FFCP PHASE1:Mm9::chr1:34062717..34062753,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13518|HGNC=|MCL_coexpression_id=278|UniProt=|association_with_transcript=0bp_to_uc007aog.1_5end|description=CAGE_peak_3_at_Dst_5end|id=chr1:34062717..34062753,+|ontology_enrichment_celltype=CL:0000393!7.34e-09!39;CL:0000211!7.34e-09!39;CL:0000540!5.93e-08!33;CL:0000047!5.93e-08!33;CL:0000031!5.93e-08!33;CL:0000404!5.93e-08!33|ontology_enrichment_celltype_v019_2=CL:0000393,6.74e-09,39;CL:0000211,6.74e-09,39;CL:0000540,5.51e-08,33;CL:0000047,5.51e-08,33;CL:0000031,5.51e-08,33;CL:0000404,5.51e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.92e-18!73;UBERON:0005743!2.92e-18!73;UBERON:0000073!5.79e-18!75;UBERON:0001016!5.79e-18!75;UBERON:0004121!4.50e-17!102;UBERON:0000924!4.50e-17!102;UBERON:0006601!4.50e-17!102;UBERON:0002346!5.05e-16!71;UBERON:0003075!5.05e-16!71;UBERON:0007284!5.05e-16!71;UBERON:0000033!3.90e-15!63;UBERON:0000955!6.82e-14!50;UBERON:0006238!6.82e-14!50;UBERON:0002616!1.71e-13!49;UBERON:0001049!6.18e-13!52;UBERON:0005068!6.18e-13!52;UBERON:0006241!6.18e-13!52;UBERON:0007135!6.18e-13!52;UBERON:0003056!4.88e-12!49;UBERON:0003080!1.54e-10!40;UBERON:0002780!5.85e-10!39;UBERON:0001890!5.85e-10!39;UBERON:0006240!5.85e-10!39;UBERON:0000025!1.01e-09!114;UBERON:0004111!2.54e-09!122;UBERON:0002020!1.37e-08!34;UBERON:0002791!4.54e-08!29;UBERON:0003528!4.54e-08!29;UBERON:0001893!4.54e-08!29;UBERON:0002021!1.28e-07!10;UBERON:0000411!1.28e-07!10;UBERON:0001950!1.28e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.15e-18,92;UBERON:0001017,1.74e-18,73;UBERON:0001016,3.48e-18,75;UBERON:0004121,5.40e-17,95;UBERON:0000924,5.40e-17,95;UBERON:0006601,5.40e-17,95;UBERON:0002346,3.67e-16,64;UBERON:0003075,3.67e-16,64;UBERON:0007284,3.67e-16,64;UBERON:0010371,1.12e-14,73;UBERON:0000073,3.15e-14,54;UBERON:0001049,4.64e-13,52;UBERON:0005068,4.64e-13,52;UBERON:0006241,4.64e-13,52;UBERON:0007135,4.64e-13,52;UBERON:0000955,2.91e-12,47;UBERON:0006238,2.91e-12,47;UBERON:0003056,4.32e-12,49;UBERON:0002616,7.14e-12,46;UBERON:0003080,1.39e-10,40;UBERON:0002780,5.31e-10,39;UBERON:0001890,5.31e-10,39;UBERON:0006240,5.31e-10,39;UBERON:0000025,1.21e-09,114;UBERON:0004111,3.24e-09,122;UBERON:0002020,1.27e-08,34;UBERON:0003528,4.21e-08,29;UBERON:0002791,4.21e-08,29;UBERON:0001893,4.21e-08,29;UBERON:0002021,1.20e-07,10;UBERON:0000411,1.20e-07,10;UBERON:0001950,1.20e-07,10|phase1_expression=21.2997966649376,0.348975407639361,0,0,0,0.503637815735669,0,4.26106967357202,0.140788722151667,0,0,0,0.171200729931206,0,1.33243904726265,1.21485160433896,2.09868563438444,0.157731082679119,0.411343300817216,0.42438965179803,10.2051948181284,0,0,0.319984845586813,0,0,0,0,0.190023419456374,0.252030129759931,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,13.2191658874356,14.3955242331711,5.87349606917381,0,4.36050312760893,2.85592037554813,12.6379434398284,2.37976916763116,0,0.335565212115473,3.62681071005672,0,5.40244815675489,5.73066879877513,9.7977697532714,5.26022798234954,4.7609188134483,7.60597684207415,1.0165335962074,0.889294796111139,0.449949858640699,0,0.7104801149461,2.39680088414724,6.53171119046643,6.53244557543409,4.45519596494579,4.83747411108179,4.57041575046086,5.30084498283872,3.55223317723367,5.17565543498476,1.83843757322004,41.8440347797677,27.197403012145,31.9501589172986,5.27545150920775,8.32537556781928,8.85552729946492,13.1216009530649,18.0084035210138,31.7820355375765,12.6690291753677,12.9558229527184,7.26957838718672,2.49896437999507,7.70829913089212,15.6526823898906,0,4.0798280022465,0.539703191637817,0.649776417447669,0,2.24711072210803,1.1930122580464,0.259786004602869,0.35333957451034,8.16891834704747,5.13305909657271,2.54805239706646,0,4.97929394325792,5.57391704045217,6.57181778519218,2.39786147410026,9.58070169494535,8.01587550950054,5.37804512975021,7.91610243611567,3.92046345335299,7.08396410597326,11.2885158850277,2.13633205260448,2.47194967734374,9.39895819979426,2.65383165584962,5.66183974815932,3.5334642953663,2.90925151881133,3.72783522436244,38.0615036115011,40.2137677081834,1.27728527604296,4.55297473122497,2.99951365496704,1.65191295194984,35.2008002601333,26.0775343606617,4.52355667606312,29.3763101124947,26.5944075623544,31.7915708176127,23.2005006186893,2.34230536855727,2.23932547098167,2.52722758433675,3.78795340595653,5.72529949035896,4.36813998423599,8.82304436046211,11.4535661555143,11.6342413548771,13.0675994690547,10.026084527891,13.1938719076898,5.6047678162539,15.3175924935934,11.4368230706567,3.94552318369635,7.78532297831674,8.00979983000983,9.4659782747654,1.19420560091096,1.40442637462647,0.772043721344145,0,3.10688658803253,3.98694301967864,3.96136535214233,3.78791576936336,7.28027657465394,6.01641740260775,7.20855228726264,6.70683503499048,5.02090972178829,5.9241545968853,15.431741623435,13.3763535750662,11.2573990317506,14.2707574939183,13.2864354572768,27.3376933133365,7.40913209130848,0.660837565967596,0.793351699990633,3.62590025909898,4.87697010906921,4.12375876230699,5.44545516483025,3.558048701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| ||
|EntrezGene=13518 | |||
|HGNC= | |||
|MCL_coexpression_id=278 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc007aog.1_5end | |||
|description=CAGE_peak_3_at_Dst_5end | |||
|id=chr1:34062717..34062753,+ | |||
|ontology_enrichment_celltype=CL:0000393!7.34e-09!39;CL:0000211!7.34e-09!39;CL:0000540!5.93e-08!33;CL:0000047!5.93e-08!33;CL:0000031!5.93e-08!33;CL:0000404!5.93e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,6.74e-09,39;CL:0000211,6.74e-09,39;CL:0000540,5.51e-08,33;CL:0000047,5.51e-08,33;CL:0000031,5.51e-08,33;CL:0000404,5.51e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.92e-18!73;UBERON:0005743!2.92e-18!73;UBERON:0000073!5.79e-18!75;UBERON:0001016!5.79e-18!75;UBERON:0004121!4.50e-17!102;UBERON:0000924!4.50e-17!102;UBERON:0006601!4.50e-17!102;UBERON:0002346!5.05e-16!71;UBERON:0003075!5.05e-16!71;UBERON:0007284!5.05e-16!71;UBERON:0000033!3.90e-15!63;UBERON:0000955!6.82e-14!50;UBERON:0006238!6.82e-14!50;UBERON:0002616!1.71e-13!49;UBERON:0001049!6.18e-13!52;UBERON:0005068!6.18e-13!52;UBERON:0006241!6.18e-13!52;UBERON:0007135!6.18e-13!52;UBERON:0003056!4.88e-12!49;UBERON:0003080!1.54e-10!40;UBERON:0002780!5.85e-10!39;UBERON:0001890!5.85e-10!39;UBERON:0006240!5.85e-10!39;UBERON:0000025!1.01e-09!114;UBERON:0004111!2.54e-09!122;UBERON:0002020!1.37e-08!34;UBERON:0002791!4.54e-08!29;UBERON:0003528!4.54e-08!29;UBERON:0001893!4.54e-08!29;UBERON:0002021!1.28e-07!10;UBERON:0000411!1.28e-07!10;UBERON:0001950!1.28e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.15e-18,92;UBERON:0001017,1.74e-18,73;UBERON:0001016,3.48e-18,75;UBERON:0004121,5.40e-17,95;UBERON:0000924,5.40e-17,95;UBERON:0006601,5.40e-17,95;UBERON:0002346,3.67e-16,64;UBERON:0003075,3.67e-16,64;UBERON:0007284,3.67e-16,64;UBERON:0010371,1.12e-14,73;UBERON:0000073,3.15e-14,54;UBERON:0001049,4.64e-13,52;UBERON:0005068,4.64e-13,52;UBERON:0006241,4.64e-13,52;UBERON:0007135,4.64e-13,52;UBERON:0000955,2.91e-12,47;UBERON:0006238,2.91e-12,47;UBERON:0003056,4.32e-12,49;UBERON:0002616,7.14e-12,46;UBERON:0003080,1.39e-10,40;UBERON:0002780,5.31e-10,39;UBERON:0001890,5.31e-10,39;UBERON:0006240,5.31e-10,39;UBERON:0000025,1.21e-09,114;UBERON:0004111,3.24e-09,122;UBERON:0002020,1.27e-08,34;UBERON:0003528,4.21e-08,29;UBERON:0002791,4.21e-08,29;UBERON:0001893,4.21e-08,29;UBERON:0002021,1.20e-07,10;UBERON:0000411,1.20e-07,10;UBERON:0001950,1.20e-07,10 | |||
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| |||
|short_description=p3@Dst | |||
}} |
Revision as of 20:14, 13 September 2013
Short description: | p3@Dst |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dst_5end |
Coexpression cluster: | MCL_coexpression_mm9:278 |
Association with transcript: | 0bp_to_uc007aog.1_5end |
EntrezGene: | Dst |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 6.74e-09 | 39 |
electrically active cell | 6.74e-09 | 39 |
neuron | 5.51e-08 | 33 |
neuronal stem cell | 5.51e-08 | 33 |
neuroblast | 5.51e-08 | 33 |
electrically signaling cell | 5.51e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.15e-18 | 92 |
central nervous system | 1.74e-18 | 73 |
nervous system | 3.48e-18 | 75 |
ectoderm-derived structure | 5.40e-17 | 95 |
ectoderm | 5.40e-17 | 95 |
presumptive ectoderm | 5.40e-17 | 95 |
neurectoderm | 3.67e-16 | 64 |
neural plate | 3.67e-16 | 64 |
presumptive neural plate | 3.67e-16 | 64 |
ecto-epithelium | 1.12e-14 | 73 |
regional part of nervous system | 3.15e-14 | 54 |
neural tube | 4.64e-13 | 52 |
neural rod | 4.64e-13 | 52 |
future spinal cord | 4.64e-13 | 52 |
neural keel | 4.64e-13 | 52 |
brain | 2.91e-12 | 47 |
future brain | 2.91e-12 | 47 |
pre-chordal neural plate | 4.32e-12 | 49 |
regional part of brain | 7.14e-12 | 46 |
anterior neural tube | 1.39e-10 | 40 |
regional part of forebrain | 5.31e-10 | 39 |
forebrain | 5.31e-10 | 39 |
future forebrain | 5.31e-10 | 39 |
tube | 1.21e-09 | 114 |
anatomical conduit | 3.24e-09 | 122 |
gray matter | 1.27e-08 | 34 |
brain grey matter | 4.21e-08 | 29 |
regional part of telencephalon | 4.21e-08 | 29 |
telencephalon | 4.21e-08 | 29 |
occipital lobe | 1.20e-07 | 10 |
visual cortex | 1.20e-07 | 10 |
neocortex | 1.20e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.