NonredundantMotifs:16: Difference between revisions
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|entrez_gene_id=1051
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CEBPA,B_DDIT3.p2~HLF.p2~NFIL3.p2~ATF2.p2 /HOMER:CEBPB_CEBPb-ChIP-Seq~CEBPB_ThioMa...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=1051 | |entrez_gene_id=1051 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0102.2;CEBPA~MA0019.1;Ddit3::Cebpa~MA0043.1;HLF~MA0025.1;NFIL3 /HOCOMOCO:HLF_si~CEBPE_f1~CEBPA_do~NFIL3_si~CEBPD_f1~CEBPG_si~DBP_si~DDIT3_f1~CEBPB_f1 /SWISSREGULON:CEBPA,B_DDIT3.p2~HLF.p2~NFIL3.p2~ATF2.p2 /HOMER:CEBPB_CEBPb-ChIP-Seq~CEBPB_ThioMac-CEBPb-ChIP-Seq | ||
|name=known16 | |name=known16 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known16
- db :HOCOMOCO
- Id :CEBPB_f1
- name :
- score :0.6507758725357089
- External refs:
- Internal refs:
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Sub Motif Members
