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Revision as of 09:49, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant129
  • db :SWISSREGULON
  • Id :EN1,2.p2
  • name :EN1,2
  • score :0.0732614741890113
  • External refs:
EntrezGene:EN1
UniProt:EN1

EntrezGene:2
UniProt:2

  • Internal refs:
EntrezGene:EN1

EntrezGene:2


Motif matrix
POACGT
165.5561995.98198123.72914523.481068
273.4673326.86730734.3880534.025701
340.1475570.54088777.547380.512569
40.3208913.19164811.025355104.210499
550.8819870.94049848.99965717.926251
630.8134660.94964186.8306430.154643
728.9747180.9655930.46086488.347218
815.1966534.31612458.61672940.618887
96.18550938.88582932.43236741.244688
102.90581856.3252171.731357.786058
113.37255583.3098372.78483929.281162

Sub Motif Members