002193!3.74e-09!48;UBERON:0001041!1.07e-08!92;UBERON:0000077!1.41e-08!97;UBERON:0004923!1.71e-08!24;UBERON:0000344!3.52e-08!15;UBERON:0002368!4.27e-08!60;UBERON:0002390!5.65e-08!45;UBERON:0003061!5.65e-08!45;UBERON:0004177!1.08e-07!29;UBERON:0000490!1.22e-07!66;UBERON:0001242!2.22e-07!13;UBERON:0000060!2.22e-07!13;UBERON:0001262!2.22e-07!13;UBERON:0004786!2.22e-07!13;UBERON:0000065!4.39e-07!41;UBERON:0002370!8.66e-07!23;UBERON:0000974!8.66e-07!23;UBERON:0004807!8.66e-07!23;UBERON:0005058!8.66e-07!23;UBERON:0003351!8.66e-07!23;UBERON:0009113!8.66e-07!23;UBERON:0003295!8.66e-07!23;UBERON:0009722!8.66e-07!23;UBERON:0005562!8.66e-07!23;UBERON:0007690!8.66e-07!23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,8.75e-24,116;UBERON:0001555,8.75e-24,116;UBERON:0007026,8.75e-24,116;UBERON:0004119,1.17e-23,118;UBERON:0000925,1.17e-23,118;UBERON:0006595,1.17e-23,118;UBERON:0004921,9.18e-23,114;UBERON:0000160,4.05e-13,31;UBERON:0005911,4.30e-13,69;UBERON:0003929,2.64e-12,55;UBERON:0005409,3.74e-12,47;UBERON:0001041,3.86e-10,80;UBERON:0002193,3.53e-09,48;UBERON:0002405,3.53e-09,48;UBERON:0004923,1.71e-08,24;UBERON:0000344,3.52e-08,15;UBERON:0002368,4.06e-08,60;UBERON:0002390,5.34e-08,45;UBERON:0003061,5.34e-08,45;UBERON:0004177,1.01e-07,29;UBERON:0005057,1.01e-07,29;UBERON:0000490,1.21e-07,66;UBERON:0000077,1.58e-07,35;UBERON:0001242,2.21e-07,13;UBERON:0001262,2.21e-07,13;UBERON:0004786,2.21e-07,13;UBERON:0000065,4.16e-07,41;UBERON:0002370,8.09e-07,23;UBERON:0000974,8.09e-07,23;UBERON:0004807,8.09e-07,23;UBERON:0005058,8.09e-07,23;UBERON:0003351,8.09e-07,23;UBERON:0009113,8.09e-07,23;UBERON:0003295,8.09e-07,23;UBERON:0009722,8.09e-07,23;UBERON:0005562,8.09e-07,23;UBERON:0007690,8.09e-07,23 | |||
|phase1_expression=1.44133962394315,28.2670080187882,25.9349566452036,22.6848158480123,26.5474736871564,10.0727563147134,8.1764424208434,6.58528949552039,16.7538579360483,15.4482587372516,6.50628279256919,6.78063351460359,10.2720437958723,11.7143339241457,2.99798785634096,7.69406016081339,2.09868563438444,7.41336088591859,6.99283611389268,9.33657233955666,5.10259740906419,6.15603897445489,5.48519557191764,10.239515058778,7.11168771308227,19.5238867799107,14.2151458732495,11.635446565038,10.6413114895569,13.1055667475164,10.6430645114546,9.52546010189447,10.4561013889377,15.8481681015439,7.51014211353314,4.15586613396231,5.10423390655923,4.60384793810598,6.2506827561904,2.09409497589519,5.88231488031014,5.46436387966757,2.91306211818692,2.01434908760924,1.11514624341466,1.83546752161682,2.34717403304412,1.96222640742402,1.5378032791413,1.74986909166855,1.25987779462826,1.43752564364972,5.70460860596304,10.1550699881588,13.779845764841,2.31533492432352,0.85960031981627,2.06268836910977,1.61853168687678,0.528990979272033,0.633831403506179,3.72728985276045,2.66788438833342,3.1496490104849,7.9109309005358,3.5524005747305,6.89080254192331,5.76327457982332,1.65903379693564,2.02508907497536,1.47227472945967,0.571301968807607,1.54607978666129,1.46988959057945,2.30029130443767,0,3.30347642998166,2.93680877595932,2.15049146558741,1.05509030184155,1.00636407962651,0.52091337055676,2.51264699101243,0.56276261003168,1.83357897332172,0.589257170947335,1.28134512719193,0.931997229126503,2.27178579999552,2.56943304363071,11.0148505706638,6.88339101585109,4.75979933595425,5.39703191637817,9.09686984426737,8.06448396775204,5.05599912474307,2.21559419351475,3.37721805983729,0.70667914902068,2.11265129665021,0,2.54805239706646,21.3320010945999,5.62876706629157,6.08063677140237,4.04419556011827,8.22123933977232,10.616453229534,5.78924342352817,5.20455980298408,4.56698217468212,4.15107895060905,5.12456977878917,4.8211369925639,5.52933001850572,6.17987419335935,3.47038456607788,3.5384422077995,3.88240439873782,6.18356251689102,4.363877278217,16.775258509631,1.75668478206928,2.30391377494801,15.3274233125155,4.43315960671905,0,4.19331749341113,1.9472783122627,2.74500361691176,0.753926112677186,1.73824320192276,1.27857728665165,2.49345653471472,2.43361894601636,2.13862664085664,3.4833951770826,5.05445516867349,3.36706969418358,2.73252930221678,1.14951052216736,2.52086981727489,1.05493372485001,1.7009124787832,1.2811372028485,1.68663104207512,4.13925393182425,3.23351989399263,2.45837904218165,1.58356011747554,0.876782929710299,1.94633074457919,1.74126083261083,3.2925141825271,3.58261680273288,2.1066395619397,2.83082697826187,3.6941254921427,4.14251545071004,3.28336483973535,3.06105504483725,1.89395788468168,3.14822770795846,2.93107514486019,2.79040733700489,2.14618721119695,1.75148013550754,1.97471819896177,3.94001913789829,2.67527071501324,2.04679982395465,1.53685080703735,2.81833479396781,2.10289948564127,1.13195073617213,24.7814087237848,11.1069237998689,2.55945900642281,2.78684006232526,4.51036114627327,7.26060688644033,7.33847544688072,7.79925067061493,12.8122846617018,7.90554982675252,7.79139147280835,6.76452004939913,10.5280607044325,14.3811105384675,13.8328351919804,13.1433240347882,2.46568271239006,3.08470984046268,2.25415471346161,2.64746726198909,1.35766741017338,2.17421041659988,2.65593455921881,3.83786384746966,4.39596437955849,5.30607804863742,10.9687472022245,4.17112764290235,4.32429789249047,4.94696647246678,5.27436315610108,3.13530307678142,4.32863948028414,6.32931502391783,2.2698931748505,1.92192989231657,4.31304619582064,4.09355042435354,6.24075346229121,8.33510297225469,8.61107584905178,8.20153986317724,4.98833613449833,2.08440552947533,1.95557971730431,5.7713329163564,6.10194645550105,4.35516269348721,3.80869825417622,6.24427673144956,4.88668946729192,3.98636441367795,5.74037167166954,6.71839590334526,6.90739927463582,6.65385669474953,4.52373851817817,7.07077388964322,4.42587845717133,2.20749397043786,2.72936002979246,4.21962071731931,0.819674726883377,4.54447668967871,1.57754109708128,3.90438744296638,3.23135096599198,2.15071918157297,4.90157082981267,5.09537755419898,4.85772842009873,4.67609372658099,3.95287777946523,1.28528526568723,2.83880170416537,3.38324646967785,2.28041743095006,3.29940245945071,1.32745138339963,3.64170954232472,3.93020624054176,4.14931175462976,4.42952839321159,1.53717573971964,3.35956781118687,0.727067458955011,4.9909632973861,2.84433082142234,5.27093042874994,5.15677716240934,5.7874732978144,4.50152735078276,3.49268446213437,1.71469628025274,2.83744373827638,2.67553226403106,1.31639216481697,2.74018454203139,3.05073220482823,4.66030555900404,1.7642271844397,3.79238381765404,2.74489525383039,3.07595917133595,3.9392873521035,4.92422699235184,10.2018292820448,3.33765543618917,7.51831875510552,3.714963623338,4.44466865687308,6.02779062415011,7.65487675237741,5.71945433016307,2.71965487990169,2.37917468950219,3.59319931891502,6.68269432610579,2.21435195506795,2.43983360552218,3.0241495430104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| |||
|short_description=p5@Gatad2a | |||
}} | |||
Revision as of 15:55, 14 September 2013
| Short description: | p5@Gatad2a |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_Gatad2a_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1230 |
| Association with transcript: | 270bp_to_ENSMUST00000065169, NM_001113345, NM_145596, uc009lyg.2, uc009lyh.2, uc009lyi.2_5end |
| EntrezGene: | Gatad2a |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic lineage restricted progenitor cell | 2.66e-08 | 25 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
