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MCL coexpression mm9:257: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000466!7.56e-10!79;UBERON:0000475!3.12e-09!150;UBERON:0002100!3.95e-09!90;UBERON:0005177!1.43e-08!79;UBERON:0002553!2.28e-08!39;UBERON:0000468!6.03e-08!333;UBERON:0005172!6.69e-08!49;UBERON:0005173!6.69e-08!49;UBERON:0002417!6.69e-08!49;UBERON:0000916!6.69e-08!49;UBERON:0003886!6.81e-08!38;UBERON:0002323!1.10e-07!37;UBERON:0004458!1.10e-07!37;UBERON:0000467!6.07e-07!308;UBERON:0000480!6.07e-07!308;UBERON:0005256!8.14e-07!45;UBERON:0004119!9.89e-07!118;UBERON:0000925!9.89e-07!118;UBERON:0006595!9.89e-07!118
|tfbs_overrepresentation_for_novel_motifs=0.2121,0.275767,0.0488323,0.554666,0.982854,0.279466,0.1276,1.08451,0.842622,0.234537,0.104348,0.384124,0.541446,0.418601,0.447409,0,0.259755,0.383396,0.0717318,0.620721,0.339522,0.537836,0.417302,0.206942,0.191624,0.458764,0.446281,0.306197,0.118643,0.168435,0.288134,0.892346,0.377726,0.372412,0.727991,0.0366212,0.0688799,0.379077,0.149689,0.00760901,0.39333,0.294713,0.830337,0.733822,0.293455,0.0707419,0.204367,0.0992908,0.482168,0.289613,0.247239,0.166621,0.153829,0.451112,0.465864,0.138517,0.885377,0.114218,0.05695,0.137352,0.320373,0.172475,0.404745,0.239273,0.44515,0.268299,0.584509,0.907487,0.316778,0.768874,0.164033,0.0920321,0.00701899,0.494514,0.0518455,0.105383,0.222546,0.196848,0.828076,0.347468,0.201574,0.272401,0.171576,0.513774,0.397678,5.7366e-05,0.0388832,0.0842698,0.207637,1.06309,0.64713,0.40175,0.34595,2.30622,0.0529479,0.12221,0.0835096,0.348163,0.204536,0.224173,0.354785,0.335693,0.436484,0.247661,0.246912,0.0872264,0.290513,0.321548,0.356705,0.0375205,0.449672,0.437975,0.629125,0.347343,0.653522,0.388768,0.10172,0.266186,0.260696,0.869274,0.499163,0.638433,0.151457,1.08366,0.702969,0.310043,0.132139,0.340627,0.58316,0.696521,0.422342,0.252711,0.556974,0.146415,0.673182,0.372876,0.22165,0.617124,0.628575,1.42304,1.03234,0.588705,0.158669,0.344113,0.242322,0.295293,0.595289,1.38398,0.486947,0.212062,0.173996,0.00084391,0.452434,0.461241,0.145874,0.522448,0.500553,0.104561,0.209338,0.0614775,0.637161,1.02707,0.310383,0.445014,0.239991,0.436647,0.0681421,0.12017,0.0824178
|tfbs_overrepresentation_jaspar=MA0003.1;0.000742834,MA0004.1;0.26216,MA0006.1;0.0915448,MA0007.1;0.894156,MA0009.1;0.356735,MA0014.1;0.00213988,MA0017.1;0.272987,MA0019.1;1.18129,MA0024.1;0.322453,MA0025.1;0.553002,MA0027.1;1.91746,MA0028.1;0.099689,MA0029.1;0.824884,MA0030.1;0.31081,MA0031.1;0.284004,MA0038.1;0.458648,MA0040.1;0.366712,MA0041.1;0.0464556,MA0042.1;0.1628,MA0043.1;0.435645,MA0046.1;0.385571,MA0048.1;0.0610475,MA0050.1;0.311127,MA0051.1;0.155655,MA0052.1;0.373177,MA0055.1;4.86886,MA0056.1;0,MA0057.1;0.193506,MA0058.1;0.358248,MA0059.1;0.168372,MA0060.1;0.0408731,MA0061.1;0.0117507,MA0063.1;0,MA0066.1;0.143893,MA0067.1;0.652366,MA0068.1;0.205078,MA0069.1;0.373449,MA0070.1;0.365675,MA0071.1;0.0930503,MA0072.1;0.358914,MA0073.1;0.000387491,MA0074.1;1.27449,MA0076.1;0.129763,MA0077.1;0.341791,MA0078.1;1.00244,MA0081.1;0.192641,MA0083.1;0.434982,MA0084.1;0.958921,MA0087.1;0.399335,MA0088.1;0.0953438,MA0089.1;0,MA0090.1;1.26129,MA0091.1;2.63657,MA0092.1;0.221993,MA0093.1;0.259558,MA0095.1;0,MA0098.1;0,MA0100.1;0.117472,MA0101.1;0.177595,MA0103.1;1.67336,MA0105.1;0.045687,MA0106.1;0.18086,MA0107.1;0.0280799,MA0108.2;0.237143,MA0109.1;0,MA0111.1;0.0672442,MA0113.1;0.490789,MA0114.1;0.150918,MA0115.1;0.437985,MA0116.1;0.435156,MA0117.1;1.05806,MA0119.1;0.178209,MA0122.1;0.427622,MA0124.1;0.604388,MA0125.1;0.538769,MA0130.1;0,MA0131.1;0.623192,MA0132.1;0,MA0133.1;0,MA0135.1;0.466327,MA0136.1;0.134737,MA0139.1;0.327748,MA0140.1;0.117411,MA0141.1;0.0350885,MA0142.1;0.751052,MA0143.1;0.173388,MA0144.1;0.801834,MA0145.1;0.308465,MA0146.1;0.264639,MA0147.1;0.0652636,MA0148.1;0.996586,MA0149.1;0.0487792,MA0062.2;0.0495428,MA0035.2;0.119926,MA0039.2;1.9968e-05,MA0138.2;0.212837,MA0002.2;0.784408,MA0137.2;0.922195,MA0104.2;0.0342485,MA0047.2;0.894782,MA0112.2;0.0245567,MA0065.2;1.07042,MA0150.1;0.0692983,MA0151.1;0,MA0152.1;0.149941,MA0153.1;0.480495,MA0154.1;0.0586917,MA0155.1;0.14685,MA0156.1;0.031657,MA0157.1;0.250083,MA0158.1;0,MA0159.1;0.909317,MA0160.1;0.0842824,MA0161.1;0,MA0162.1;0.00788936,MA0163.1;0.0905096,MA0164.1;0.419846,MA0080.2;0.117725,MA0018.2;0.140467,MA0099.2;0.208596,MA0079.2;0.000646144,MA0102.2;1.0092,MA0258.1;0.0481808,MA0259.1;0.15721,MA0442.1;0
}}

Latest revision as of 14:58, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:107599358..107599370,+p7@Ppp1r12a
Mm9::chr10:127838887..127838909,-p@chr10:127838887..127838909
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Mm9::chr10:60895963..60895997,-p@chr10:60895963..60895997
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Mm9::chr10:69631904..69631917,+p@chr10:69631904..69631917
+
Mm9::chr10:80072081..80072096,+p@chr10:80072081..80072096
+
Mm9::chr11:59026013..59026037,-p@chr11:59026013..59026037
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Mm9::chr11:60368447..60368462,+p@chr11:60368447..60368462
+
Mm9::chr11:60536153..60536180,-p@chr11:60536153..60536180
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Mm9::chr11:94075871..94075905,+p@chr11:94075871..94075905
+
Mm9::chr12:52903612..52903639,-p@chr12:52903612..52903639
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Mm9::chr13:49017568..49017587,-p@chr13:49017568..49017587
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Mm9::chr13:54202171..54202191,+p@chr13:54202171..54202191
+
Mm9::chr14:21501964..21501989,+p@chr14:21501964..21501989
+
Mm9::chr14:47930214..47930239,+p@chr14:47930214..47930239
+
Mm9::chr14:70718660..70718676,-p@chr14:70718660..70718676
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Mm9::chr16:32052409..32052436,-p@chr16:32052409..32052436
-
Mm9::chr16:77037641..77037659,+p@chr16:77037641..77037659
+
Mm9::chr16:87719360..87719409,+p@chr16:87719360..87719409
+
Mm9::chr17:35380150..35380172,+p@chr17:35380150..35380172
+
Mm9::chr19:36953750..36953769,+p@chr19:36953750..36953769
+
Mm9::chr19:5646850..5646860,+p@chr19:5646850..5646860
+
Mm9::chr2:164327002..164327016,+p@chr2:164327002..164327016
+
Mm9::chr3:122972610..122972623,+p@chr3:122972610..122972623
+
Mm9::chr3:122996676..122996724,+p@chr3:122996676..122996724
+
Mm9::chr5:100802525..100802546,-p4@Sec31a
Mm9::chr5:138187583..138187602,+p6@Tsc22d4
Mm9::chr5:144266979..144267006,-p@chr5:144266979..144267006
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Mm9::chr6:124912443..124912456,-p@chr6:124912443..124912456
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Mm9::chr6:88465402..88465420,-p@chr6:88465402..88465420
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Mm9::chr7:26533442..26533477,-p@chr7:26533442..26533477
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Mm9::chr7:53306028..53306031,+p@chr7:53306028..53306031
+
Mm9::chr8:73926681..73926699,+p@chr8:73926681..73926699
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
immaterial anatomical entity7.56e-1079
organism subdivision3.12e-09150
trunk3.95e-0990
trunk region element1.43e-0879
anatomical cavity2.28e-0839
multi-cellular organism6.03e-08333
abdomen element6.69e-0849
abdominal segment element6.69e-0849
abdominal segment of trunk6.69e-0849
abdomen6.69e-0849
body cavity precursor6.81e-0838
body cavity1.10e-0737
body cavity or lining1.10e-0737
anatomical system6.07e-07308
anatomical group6.07e-07308
trunk mesenchyme8.14e-0745
endoderm-derived structure9.89e-07118
endoderm9.89e-07118
presumptive endoderm9.89e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000742834
MA0004.10.26216
MA0006.10.0915448
MA0007.10.894156
MA0009.10.356735
MA0014.10.00213988
MA0017.10.272987
MA0019.11.18129
MA0024.10.322453
MA0025.10.553002
MA0027.11.91746
MA0028.10.099689
MA0029.10.824884
MA0030.10.31081
MA0031.10.284004
MA0038.10.458648
MA0040.10.366712
MA0041.10.0464556
MA0042.10.1628
MA0043.10.435645
MA0046.10.385571
MA0048.10.0610475
MA0050.10.311127
MA0051.10.155655
MA0052.10.373177
MA0055.14.86886
MA0056.10
MA0057.10.193506
MA0058.10.358248
MA0059.10.168372
MA0060.10.0408731
MA0061.10.0117507
MA0063.10
MA0066.10.143893
MA0067.10.652366
MA0068.10.205078
MA0069.10.373449
MA0070.10.365675
MA0071.10.0930503
MA0072.10.358914
MA0073.10.000387491
MA0074.11.27449
MA0076.10.129763
MA0077.10.341791
MA0078.11.00244
MA0081.10.192641
MA0083.10.434982
MA0084.10.958921
MA0087.10.399335
MA0088.10.0953438
MA0089.10
MA0090.11.26129
MA0091.12.63657
MA0092.10.221993
MA0093.10.259558
MA0095.10
MA0098.10
MA0100.10.117472
MA0101.10.177595
MA0103.11.67336
MA0105.10.045687
MA0106.10.18086
MA0107.10.0280799
MA0108.20.237143
MA0109.10
MA0111.10.0672442
MA0113.10.490789
MA0114.10.150918
MA0115.10.437985
MA0116.10.435156
MA0117.11.05806
MA0119.10.178209
MA0122.10.427622
MA0124.10.604388
MA0125.10.538769
MA0130.10
MA0131.10.623192
MA0132.10
MA0133.10
MA0135.10.466327
MA0136.10.134737
MA0139.10.327748
MA0140.10.117411
MA0141.10.0350885
MA0142.10.751052
MA0143.10.173388
MA0144.10.801834
MA0145.10.308465
MA0146.10.264639
MA0147.10.0652636
MA0148.10.996586
MA0149.10.0487792
MA0062.20.0495428
MA0035.20.119926
MA0039.21.9968e-05
MA0138.20.212837
MA0002.20.784408
MA0137.20.922195
MA0104.20.0342485
MA0047.20.894782
MA0112.20.0245567
MA0065.21.07042
MA0150.10.0692983
MA0151.10
MA0152.10.149941
MA0153.10.480495
MA0154.10.0586917
MA0155.10.14685
MA0156.10.031657
MA0157.10.250083
MA0158.10
MA0159.10.909317
MA0160.10.0842824
MA0161.10
MA0162.10.00788936
MA0163.10.0905096
MA0164.10.419846
MA0080.20.117725
MA0018.20.140467
MA0099.20.208596
MA0079.20.000646144
MA0102.21.0092
MA0258.10.0481808
MA0259.10.15721
MA0442.10
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