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Revision as of 17:23, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant194
  • db :SWISSREGULON
  • Id :NANOG(mouse).p2
  • name :NANOG(mouse)
  • score :0.05590746534872926
  • External refs:
EntrezGene:NANOG(mouse)
UniProt:NANOG(mouse)

  • Internal refs:
EntrezGene:NANOG(mouse)


Motif matrix
POACGT
0120.0015.0055.0010.00
0221.0012.0061.006.00
0324.001.0074.001.00
0434.0036.0029.001.00
058.0862.630.0029.29
061.0098.001.000.00
0798.001.000.001.00
083.000.003.0094.00
090.001.000.0099.00
1016.002.0033.0049.00
1120.0062.0010.008.00
120.00100.000.000.00

Sub Motif Members