FFCP PHASE1:Hg19::chr2:237683038..237683048,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=N | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
Revision as of 04:41, 9 July 2013
| Short description: | p@chr2:237683038..237683048, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr2:237683038..237683048, + |
| Coexpression cluster: | C323_Placental_Amniotic_neuroblastoma_amniotic_chorionic_hairy_locus |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p@chr2:237683038..237683048+ |
|---|
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| extraembryonic cell | 6.31e-66 | 19 |
| amniotic epithelial cell | 1.34e-40 | 2 |
| placental epithelial cell | 1.06e-27 | 3 |
| chorionic membrane mesenchymal stem cell | 5.31e-27 | 3 |
| amnion mesenchymal stem cell | 8.82e-17 | 5 |
| Ontology term | p-value | n |
|---|---|---|
| extraembryonic membrane | 1.90e-89 | 14 |
| membranous layer | 1.90e-89 | 14 |
| extraembryonic structure | 3.41e-52 | 24 |
| amnion | 1.99e-45 | 7 |
| chorion | 1.99e-45 | 7 |
| somatic layer of lateral plate mesoderm | 7.86e-40 | 8 |
| egg chorion | 5.31e-27 | 3 |
| placenta | 4.68e-21 | 4 |
| allantois | 4.68e-21 | 4 |
| organ component layer | 7.00e-19 | 66 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
