NonredundantMotifs:20: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.166568766856209;0.264627108388554;0.345569142484832;0.223234982270405!2;0.33559928597741;0.314450610927775;0.153335527947911;0.196614575146903!3;0.105350177962422;0.231838574306408;0.348017956536648;0.314793291194522!4;0.131273546627942;0.215623354635515;0.291288121053264;0.361814977683279!5;0.125569694828312;0.0723405433039333;0.404847922626842;0.397241839240913!6;0.0498787196364293;0.0391102710274104;0.325166661310853;0.585844348025307!7;0.705097892800264;0.009201616401007;0.284757379772287;0.000943111026442243!8;0.00353499698110437;0.986983062531775;0.0042753772905585;0.00520656319656203!9;0.00520656319656203;0.0042753772905585;0.986983062531775;0.00353499698110437!10;0.000943111026442243;0.284757379772287;0.009201616401007;0.705097892800264!11;0.585844348025307;0.325166661310853;0.0391102710274104;0.0498787196364293!12;0.397241839240913;0.404847922626842;0.0723405433039333;0.125569694828312!13;0.20685699747934;0.234554986714772;0.371730556802614;0.186857459003274!14;0.435956762345371;0.145114819741633;0.181032594493967;0.237895823419029!15;0.176103786632641;0.260126809366949;0.230769700644802;0.332999703355608!16;0.272101580475796;0.213365385159242;0.312031811553531;0.202501222811432!17;0.237402122772389;0.250981758957196;0.266976765334794;0.244639352935621 | |||
|entrez_gene_id=10691 | |entrez_gene_id=10691 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:JUN.p2~CREB1.p2~ATF5_CREB3.p2~ATF4.p2 /JASPAR:MA0018.2;CREB1 /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq /UNIPROBE:Jundm2_primary;SCI09~Gmeb1_primary;SCI09~Atf1_primary;SCI09 /HOCOMOCO:ATF3_f1~E4F1_f1~ATF2+ATF4_f1~ATF1_si~CREM_f1~CREB1_f1 | ||
|name=known20 | |name=known20 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
Revision as of 10:45, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known20
- db :UNIPROBE
- Id :Gmeb1_primary
- name :SCI09
- score :0.6275573267230993
- External refs:
- Internal refs:
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Sub Motif Members
