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MCL coexpression mm9:427: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0004111!1.32e-11!122;UBERON:0000025!3.54e-11!114;UBERON:0002346!1.19e-08!64;UBERON:0003075!1.19e-08!64;UBERON:0007284!1.19e-08!64;UBERON:0010371!4.18e-08!73;UBERON:0000468!7.49e-08!333;UBERON:0004121!2.91e-07!95;UBERON:0000924!2.91e-07!95;UBERON:0006601!2.91e-07!95;UBERON:0003056!5.00e-07!49;UBERON:0000073!7.30e-07!54;UBERON:0000922!7.35e-07!320;UBERON:0010314!9.71e-07!92
|ontology_enrichment_uberon=UBERON:0004111!1.32e-11!122;UBERON:0000025!3.54e-11!114;UBERON:0002346!1.19e-08!64;UBERON:0003075!1.19e-08!64;UBERON:0007284!1.19e-08!64;UBERON:0010371!4.18e-08!73;UBERON:0000468!7.49e-08!333;UBERON:0004121!2.91e-07!95;UBERON:0000924!2.91e-07!95;UBERON:0006601!2.91e-07!95;UBERON:0003056!5.00e-07!49;UBERON:0000073!7.30e-07!54;UBERON:0000922!7.35e-07!320;UBERON:0010314!9.71e-07!92
|tfbs_overrepresentation_for_novel_motifs=0.48778,1.02741,0.144778,0.191238,1.99135,0.583749,0.270195,0.146885,0.15797,0.222734,0.236307,0.260789,0.14716,0.27987,0.295744,0,1.1241,0.260255,0.889823,0.734378,0.121654,0.178741,0.279154,0.0782709,0.149704,0.301898,0.289597,0.216938,0.691298,0.393858,0.595646,0.531719,0.546575,0.101305,0.0880674,3.06026,0.0693463,1.31983,0.0591424,2.60988,0.0770075,0.210373,0.15533,0.0888852,0.532643,0.183361,0.372907,0.6478,0.222853,0.343195,0.426383,0.323798,0.190678,0.661847,0.67813,0.28555,0.722962,0.25091,0.806525,0.283926,0.513661,0.331566,0.69092,0.4166,0.294453,0.451957,0.806865,1.14503,1.26964,1.00145,0.414221,0.153772,0.555534,0.709559,1.54379,0.234413,1.10669,0.363297,1.24575,0.124234,0.155185,1.15703,0.330377,0.139579,0.602212,1.19582,0.0258882,1.33494,0.377064,1.30447,0.873554,0.606796,0.543309,0.0821171,5.67112,0.416353,1.35973,0.545856,0.373124,0.835565,0.523231,1.31644,0.645628,0.4269,1.09022,0.21005,0.478524,0.225669,0.400135,1.26837,0.157325,0.647285,0.124928,0.240232,0.880323,1.41494,1.18923,3.17907,1.12656,0.880181,0.714636,0.398522,0.303371,0.362534,0.932468,0.501574,0.276618,0.53717,1.88792,0.284377,2.58402,0.186072,0.777296,0.296474,0.9011,0.0259009,0.167758,0.211406,0.853868,3.63647,1.27308,0.811357,0.313144,1.33707,0.420352,0.605406,0.375553,1.62988,0.169369,0.27407,1.35331,0.153352,0.66331,1.62305,0.29573,0.739975,0.324625,0.313539,0.483688,0.167568,0.862985,0.601424,0.501973,2.11231,0.417485,0.289792,0.52021,0.719527,0.0201604
|tfbs_overrepresentation_for_novel_motifs=0.48778,1.02741,0.144778,0.191238,1.99135,0.583749,0.270195,0.146885,0.15797,0.222734,0.236307,0.260789,0.14716,0.27987,0.295744,0,1.1241,0.260255,0.889823,0.734378,0.121654,0.178741,0.279154,0.0782709,0.149704,0.301898,0.289597,0.216938,0.691298,0.393858,0.595646,0.531719,0.546575,0.101305,0.0880674,3.06026,0.0693463,1.31983,0.0591424,2.60988,0.0770075,0.210373,0.15533,0.0888852,0.532643,0.183361,0.372907,0.6478,0.222853,0.343195,0.426383,0.323798,0.190678,0.661847,0.67813,0.28555,0.722962,0.25091,0.806525,0.283926,0.513661,0.331566,0.69092,0.4166,0.294453,0.451957,0.806865,1.14503,1.26964,1.00145,0.414221,0.153772,0.555534,0.709559,1.54379,0.234413,1.10669,0.363297,1.24575,0.124234,0.155185,1.15703,0.330377,0.139579,0.602212,1.19582,0.0258882,1.33494,0.377064,1.30447,0.873554,0.606796,0.543309,0.0821171,5.67112,0.416353,1.35973,0.545856,0.373124,0.835565,0.523231,1.31644,0.645628,0.4269,1.09022,0.21005,0.478524,0.225669,0.400135,1.26837,0.157325,0.647285,0.124928,0.240232,0.880323,1.41494,1.18923,3.17907,1.12656,0.880181,0.714636,0.398522,0.303371,0.362534,0.932468,0.501574,0.276618,0.53717,1.88792,0.284377,2.58402,0.186072,0.777296,0.296474,0.9011,0.0259009,0.167758,0.211406,0.853868,3.63647,1.27308,0.811357,0.313144,1.33707,0.420352,0.605406,0.375553,1.62988,0.169369,0.27407,1.35331,0.153352,0.66331,1.62305,0.29573,0.739975,0.324625,0.313539,0.483688,0.167568,0.862985,0.601424,0.501973,2.11231,0.417485,0.289792,0.52021,0.719527,0.0201604
|tfbs_overrepresentation_jaspar=MA0003.1;0.22902,MA0004.1;1.67902,MA0006.1;0.289293,MA0007.1;2.30376,MA0009.1;0.5557,MA0014.1;4.966,MA0017.1;0.328722,MA0019.1;0.394308,MA0024.1;0.516087,MA0025.1;0.773017,MA0027.1;2.16618,MA0028.1;0.304586,MA0029.1;0.496599,MA0030.1;0.502474,MA0031.1;0.470779,MA0038.1;0.301835,MA0040.1;0.567108,MA0041.1;0.854076,MA0042.1;0.412259,MA0043.1;0.644695,MA0046.1;0.58854,MA0048.1;0.0629374,MA0050.1;0.219748,MA0051.1;0.309072,MA0052.1;0.574473,MA0055.1;2.71055,MA0056.1;0,MA0057.1;3.89223,MA0058.1;1.88608,MA0059.1;4.99463,MA0060.1;0.0476793,MA0061.1;1.2506,MA0063.1;0,MA0066.1;0.293002,MA0067.1;0.879099,MA0068.1;2.37232,MA0069.1;6.02805,MA0070.1;0.565924,MA0071.1;0.219128,MA0072.1;0.558195,MA0073.1;51.905,MA0074.1;0.731206,MA0076.1;0.110983,MA0077.1;0.538513,MA0078.1;0.336143,MA0081.1;0.150322,MA0083.1;0.643958,MA0084.1;1.1979,MA0087.1;0.604077,MA0088.1;0.336188,MA0089.1;0,MA0090.1;2.93918,MA0091.1;0.200988,MA0092.1;0.167962,MA0093.1;0.653128,MA0095.1;0,MA0098.1;0,MA0100.1;0.255651,MA0101.1;0.435524,MA0103.1;0.345124,MA0105.1;1.07876,MA0106.1;0.342589,MA0107.1;1.66818,MA0108.2;0.413973,MA0109.1;0,MA0111.1;0.177475,MA0113.1;0.319332,MA0114.1;1.23875,MA0115.1;0.647296,MA0116.1;1.01433,MA0117.1;0.617392,MA0119.1;0.859235,MA0122.1;0.635764,MA0124.1;0.828115,MA0125.1;0.757653,MA0130.1;0,MA0131.1;0.390422,MA0132.1;0,MA0133.1;0,MA0135.1;0.67864,MA0136.1;0.280269,MA0139.1;0.601065,MA0140.1;0.255562,MA0141.1;1.23603,MA0142.1;0.457961,MA0143.1;0.332773,MA0144.1;0.219807,MA0145.1;1.15707,MA0146.1;0.68528,MA0147.1;1.31676,MA0148.1;0.587598,MA0149.1;0.144679,MA0062.2;0.102085,MA0035.2;0.259203,MA0039.2;1.68153,MA0138.2;1.76837,MA0002.2;0.145768,MA0137.2;0.116005,MA0104.2;1.46099,MA0047.2;1.47806,MA0112.2;0.370684,MA0065.2;1.16061,MA0150.1;0.53401,MA0151.1;0,MA0152.1;0.301303,MA0153.1;0.694211,MA0154.1;0.325394,MA0155.1;0.66805,MA0156.1;0.110475,MA0157.1;0.429861,MA0158.1;0,MA0159.1;0.250417,MA0160.1;0.205397,MA0161.1;0,MA0162.1;6.56395,MA0163.1;2.93344,MA0164.1;0.280556,MA0080.2;0.103116,MA0018.2;0.288261,MA0099.2;0.37828,MA0079.2;44.9843,MA0102.2;1.24942,MA0258.1;0.765596,MA0259.1;1.26238,MA0442.1;0
}}
}}

Revision as of 11:44, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr14:122864178..122864180,+p@chr14:122864178..122864180
+
Mm9::chr17:35839161..35839173,-p16@Ddr1
Mm9::chr17:35839242..35839319,-p7@Ddr1
Mm9::chr1:72871056..72871075,+p1@Igfbp2
Mm9::chr1:72871087..72871096,+p5@Igfbp2
Mm9::chr1:72871104..72871115,+p4@Igfbp2
Mm9::chr1:72871120..72871131,+p2@Igfbp2
Mm9::chr1:72871140..72871151,+p3@Igfbp2
Mm9::chr1:72895817..72895840,-p@chr1:72895817..72895840
-
Mm9::chr1:72895860..72895873,-p@chr1:72895860..72895873
-
Mm9::chr1:72898852..72898887,-p@chr1:72898852..72898887
-
Mm9::chr3:95708554..95708569,-p1@Car14
Mm9::chr3:95708606..95708615,-p3@Car14
Mm9::chr3:95708621..95708633,-p2@Car14
Mm9::chr7:29152679..29152684,-p@chr7:29152679..29152684
-
Mm9::chr9:63869510..63869530,-p10@Smad6
Mm9::chr9:90150770..90150781,-p3@Tbc1d2b
Mm9::chrX:55284180..55284195,+p2@Zic3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
oligodendrocyte precursor cell4.13e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.22902
MA0004.11.67902
MA0006.10.289293
MA0007.12.30376
MA0009.10.5557
MA0014.14.966
MA0017.10.328722
MA0019.10.394308
MA0024.10.516087
MA0025.10.773017
MA0027.12.16618
MA0028.10.304586
MA0029.10.496599
MA0030.10.502474
MA0031.10.470779
MA0038.10.301835
MA0040.10.567108
MA0041.10.854076
MA0042.10.412259
MA0043.10.644695
MA0046.10.58854
MA0048.10.0629374
MA0050.10.219748
MA0051.10.309072
MA0052.10.574473
MA0055.12.71055
MA0056.10
MA0057.13.89223
MA0058.11.88608
MA0059.14.99463
MA0060.10.0476793
MA0061.11.2506
MA0063.10
MA0066.10.293002
MA0067.10.879099
MA0068.12.37232
MA0069.16.02805
MA0070.10.565924
MA0071.10.219128
MA0072.10.558195
MA0073.151.905
MA0074.10.731206
MA0076.10.110983
MA0077.10.538513
MA0078.10.336143
MA0081.10.150322
MA0083.10.643958
MA0084.11.1979
MA0087.10.604077
MA0088.10.336188
MA0089.10
MA0090.12.93918
MA0091.10.200988
MA0092.10.167962
MA0093.10.653128
MA0095.10
MA0098.10
MA0100.10.255651
MA0101.10.435524
MA0103.10.345124
MA0105.11.07876
MA0106.10.342589
MA0107.11.66818
MA0108.20.413973
MA0109.10
MA0111.10.177475
MA0113.10.319332
MA0114.11.23875
MA0115.10.647296
MA0116.11.01433
MA0117.10.617392
MA0119.10.859235
MA0122.10.635764
MA0124.10.828115
MA0125.10.757653
MA0130.10
MA0131.10.390422
MA0132.10
MA0133.10
MA0135.10.67864
MA0136.10.280269
MA0139.10.601065
MA0140.10.255562
MA0141.11.23603
MA0142.10.457961
MA0143.10.332773
MA0144.10.219807
MA0145.11.15707
MA0146.10.68528
MA0147.11.31676
MA0148.10.587598
MA0149.10.144679
MA0062.20.102085
MA0035.20.259203
MA0039.21.68153
MA0138.21.76837
MA0002.20.145768
MA0137.20.116005
MA0104.21.46099
MA0047.21.47806
MA0112.20.370684
MA0065.21.16061
MA0150.10.53401
MA0151.10
MA0152.10.301303
MA0153.10.694211
MA0154.10.325394
MA0155.10.66805
MA0156.10.110475
MA0157.10.429861
MA0158.10
MA0159.10.250417
MA0160.10.205397
MA0161.10
MA0162.16.56395
MA0163.12.93344
MA0164.10.280556
MA0080.20.103116
MA0018.20.288261
MA0099.20.37828
MA0079.244.9843
MA0102.21.24942
MA0258.10.765596
MA0259.11.26238
MA0442.10
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