UBERON:0005409: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0005409 | |id=UBERON:0005409 | ||
|is_a=UBERON:0000467 | |is_a=UBERON:0000467 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
Revision as of 11:36, 12 September 2014
| Name: | gastrointestinal system | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"alimentary system" RELATED [MA:0000323] "alimentary tract" RELATED [MA:0000323] "gastro-intestinal system" RELATED [FMA:71132] "gastrointestinal (GI) tract" RELATED [GAID:294] "gastrointestinal system" RELATED [FMA:71132] "gastrointestinal tract" RELATED INCONSISTENT [FMA:71132] "GI tract" RELATED [GAID:294] | ||
| Comments: | note that many anatomy ontologies consider this synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class. We have one entity that is part of both gastrointestinal and hepatobiliary systems: hepatopancreatic ampulla |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| part_of: | UBERON:0001007(digestive system) |
Children
| part of: | UBERON:0000160 (intestine),UBERON:0004782 (gastrointestinal system serosa),UBERON:0004786 (gastrointestinal system mucosa),UBERON:0004808 (gastrointestinal system epithelium),UBERON:0004854 (gastrointestinal system mesentery),UBERON:0004907 (lower digestive tract),UBERON:0010039 (food storage organ) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10062-101H8 (stomach, fetal, donor1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10062-101H8 (stomach, fetal, donor1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
- 10082-102B1 (colon, adult, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005409 (gastrointestinal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.24e-79 | FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_a13794892800fbc73a80f06e78d751a8 | p2@NKX2-3 |
| 7.24e-79 | FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_a13794892800fbc73a80f06e78d751a8 | p2@NKX2-3 |
| 3.21e-68 | FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_987382a7a1c1ad2eab0fb75504835a30 | p2@FABP2 |
| 3.21e-68 | FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_987382a7a1c1ad2eab0fb75504835a30 | p2@FABP2 |
| 2.48e-66 | FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_06c63d7048c356cc46281e8b8a69447a | p3@CDX2 |
| 2.48e-66 | FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_06c63d7048c356cc46281e8b8a69447a | p3@CDX2 |
| 1.65e-64 | FFCP PHASE1:Hg19::chr5:180326145..180326166,+#_1f8956495c3d78489e6a8522fb0fbe8f | p1@BTNL8 |
| 1.65e-64 | FFCP PHASE2:Hg19::chr5:180326145..180326166,+#_1f8956495c3d78489e6a8522fb0fbe8f | p1@BTNL8 |
| 4.78e-61 | FFCP PHASE1:Hg19::chr16:1275258..1275289,-#_53b7626d17f47c95654f7c2fbc6d5cd5 | p1@TPSG1 |
| 4.78e-61 | FFCP PHASE2:Hg19::chr16:1275258..1275289,-#_53b7626d17f47c95654f7c2fbc6d5cd5 | p1@TPSG1 |
| 6.32e-61 | FFCP PHASE2:Hg19::chr14:103389369..103389380,+#_13625d0e7b1ab11b644245a9e952de75 | p3@AMN |
| 6.32e-61 | FFCP PHASE1:Hg19::chr14:103389369..103389380,+#_13625d0e7b1ab11b644245a9e952de75 | p3@AMN |
| 7.8e-61 | FFCP PHASE1:Hg19::chr1:167059763..167059776,-#_940f7b36a6335d69ff933b2cbfdfad90 | p4@GPA33 |
| 7.8e-61 | FFCP PHASE2:Hg19::chr1:167059763..167059776,-#_940f7b36a6335d69ff933b2cbfdfad90 | p4@GPA33 |
| 8.09e-60 | FFCP PHASE1:Hg19::chr17:48844868..48844891,-#_f8dcf21d0b5e928b47bbec210a3d5539 | p1@LINC00483 |
| 8.09e-60 | FFCP PHASE2:Hg19::chr17:48844868..48844891,-#_f8dcf21d0b5e928b47bbec210a3d5539 | p1@LINC00483 |
| 1.36e-58 | FFCP PHASE1:Hg19::chr2:241544866..241544882,+#_e83330d0261b17abc1a6b9f826c9c125 | p4@GPR35 |
| 1.36e-58 | FFCP PHASE2:Hg19::chr2:241544866..241544882,+#_e83330d0261b17abc1a6b9f826c9c125 | p4@GPR35 |
| 1.24e-57 | FFCP PHASE2:Hg19::chrX:65382664..65382675,+#_5892f611a0cf1794a058b80bce45db62 | p8@HEPH |
| 1.24e-57 | FFCP PHASE1:Hg19::chrX:65382664..65382675,+#_5892f611a0cf1794a058b80bce45db62 | p8@HEPH |
| 1.25e-56 | FFCP PHASE2:Hg19::chr17:48844903..48844922,-#_6be26110b96608617d8dd9de3a7430f8 | p2@LINC00483 |
| 1.25e-56 | FFCP PHASE1:Hg19::chr17:48844903..48844922,-#_6be26110b96608617d8dd9de3a7430f8 | p2@LINC00483 |
| 1.74e-56 | FFCP PHASE1:Hg19::chr19:50691437..50691453,+#_b6cd9cfe4773abcab66d10ac86b922b8 | p2@MYH14 |
| 1.74e-56 | FFCP PHASE2:Hg19::chr19:50691437..50691453,+#_b6cd9cfe4773abcab66d10ac86b922b8 | p2@MYH14 |
| 9.28e-56 | FFCP PHASE1:Hg19::chr13:28543316..28543329,-#_37410ce03fb214aef0aea4f160c9f259 | p4@CDX2 |
| 9.28e-56 | FFCP PHASE2:Hg19::chr13:28543316..28543329,-#_37410ce03fb214aef0aea4f160c9f259 | p4@CDX2 |
| 2.38e-55 | FFCP PHASE2:Hg19::chr14:47203595..47203635,-#_de3df431cd242c131f02bb7e179d842a | p@chr14:47203595..47203635, - |
| 2.38e-55 | FFCP PHASE2:Hg19::chr2:128293323..128293332,+#_de3df431cd242c131f02bb7e179d842a | p4@MYO7B |
| 2.38e-55 | FFCP PHASE1:Hg19::chr14:47203595..47203635,-#_de3df431cd242c131f02bb7e179d842a | p@chr14:47203595..47203635, - |
| 2.38e-55 | FFCP PHASE1:Hg19::chr2:128293323..128293332,+#_de3df431cd242c131f02bb7e179d842a | p4@MYO7B |
| 2.7e-55 | FFCP PHASE2:Hg19::chr8:48911486..48911495,-#_4ed92c238b334165470c8b4bfbf74a9a | p@chr8:48911486..48911495, - |
| 2.7e-55 | FFCP PHASE1:Hg19::chr8:48911486..48911495,-#_4ed92c238b334165470c8b4bfbf74a9a | p@chr8:48911486..48911495, - |
| 3.85e-54 | FFCP PHASE1:Hg19::chr6:80340818..80340825,+#_97a6e40d0373c365d955e0134c2cc674 | p7@SH3BGRL2 |
| 3.85e-54 | FFCP PHASE2:Hg19::chr6:80340818..80340825,+#_97a6e40d0373c365d955e0134c2cc674 | p7@SH3BGRL2 |
| 7.96e-54 | FFCP PHASE1:Hg19::chr8:95220775..95220820,-#_d8a0f55bb98b9ade4fc1825cbd9bca22 | p1@CDH17 |
| 7.96e-54 | FFCP PHASE2:Hg19::chr8:95220775..95220820,-#_d8a0f55bb98b9ade4fc1825cbd9bca22 | p1@CDH17 |
| 1.44e-53 | FFCP PHASE1:Hg19::chr5:180415839..180415851,+#_3dd89464ffbee7bf97a911f5ca13486a | p2@BTNL3 |
| 1.44e-53 | FFCP PHASE1:Hg19::chr2:201242699..201242710,+#_3dd89464ffbee7bf97a911f5ca13486a | p23@SPATS2L |
| 1.44e-53 | FFCP PHASE2:Hg19::chr2:201242699..201242710,+#_3dd89464ffbee7bf97a911f5ca13486a | p23@SPATS2L |
| 1.44e-53 | FFCP PHASE2:Hg19::chr5:180415839..180415851,+#_3dd89464ffbee7bf97a911f5ca13486a | p2@BTNL3 |
| 1.56e-53 | FFCP PHASE2:Hg19::chrX:65382622..65382653,+#_204bfd7c65b9c6935425da5fb52e6d42 | p3@HEPH |
| 1.56e-53 | FFCP PHASE1:Hg19::chrX:65382622..65382653,+#_204bfd7c65b9c6935425da5fb52e6d42 | p3@HEPH |
| 2.35e-53 | FFCP PHASE1:Hg19::chr19:55720809..55720819,-#_88ccdf5c9093759a576159da55a7ca22 | p3@PTPRH |
| 2.35e-53 | FFCP PHASE2:Hg19::chr19:55720809..55720819,-#_88ccdf5c9093759a576159da55a7ca22 | p3@PTPRH |
| 4.32e-53 | FFCP PHASE1:Hg19::chr10:101292921..101292931,+#_bc1f9c82988b93e3c7775dc70cc6e31e | p4@NKX2-3 |
| 4.32e-53 | FFCP PHASE1:Hg19::chr12:12223888..12223897,+#_bc1f9c82988b93e3c7775dc70cc6e31e | p6@BCL2L14 |
| 4.32e-53 | FFCP PHASE2:Hg19::chr10:101292921..101292931,+#_bc1f9c82988b93e3c7775dc70cc6e31e | p4@NKX2-3 |
| 4.32e-53 | FFCP PHASE2:Hg19::chr1:45253840..45253843,-#_bc1f9c82988b93e3c7775dc70cc6e31e | p1@BEST4 |
| 4.32e-53 | FFCP PHASE1:Hg19::chr1:45253840..45253843,-#_bc1f9c82988b93e3c7775dc70cc6e31e | p1@BEST4 |
| 4.32e-53 | FFCP PHASE2:Hg19::chr12:12223888..12223897,+#_bc1f9c82988b93e3c7775dc70cc6e31e | p6@BCL2L14 |
| 5.51e-53 | FFCP PHASE2:Hg19::chr11:69294647..69294668,-#_e46796c83a1c1af4c2be39a8c50b4a2d | p1@ENST00000542064 |
| 5.51e-53 | FFCP PHASE1:Hg19::chr11:69294647..69294668,-#_e46796c83a1c1af4c2be39a8c50b4a2d | p1@ENST00000542064 |
| 9.43e-52 | FFCP PHASE1:Hg19::chr13:28543431..28543487,-#_a93947db35d0318688a47ff3d64a13f9 | p1@CDX2 |
| 9.43e-52 | FFCP PHASE2:Hg19::chr13:28543431..28543487,-#_a93947db35d0318688a47ff3d64a13f9 | p1@CDX2 |
| 4.78e-51 | FFCP PHASE2:Hg19::chr1:120354079..120354091,-#_49143aa488105baf7d5ff04e4b8be17b | p1@REG4 |
| 4.78e-51 | FFCP PHASE1:Hg19::chr1:120354079..120354091,-#_49143aa488105baf7d5ff04e4b8be17b | p1@REG4 |
| 8.9e-51 | FFCP PHASE1:Hg19::chr16:75569970..75570015,-#_34759ce0e8db8bcc3f5977ee58d41128 | p@chr16:75569970..75570015, - |
| 8.9e-51 | FFCP PHASE2:Hg19::chr16:75569970..75570015,-#_34759ce0e8db8bcc3f5977ee58d41128 | p@chr16:75569970..75570015, - |
| 1.07e-50 | FFCP PHASE2:Mm9::chr1:74455772..74455802,+#_36b3ee031d6fe72de7acabfa9c3c7747 | p2@Vil1 |
| 1.07e-50 | FFCP PHASE1:Mm9::chr1:74455772..74455802,+#_36b3ee031d6fe72de7acabfa9c3c7747 | p2@Vil1 |
| 1.17e-50 | FFCP PHASE2:Mm9::chr11:58203590..58203637,+#_922144388e0e12e563461fa8cd07e5a1 | p@chr11:58203590..58203637, + |
| 1.17e-50 | FFCP PHASE1:Mm9::chr11:58203590..58203637,+#_922144388e0e12e563461fa8cd07e5a1 | p@chr11:58203590..58203637, + |
| 1.59e-50 | FFCP PHASE1:Hg19::chr15:41224934..41224945,-#_43f3ee1d4aa7288da1082b1513a7ee91 | p@chr15:41224934..41224945, - |
| 1.59e-50 | FFCP PHASE2:Hg19::chr15:41224934..41224945,-#_43f3ee1d4aa7288da1082b1513a7ee91 | p@chr15:41224934..41224945, - |
| 1.71e-50 | FFCP PHASE1:Mm9::chr11:58198109..58198122,+#_557238971b30da40df187da33985949b | p@chr11:58198109..58198122, + |
| 1.71e-50 | FFCP PHASE2:Mm9::chr11:58198109..58198122,+#_557238971b30da40df187da33985949b | p@chr11:58198109..58198122, + |
| 2.14e-50 | FFCP PHASE2:Mm9::chr19:39135488..39135505,+#_59f6e12f9ae00e85ef492a7e84115a88 | p1@Cyp2c65 |
| 2.14e-50 | FFCP PHASE1:Mm9::chr19:39135488..39135505,+#_59f6e12f9ae00e85ef492a7e84115a88 | p1@Cyp2c65 |
| 5.9e-50 | FFCP PHASE1:Hg19::chr7:107443661..107443675,-#_5a190da46903e786d4b875db6906409c | p1@SLC26A3 |
| 5.9e-50 | FFCP PHASE2:Hg19::chr7:107443661..107443675,-#_5a190da46903e786d4b875db6906409c | p1@SLC26A3 |
| 7.25e-50 | FFCP PHASE1:Hg19::chr5:180326100..180326136,+#_4e949b0851ceba0914ad2ce80acd06a2 | p2@BTNL8 |
| 7.25e-50 | FFCP PHASE2:Hg19::chr5:180326100..180326136,+#_4e949b0851ceba0914ad2ce80acd06a2 | p2@BTNL8 |
| 7.64e-50 | FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_fbd3ab94188d3bdbcb7c3a0787717dd6 | p8@CDX2 |
| 7.64e-50 | FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_fbd3ab94188d3bdbcb7c3a0787717dd6 | p8@CDX2 |
| 2.06e-49 | FFCP PHASE1:Mm9::chr11:58195782..58195801,+#_67c8180e87fd5989ab095d0a42b590ab | p@chr11:58195782..58195801, + |
| 2.06e-49 | FFCP PHASE2:Mm9::chr11:58195782..58195801,+#_67c8180e87fd5989ab095d0a42b590ab | p@chr11:58195782..58195801, + |
| 4.09e-49 | FFCP PHASE2:Mm9::chr10:127140579..127140608,+#_d3db12c0b9d224c3c7d5c6707f29d3bb | p@chr10:127140579..127140608, + |
| 4.09e-49 | FFCP PHASE1:Mm9::chr10:127140579..127140608,+#_d3db12c0b9d224c3c7d5c6707f29d3bb | p@chr10:127140579..127140608, + |
| 4.18e-49 | FFCP PHASE2:Mm9::chr8:108804944..108804958,-#_3cd51582607a610a51ab06fc700bd47e | p5@Smpd3 |
| 4.18e-49 | FFCP PHASE1:Mm9::chr8:108804944..108804958,-#_3cd51582607a610a51ab06fc700bd47e | p5@Smpd3 |
| 5.91e-49 | FFCP PHASE2:Mm9::chr11:58203659..58203736,+#_9fccf4e690237426eab8430071017304 | p@chr11:58203659..58203736, + |
| 5.91e-49 | FFCP PHASE1:Mm9::chr11:58203659..58203736,+#_9fccf4e690237426eab8430071017304 | p@chr11:58203659..58203736, + |
| 8.08e-49 | FFCP PHASE2:Hg19::chr19:748430..748446,+#_1ea08b350f53b3e246ab163c0577cd8b | p@chr19:748430..748446, + |
| 8.08e-49 | FFCP PHASE1:Hg19::chr19:748430..748446,+#_1ea08b350f53b3e246ab163c0577cd8b | p@chr19:748430..748446, + |
| 1.85e-48 | FFCP PHASE2:Mm9::chr7:19851891..19851932,-#_21bb9f7c45710f261857cfec41206494 | p@chr7:19851891..19851932, - |
| 1.85e-48 | FFCP PHASE1:Mm9::chr7:19851891..19851932,-#_21bb9f7c45710f261857cfec41206494 | p@chr7:19851891..19851932, - |
| 2.72e-48 | FFCP PHASE2:Mm9::chr11:58195835..58195850,+#_4e1e7a944f283396b5c4d2bfcbac148b | p@chr11:58195835..58195850, + |
| 2.72e-48 | FFCP PHASE1:Mm9::chr11:58195835..58195850,+#_4e1e7a944f283396b5c4d2bfcbac148b | p@chr11:58195835..58195850, + |
| 2.98e-48 | FFCP PHASE1:Mm9::chr8:67653423..67653439,-#_0ee655f6e68147bb1db79c10526be90d | p3@BC030870 |
| 2.98e-48 | FFCP PHASE2:Mm9::chr8:67653423..67653439,-#_0ee655f6e68147bb1db79c10526be90d | p3@BC030870 |
| 3.13e-48 | FFCP PHASE1:Hg19::chr1:167059674..167059697,-#_f3dbd31d9d87c0f30729f58ebf23d0b6 | p3@GPA33 |
| 3.13e-48 | FFCP PHASE2:Hg19::chr1:167059674..167059697,-#_f3dbd31d9d87c0f30729f58ebf23d0b6 | p3@GPA33 |
| 3.13e-48 | FFCP PHASE1:Hg19::chr12:27849378..27849385,+#_f3dbd31d9d87c0f30729f58ebf23d0b6 | p1@REP15 |
| 3.13e-48 | FFCP PHASE2:Hg19::chr12:27849378..27849385,+#_f3dbd31d9d87c0f30729f58ebf23d0b6 | p1@REP15 |
| 4.24e-48 | FFCP PHASE2:Mm9::chr8:108804912..108804931,-#_7d8fe8d0b117a2bb34026879f61dd46e | p3@Smpd3 |
| 4.24e-48 | FFCP PHASE1:Mm9::chr8:108804912..108804931,-#_7d8fe8d0b117a2bb34026879f61dd46e | p3@Smpd3 |
| 1.18e-47 | FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_1352c93759b761307a6224dc93208081 | p@chr16:86229728..86229756, + |
| 1.18e-47 | FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_1352c93759b761307a6224dc93208081 | p@chr16:86229728..86229756, + |
| 1.75e-47 | FFCP PHASE1:Mm9::chr1:94847277..94847308,-#_e43b1041976a9b6b90a1608d6c2c636a | p1@9430060I03Rik |
| 1.75e-47 | FFCP PHASE2:Mm9::chr1:94847277..94847308,-#_e43b1041976a9b6b90a1608d6c2c636a | p1@9430060I03Rik |
