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MCL coexpression mm9:197: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0000474!4.33e-35!9;UBERON:0003100!8.23e-29!11;UBERON:0003134!1.47e-25!8;UBERON:0003975!2.45e-23!5;UBERON:0000996!4.85e-14!1;UBERON:0000993!6.50e-14!1;UBERON:0006834!1.55e-13!1;UBERON:0005795!1.56e-13!4;UBERON:0000995!1.56e-13!4;UBERON:0004175!2.54e-13!9;UBERON:0005156!1.96e-12!26;UBERON:0000990!1.96e-12!26;UBERON:0003133!7.18e-09!24
|ontology_enrichment_uberon=UBERON:0000474!4.33e-35!9;UBERON:0003100!8.23e-29!11;UBERON:0003134!1.47e-25!8;UBERON:0003975!2.45e-23!5;UBERON:0000996!4.85e-14!1;UBERON:0000993!6.50e-14!1;UBERON:0006834!1.55e-13!1;UBERON:0005795!1.56e-13!4;UBERON:0000995!1.56e-13!4;UBERON:0004175!2.54e-13!9;UBERON:0005156!1.96e-12!26;UBERON:0000990!1.96e-12!26;UBERON:0003133!7.18e-09!24
|tfbs_overrepresentation_for_novel_motifs=0.087883,1.15112,0.0153296,1.21416,0.684761,0.563758,0.21614,0.639897,0.332996,0.028611,0.0451347,0.448594,0.0168606,0.229212,0.324969,0,0.156156,0.906419,0.556658,0.363106,0.285729,0.485826,0.0638467,0.677665,0.195267,0.259752,0.354235,0.61953,0.00703565,0.60421,0.581851,0.218433,0.138288,0.413756,0.326206,0.0275663,0.00264961,0.0542554,0.0402951,0.0261822,1.23292,0.0352062,0.678975,0.527498,0.439793,0.0260771,0.364491,0.0421019,0.373215,0.918826,0.146292,0.0861139,1.43254,0.318153,0.331284,0.0668711,0.674248,0.0512003,0.64359,0.234757,0.205446,0.090253,1.0159,0.140078,0.0711758,0.162957,0.439104,0.745343,0.20246,0.612261,0.0125533,0.479824,0.000291255,0.356978,0.106602,0.0886649,0.100031,0.349818,1.07697,0.144952,0.110026,0.16624,0.300687,1.06058,0.271222,1.51659e-05,5.91991,0.0664884,0.115933,0.89663,0.497291,0.274761,0.643596,0.481792,0.0109783,0.417878,0.177984,0.228762,0.364823,0.331639,0.125595,0.623258,0.823519,0.449363,0.447889,0.0350898,0.180874,0.158994,0.0557079,0.051983,0.211051,1.49714,0.296522,0.0467321,0.503271,0.441228,0.00106127,0.852081,0.92422,0.580783,0.36117,0.128839,0.26183,0.348659,0.549755,0.196886,0.841093,0.222399,0.437859,1.68449,0.292755,0.113052,0.413771,0.252135,0.521707,0.0372143,0.0213969,0.0355804,0.479972,1.25109,0.866611,0.442979,0.979275,0.639953,0.142451,0.328996,0.743107,1.21243,0.448626,0.467269,0.0130865,1.26959e-06,0.855277,0.16244,0.913197,0.382254,0.609634,1.12384,1.00894,0.0934591,0.487979,0.270616,0.573131,0.207908,0.434286,0.520751,0.236133,0.445567,1.37604e-05
|tfbs_overrepresentation_for_novel_motifs=0.087883,1.15112,0.0153296,1.21416,0.684761,0.563758,0.21614,0.639897,0.332996,0.028611,0.0451347,0.448594,0.0168606,0.229212,0.324969,0,0.156156,0.906419,0.556658,0.363106,0.285729,0.485826,0.0638467,0.677665,0.195267,0.259752,0.354235,0.61953,0.00703565,0.60421,0.581851,0.218433,0.138288,0.413756,0.326206,0.0275663,0.00264961,0.0542554,0.0402951,0.0261822,1.23292,0.0352062,0.678975,0.527498,0.439793,0.0260771,0.364491,0.0421019,0.373215,0.918826,0.146292,0.0861139,1.43254,0.318153,0.331284,0.0668711,0.674248,0.0512003,0.64359,0.234757,0.205446,0.090253,1.0159,0.140078,0.0711758,0.162957,0.439104,0.745343,0.20246,0.612261,0.0125533,0.479824,0.000291255,0.356978,0.106602,0.0886649,0.100031,0.349818,1.07697,0.144952,0.110026,0.16624,0.300687,1.06058,0.271222,1.51659e-05,5.91991,0.0664884,0.115933,0.89663,0.497291,0.274761,0.643596,0.481792,0.0109783,0.417878,0.177984,0.228762,0.364823,0.331639,0.125595,0.623258,0.823519,0.449363,0.447889,0.0350898,0.180874,0.158994,0.0557079,0.051983,0.211051,1.49714,0.296522,0.0467321,0.503271,0.441228,0.00106127,0.852081,0.92422,0.580783,0.36117,0.128839,0.26183,0.348659,0.549755,0.196886,0.841093,0.222399,0.437859,1.68449,0.292755,0.113052,0.413771,0.252135,0.521707,0.0372143,0.0213969,0.0355804,0.479972,1.25109,0.866611,0.442979,0.979275,0.639953,0.142451,0.328996,0.743107,1.21243,0.448626,0.467269,0.0130865,1.26959e-06,0.855277,0.16244,0.913197,0.382254,0.609634,1.12384,1.00894,0.0934591,0.487979,0.270616,0.573131,0.207908,0.434286,0.520751,0.236133,0.445567,1.37604e-05
|tfbs_overrepresentation_jaspar=MA0003.1;0.000133484,MA0004.1;0.285415,MA0006.1;0.0774616,MA0007.1;0.107576,MA0009.1;0.236033,MA0014.1;4.43033e-05,MA0017.1;0.216196,MA0019.1;0.126267,MA0024.1;0.207177,MA0025.1;0.410131,MA0027.1;1.74268,MA0028.1;0.0287792,MA0029.1;0.193395,MA0030.1;1.08865,MA0031.1;0.175589,MA0038.1;0.259662,MA0040.1;0.244539,MA0041.1;0.0142642,MA0042.1;0.159795,MA0043.1;0.304463,MA0046.1;0.260741,MA0048.1;0.0436434,MA0050.1;0.151807,MA0051.1;0.0784768,MA0052.1;0.250075,MA0055.1;0.0143943,MA0056.1;0,MA0057.1;0.0329326,MA0058.1;0.151619,MA0059.1;0.0627762,MA0060.1;0.251707,MA0061.1;0.101922,MA0063.1;0,MA0066.1;0.0704666,MA0067.1;0.502189,MA0068.1;0.57366,MA0069.1;0.250309,MA0070.1;1.26622,MA0071.1;0.980139,MA0072.1;0.237886,MA0073.1;1.07531,MA0074.1;0.458048,MA0076.1;0.0427143,MA0077.1;0.22338,MA0078.1;0.309159,MA0081.1;0.632089,MA0083.1;0.303878,MA0084.1;0.795166,MA0087.1;0.749613,MA0088.1;0.125399,MA0089.1;0,MA0090.1;0.719704,MA0091.1;0.306687,MA0092.1;0.233573,MA0093.1;0.202564,MA0095.1;0,MA0098.1;0,MA0100.1;0.196906,MA0101.1;0.0678785,MA0103.1;0.23558,MA0105.1;0.0189809,MA0106.1;0.0962531,MA0107.1;0.105736,MA0108.2;0.846033,MA0109.1;0,MA0111.1;0.103788,MA0113.1;0.0837682,MA0114.1;0.330264,MA0115.1;0.306529,MA0116.1;0.741163,MA0117.1;0.282986,MA0119.1;4.22711,MA0122.1;0.805881,MA0124.1;0.457493,MA0125.1;0.397116,MA0130.1;0,MA0131.1;0.123911,MA0132.1;0,MA0133.1;0,MA0135.1;0.331697,MA0136.1;1.29185,MA0139.1;0.0432041,MA0140.1;0.435793,MA0141.1;0.72242,MA0142.1;0.499843,MA0143.1;0.3042,MA0144.1;0.102815,MA0145.1;0.587366,MA0146.1;0.000148265,MA0147.1;0.0151274,MA0148.1;0.311778,MA0149.1;0.0153055,MA0062.2;0.177757,MA0035.2;0.444702,MA0039.2;0.00358377,MA0138.2;0.119839,MA0002.2;0.634325,MA0137.2;0.461571,MA0104.2;0.0567349,MA0047.2;0.0745181,MA0112.2;1.36416,MA0065.2;0.154412,MA0150.1;2.54286,MA0151.1;0,MA0152.1;0.934308,MA0153.1;0.911177,MA0154.1;0.0184393,MA0155.1;0.30143,MA0156.1;0.434458,MA0157.1;0.148524,MA0158.1;0,MA0159.1;0.0567806,MA0160.1;0.577497,MA0161.1;0,MA0162.1;0.000370603,MA0163.1;0.00166747,MA0164.1;1.79958,MA0080.2;1.22029,MA0018.2;0.240723,MA0099.2;1.7921,MA0079.2;6.98593e-08,MA0102.2;0.844055,MA0258.1;0.895085,MA0259.1;0.203854,MA0442.1;0
}}
}}

Revision as of 11:20, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:106474684..106474698,-p2@Tex2
Mm9::chr11:106476942..106476974,-p@chr11:106476942..106476974
-
Mm9::chr11:82598872..82598880,+p@chr11:82598872..82598880
+
Mm9::chr11:98562656..98562660,+p1@Csf3
Mm9::chr12:105246946..105246963,-p@chr12:105246946..105246963
-
Mm9::chr13:37673077..37673087,+p@chr13:37673077..37673087
+
Mm9::chr13:37690588..37690597,+p@chr13:37690588..37690597
+
Mm9::chr13:37690629..37690642,+p@chr13:37690629..37690642
+
Mm9::chr14:41821512..41821541,-p2@5730469M10Rik
Mm9::chr14:41821545..41821564,-p5@5730469M10Rik
Mm9::chr14:41821568..41821575,-p10@5730469M10Rik
Mm9::chr14:41821576..41821587,-p7@5730469M10Rik
Mm9::chr14:41821652..41821653,-p16@5730469M10Rik
Mm9::chr14:41844256..41844259,-p@chr14:41844256..41844259
-
Mm9::chr14:41844272..41844285,-p@chr14:41844272..41844285
-
Mm9::chr14:70215715..70215728,-p@chr14:70215715..70215728
-
Mm9::chr15:37829448..37829462,-p@chr15:37829448..37829462
-
Mm9::chr15:84686971..84686976,-p13@Phf21b
Mm9::chr17:27174755..27174772,+p@chr17:27174755..27174772
+
Mm9::chr17:48572171..48572179,-p3@Apobec2
Mm9::chr17:56874249..56874264,+p@chr17:56874249..56874264
+
Mm9::chr19:28635556..28635573,-p@chr19:28635556..28635573
-
Mm9::chr1:84931664..84931683,-p2@Slc16a14
Mm9::chr3:101640069..101640100,-p1@Mab21l3
Mm9::chr3:152741238..152741255,+p@chr3:152741238..152741255
+
Mm9::chr3:29789930..29789953,+p1@uc008oul.1
Mm9::chr3:92169803..92169812,+p@chr3:92169803..92169812
+
Mm9::chr4:140382459..140382505,-p@chr4:140382459..140382505
-
Mm9::chr4:140391650..140391664,-p@chr4:140391650..140391664
-
Mm9::chr4:140401685..140401700,-p1@Padi1
Mm9::chr5:130695404..130695419,+p6@0610007L01Rik
Mm9::chr5:130756812..130756822,+p@chr5:130756812..130756822
+
Mm9::chr5:136147364..136147370,+p@chr5:136147364..136147370
+
Mm9::chr5:87212132..87212143,-p@chr5:87212132..87212143
-
Mm9::chr5:87212194..87212203,-p@chr5:87212194..87212203
-
Mm9::chr6:108647803..108647813,+p@chr6:108647803..108647813
+
Mm9::chr6:89090986..89091008,+p1@Gm1965
Mm9::chr7:144756289..144756303,-p@chr7:144756289..144756303
-
Mm9::chr7:144756380..144756389,-p@chr7:144756380..144756389
-
Mm9::chr7:26197921..26197932,-p3@Cxcl17
Mm9::chr7:86993059..86993076,-p3@Anpep
Mm9::chr7:96676045..96676058,-p5@Prss23
Mm9::chr8:120238119..120238127,-p@chr8:120238119..120238127
-
Mm9::chr8:122217679..122217695,-p@chr8:122217679..122217695
-
Mm9::chr9:105968829..105968846,-p@chr9:105968829..105968846
-
Mm9::chrX:163056592..163056598,-p@chrX:163056592..163056598
-
Mm9::chrX:163056608..163056615,-p@chrX:163056608..163056615
-
Mm9::chrX:163056618..163056625,-p@chrX:163056618..163056625
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
female reproductive system4.33e-359
female organism8.23e-2911
female reproductive organ1.47e-258
internal female genitalia2.45e-235
vagina4.85e-141
oviduct6.50e-141
uterus or analog1.55e-131
embryonic uterus1.56e-134
uterus1.56e-134
internal genitalia2.54e-139
reproductive structure1.96e-1226
reproductive system1.96e-1226
reproductive organ7.18e-0924


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000133484
MA0004.10.285415
MA0006.10.0774616
MA0007.10.107576
MA0009.10.236033
MA0014.14.43033e-05
MA0017.10.216196
MA0019.10.126267
MA0024.10.207177
MA0025.10.410131
MA0027.11.74268
MA0028.10.0287792
MA0029.10.193395
MA0030.11.08865
MA0031.10.175589
MA0038.10.259662
MA0040.10.244539
MA0041.10.0142642
MA0042.10.159795
MA0043.10.304463
MA0046.10.260741
MA0048.10.0436434
MA0050.10.151807
MA0051.10.0784768
MA0052.10.250075
MA0055.10.0143943
MA0056.10
MA0057.10.0329326
MA0058.10.151619
MA0059.10.0627762
MA0060.10.251707
MA0061.10.101922
MA0063.10
MA0066.10.0704666
MA0067.10.502189
MA0068.10.57366
MA0069.10.250309
MA0070.11.26622
MA0071.10.980139
MA0072.10.237886
MA0073.11.07531
MA0074.10.458048
MA0076.10.0427143
MA0077.10.22338
MA0078.10.309159
MA0081.10.632089
MA0083.10.303878
MA0084.10.795166
MA0087.10.749613
MA0088.10.125399
MA0089.10
MA0090.10.719704
MA0091.10.306687
MA0092.10.233573
MA0093.10.202564
MA0095.10
MA0098.10
MA0100.10.196906
MA0101.10.0678785
MA0103.10.23558
MA0105.10.0189809
MA0106.10.0962531
MA0107.10.105736
MA0108.20.846033
MA0109.10
MA0111.10.103788
MA0113.10.0837682
MA0114.10.330264
MA0115.10.306529
MA0116.10.741163
MA0117.10.282986
MA0119.14.22711
MA0122.10.805881
MA0124.10.457493
MA0125.10.397116
MA0130.10
MA0131.10.123911
MA0132.10
MA0133.10
MA0135.10.331697
MA0136.11.29185
MA0139.10.0432041
MA0140.10.435793
MA0141.10.72242
MA0142.10.499843
MA0143.10.3042
MA0144.10.102815
MA0145.10.587366
MA0146.10.000148265
MA0147.10.0151274
MA0148.10.311778
MA0149.10.0153055
MA0062.20.177757
MA0035.20.444702
MA0039.20.00358377
MA0138.20.119839
MA0002.20.634325
MA0137.20.461571
MA0104.20.0567349
MA0047.20.0745181
MA0112.21.36416
MA0065.20.154412
MA0150.12.54286
MA0151.10
MA0152.10.934308
MA0153.10.911177
MA0154.10.0184393
MA0155.10.30143
MA0156.10.434458
MA0157.10.148524
MA0158.10
MA0159.10.0567806
MA0160.10.577497
MA0161.10
MA0162.10.000370603
MA0163.10.00166747
MA0164.11.79958
MA0080.21.22029
MA0018.20.240723
MA0099.21.7921
MA0079.26.98593e-08
MA0102.20.844055
MA0258.10.895085
MA0259.10.203854
MA0442.10
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