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MCL coexpression mm9:195: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0000160!2.05e-32!31;UBERON:0005409!1.00e-31!47;UBERON:0000344!1.43e-18!15;UBERON:0001242!2.49e-16!13;UBERON:0000060!2.49e-16!13;UBERON:0001262!2.49e-16!13;UBERON:0004786!2.49e-16!13;UBERON:0003350!1.89e-11!9;UBERON:0004808!1.89e-11!9;UBERON:0001277!1.89e-11!9;UBERON:0004923!9.09e-10!24;UBERON:0000485!6.48e-09!11;UBERON:0001007!1.93e-08!116;UBERON:0001555!1.93e-08!116;UBERON:0007026!1.93e-08!116;UBERON:0004119!4.19e-08!118;UBERON:0000925!4.19e-08!118;UBERON:0006595!4.19e-08!118;UBERON:0004921!2.32e-07!114
|ontology_enrichment_uberon=UBERON:0000160!2.05e-32!31;UBERON:0005409!1.00e-31!47;UBERON:0000344!1.43e-18!15;UBERON:0001242!2.49e-16!13;UBERON:0000060!2.49e-16!13;UBERON:0001262!2.49e-16!13;UBERON:0004786!2.49e-16!13;UBERON:0003350!1.89e-11!9;UBERON:0004808!1.89e-11!9;UBERON:0001277!1.89e-11!9;UBERON:0004923!9.09e-10!24;UBERON:0000485!6.48e-09!11;UBERON:0001007!1.93e-08!116;UBERON:0001555!1.93e-08!116;UBERON:0007026!1.93e-08!116;UBERON:0004119!4.19e-08!118;UBERON:0000925!4.19e-08!118;UBERON:0006595!4.19e-08!118;UBERON:0004921!2.32e-07!114
|tfbs_overrepresentation_for_novel_motifs=0.390974,0.269585,0.167843,0.262421,0.628851,0.839065,0.200668,0.577921,0.445611,0.160359,0.15853,0.188665,0.0852669,0.466435,0.976789,0,0.147107,0.124616,0.344398,0.313469,0.450354,0.866819,0.0584084,0.414355,0.584695,0.068861,0.457246,0.135923,0.205251,0.172445,0.295881,0.207796,0.121672,0.365229,0.477353,0.275343,0.109894,0.185126,1.17844,0.349664,0.0172094,0.128528,0.914349,0.0233952,0.563818,0.245644,0.701166,0.149495,0.229287,0.374235,0.426449,0.0795925,0.241561,0.82463,0.853723,0.220735,0.398394,0.397138,0.0209211,0.0605411,0.195103,0.284023,0.498695,0.411129,0.232624,0.15371,1.08842,1.73087,0.56118,0.596945,0.145299,0.430118,0.0182505,0.343975,0.159625,0.474631,1.13969,0.330074,0.542583,0.12998,0.832876,0.924209,0.591893,0.0119543,0.259536,0.00711971,4.7813,0.0545306,0.350591,0.8801,0.482802,0.727479,0.21607,0.914896,0.0320881,0.766266,0.0818923,0.217901,0.105974,0.721882,0.212751,1.12824,0.795808,0.427263,0.42582,0.0314134,0.51011,0.611989,0.135324,0.0456197,0.192273,0.294242,0.465866,0.0422787,0.488732,0.848887,0.210285,0.110637,0.452392,0.346089,0.348112,0.383163,0.244711,0.100066,0.534855,0.186747,0.0572888,0.211675,0.423921,0.275259,1.40358,0.251388,1.03386,0.50709,0.507019,0.406592,0.672521,0.5613,0.465634,1.23388,0.850171,0.42899,0.548505,0.614519,0.133819,0.0316331,0.348323,1.19527,0.415621,0.891346,0.732613,0.112901,0.306853,0.396661,0.0659546,0.368932,0.577351,0.760042,0.198398,0.0840455,1.19288,0.718107,0.548728,0.189294,0.132063,0.226377,0.210272,0.734381,0.357817
|tfbs_overrepresentation_for_novel_motifs=0.390974,0.269585,0.167843,0.262421,0.628851,0.839065,0.200668,0.577921,0.445611,0.160359,0.15853,0.188665,0.0852669,0.466435,0.976789,0,0.147107,0.124616,0.344398,0.313469,0.450354,0.866819,0.0584084,0.414355,0.584695,0.068861,0.457246,0.135923,0.205251,0.172445,0.295881,0.207796,0.121672,0.365229,0.477353,0.275343,0.109894,0.185126,1.17844,0.349664,0.0172094,0.128528,0.914349,0.0233952,0.563818,0.245644,0.701166,0.149495,0.229287,0.374235,0.426449,0.0795925,0.241561,0.82463,0.853723,0.220735,0.398394,0.397138,0.0209211,0.0605411,0.195103,0.284023,0.498695,0.411129,0.232624,0.15371,1.08842,1.73087,0.56118,0.596945,0.145299,0.430118,0.0182505,0.343975,0.159625,0.474631,1.13969,0.330074,0.542583,0.12998,0.832876,0.924209,0.591893,0.0119543,0.259536,0.00711971,4.7813,0.0545306,0.350591,0.8801,0.482802,0.727479,0.21607,0.914896,0.0320881,0.766266,0.0818923,0.217901,0.105974,0.721882,0.212751,1.12824,0.795808,0.427263,0.42582,0.0314134,0.51011,0.611989,0.135324,0.0456197,0.192273,0.294242,0.465866,0.0422787,0.488732,0.848887,0.210285,0.110637,0.452392,0.346089,0.348112,0.383163,0.244711,0.100066,0.534855,0.186747,0.0572888,0.211675,0.423921,0.275259,1.40358,0.251388,1.03386,0.50709,0.507019,0.406592,0.672521,0.5613,0.465634,1.23388,0.850171,0.42899,0.548505,0.614519,0.133819,0.0316331,0.348323,1.19527,0.415621,0.891346,0.732613,0.112901,0.306853,0.396661,0.0659546,0.368932,0.577351,0.760042,0.198398,0.0840455,1.19288,0.718107,0.548728,0.189294,0.132063,0.226377,0.210272,0.734381,0.357817
|tfbs_overrepresentation_jaspar=MA0003.1;0.361186,MA0004.1;0.26316,MA0006.1;0.283215,MA0007.1;0.455364,MA0009.1;0.639204,MA0014.1;0.0199126,MA0017.1;1.10753,MA0019.1;0.118171,MA0024.1;0.196794,MA0025.1;0.396486,MA0027.1;1.72512,MA0028.1;0.496571,MA0029.1;0.183342,MA0030.1;0.549559,MA0031.1;0.961834,MA0038.1;0.520346,MA0040.1;1.22728,MA0041.1;0.15935,MA0042.1;0.292382,MA0043.1;0.292217,MA0046.1;2.78435,MA0048.1;0.195102,MA0050.1;0.0347411,MA0051.1;0.072306,MA0052.1;0.238782,MA0055.1;1.32965,MA0056.1;0,MA0057.1;0.0259002,MA0058.1;0.479191,MA0059.1;0.303471,MA0060.1;0.35672,MA0061.1;0.469173,MA0063.1;0,MA0066.1;0.230674,MA0067.1;0.487659,MA0068.1;0.0122507,MA0069.1;0.239012,MA0070.1;0.232486,MA0071.1;0.323848,MA0072.1;0.226836,MA0073.1;0.2111,MA0074.1;0.193543,MA0076.1;0.10717,MA0077.1;0.212635,MA0078.1;0.290551,MA0081.1;0.178525,MA0083.1;0.291642,MA0084.1;0.77897,MA0087.1;0.722734,MA0088.1;0.0607147,MA0089.1;0,MA0090.1;0.410136,MA0091.1;0.118208,MA0092.1;0.213667,MA0093.1;0.329017,MA0095.1;0,MA0098.1;0,MA0100.1;0.40833,MA0101.1;0.160911,MA0103.1;0.860482,MA0105.1;0.228655,MA0106.1;0.299814,MA0107.1;0.201964,MA0108.2;1.314,MA0109.1;0,MA0111.1;0.0937272,MA0113.1;0.56402,MA0114.1;2.62987,MA0115.1;0.798765,MA0116.1;0.459838,MA0117.1;0.271094,MA0119.1;1.15719,MA0122.1;0.778359,MA0124.1;0.443363,MA0125.1;0.997808,MA0130.1;0,MA0131.1;0.115897,MA0132.1;0,MA0133.1;0,MA0135.1;0.319042,MA0136.1;0.810321,MA0139.1;0.151426,MA0140.1;0.182093,MA0141.1;0.247721,MA0142.1;0.157594,MA0143.1;0.0841708,MA0144.1;0.177232,MA0145.1;1.01992,MA0146.1;0.0409357,MA0147.1;0.340503,MA0148.1;1.22536,MA0149.1;0.0132734,MA0062.2;0.520583,MA0035.2;0.416757,MA0039.2;0.367259,MA0138.2;0.11197,MA0002.2;1.01464,MA0137.2;0.658524,MA0104.2;0.188655,MA0047.2;2.43309,MA0112.2;0.02166,MA0065.2;1.23571,MA0150.1;0.737145,MA0151.1;0,MA0152.1;0.0685781,MA0153.1;2.4054,MA0154.1;0.1876,MA0155.1;0.0335013,MA0156.1;0.622556,MA0157.1;0.851523,MA0158.1;0,MA0159.1;0.564094,MA0160.1;0.293234,MA0161.1;0,MA0162.1;0.352356,MA0163.1;0.162202,MA0164.1;0.0590314,MA0080.2;1.14082,MA0018.2;0.224336,MA0099.2;0.715168,MA0079.2;2.99281e-06,MA0102.2;0.827688,MA0258.1;0.147236,MA0259.1;0.0368909,MA0442.1;0
}}
}}

Revision as of 11:20, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:83977978..83977995,-p@chr11:83977978..83977995
-
Mm9::chr11:95776168..95776195,-p1@B4galnt2
Mm9::chr11:95776198..95776215,-p2@B4galnt2
Mm9::chr13:4278603..4278619,-p2@Akr1c12
Mm9::chr13:99464724..99464751,-p2@Tmem171
Mm9::chr13:99464780..99464802,-p1@Tmem171
Mm9::chr14:27928344..27928387,+p@chr14:27928344..27928387
+
Mm9::chr14:34930938..34930975,-p@chr14:34930938..34930975
-
Mm9::chr16:17176048..17176058,-p@chr16:17176048..17176058
-
Mm9::chr16:48410233..48410263,-p@chr16:48410233..48410263
-
Mm9::chr17:23877826..23877855,-p@chr17:23877826..23877855
-
Mm9::chr17:23990486..23990508,+p2@Prss32
Mm9::chr17:26002515..26002517,+p@chr17:26002515..26002517
+
Mm9::chr17:37026979..37026995,-p2@Trim40
Mm9::chr17:57120743..57120752,+p@chr17:57120743..57120752
+
Mm9::chr17:86838357..86838370,+p@chr17:86838357..86838370
+
Mm9::chr18:61371105..61371108,-p5@Slc26a2
Mm9::chr18:61371132..61371148,-p1@Slc26a2
Mm9::chr19:45089485..45089496,+p13@Lzts2
Mm9::chr1:168060648..168060659,+p4@Gpa33
Mm9::chr1:187255840..187255858,+p@chr1:187255840..187255858
+
Mm9::chr1:34908677..34908707,+p3@Plekhb2
Mm9::chr1:89991629..89991663,+p1@Ugt1a7c
Mm9::chr1:90083177..90083194,+p1@ENSMUST00000120438
Mm9::chr1:90083201..90083212,+p2@ENSMUST00000120438
Mm9::chr2:151398364..151398409,+p1@Sdcbp2
Mm9::chr2:20658908..20658928,+p6@Etl4
Mm9::chr2:20658933..20658948,+p5@Etl4
Mm9::chr3:30978549..30978583,-p@chr3:30978549..30978583
-
Mm9::chr3:51464989..51464992,+p7@Mgst2
Mm9::chr3:95328801..95328817,-p@chr3:95328801..95328817
-
Mm9::chr5:4023304..4023318,+p@chr5:4023304..4023318
+
Mm9::chr5:65819637..65819644,-p11@Ugdh
Mm9::chr5:65826956..65826973,-p1@Ugdh
Mm9::chr5:73583075..73583086,-p@chr5:73583075..73583086
-
Mm9::chr5:74021590..74021604,-p3@Lrrc66
Mm9::chr5:8046122..8046152,+p3@Sri
Mm9::chr5:8046162..8046184,+p4@Sri
Mm9::chr6:114347749..114347771,-p@chr6:114347749..114347771
-
Mm9::chr6:115312329..115312340,+p@chr6:115312329..115312340
+
Mm9::chr6:131303575..131303628,-p1@Styk1
Mm9::chr6:29803746..29803790,+p2@Ahcyl2
Mm9::chr6:42211956..42212006,+p1@Tmem139
Mm9::chr6:72566719..72566750,-p1@Tgoln2
Mm9::chr7:114809099..114809120,+p@chr7:114809099..114809120
+
Mm9::chr7:26248738..26248748,-p@chr7:26248738..26248748
-
Mm9::chr7:30032945..30032958,-p@chr7:30032945..30032958
-
Mm9::chr8:15032409..15032435,+p@chr8:15032409..15032435
+
Mm9::chr8:79423144..79423178,+p3@Nr3c2
Mm9::chr8:79426176..79426275,+p1@Nr3c2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.361186
MA0004.10.26316
MA0006.10.283215
MA0007.10.455364
MA0009.10.639204
MA0014.10.0199126
MA0017.11.10753
MA0019.10.118171
MA0024.10.196794
MA0025.10.396486
MA0027.11.72512
MA0028.10.496571
MA0029.10.183342
MA0030.10.549559
MA0031.10.961834
MA0038.10.520346
MA0040.11.22728
MA0041.10.15935
MA0042.10.292382
MA0043.10.292217
MA0046.12.78435
MA0048.10.195102
MA0050.10.0347411
MA0051.10.072306
MA0052.10.238782
MA0055.11.32965
MA0056.10
MA0057.10.0259002
MA0058.10.479191
MA0059.10.303471
MA0060.10.35672
MA0061.10.469173
MA0063.10
MA0066.10.230674
MA0067.10.487659
MA0068.10.0122507
MA0069.10.239012
MA0070.10.232486
MA0071.10.323848
MA0072.10.226836
MA0073.10.2111
MA0074.10.193543
MA0076.10.10717
MA0077.10.212635
MA0078.10.290551
MA0081.10.178525
MA0083.10.291642
MA0084.10.77897
MA0087.10.722734
MA0088.10.0607147
MA0089.10
MA0090.10.410136
MA0091.10.118208
MA0092.10.213667
MA0093.10.329017
MA0095.10
MA0098.10
MA0100.10.40833
MA0101.10.160911
MA0103.10.860482
MA0105.10.228655
MA0106.10.299814
MA0107.10.201964
MA0108.21.314
MA0109.10
MA0111.10.0937272
MA0113.10.56402
MA0114.12.62987
MA0115.10.798765
MA0116.10.459838
MA0117.10.271094
MA0119.11.15719
MA0122.10.778359
MA0124.10.443363
MA0125.10.997808
MA0130.10
MA0131.10.115897
MA0132.10
MA0133.10
MA0135.10.319042
MA0136.10.810321
MA0139.10.151426
MA0140.10.182093
MA0141.10.247721
MA0142.10.157594
MA0143.10.0841708
MA0144.10.177232
MA0145.11.01992
MA0146.10.0409357
MA0147.10.340503
MA0148.11.22536
MA0149.10.0132734
MA0062.20.520583
MA0035.20.416757
MA0039.20.367259
MA0138.20.11197
MA0002.21.01464
MA0137.20.658524
MA0104.20.188655
MA0047.22.43309
MA0112.20.02166
MA0065.21.23571
MA0150.10.737145
MA0151.10
MA0152.10.0685781
MA0153.12.4054
MA0154.10.1876
MA0155.10.0335013
MA0156.10.622556
MA0157.10.851523
MA0158.10
MA0159.10.564094
MA0160.10.293234
MA0161.10
MA0162.10.352356
MA0163.10.162202
MA0164.10.0590314
MA0080.21.14082
MA0018.20.224336
MA0099.20.715168
MA0079.22.99281e-06
MA0102.20.827688
MA0258.10.147236
MA0259.10.0368909
MA0442.10
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