FFCP PHASE1:Hg19::chr11:61449964..61449980,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:61449964..61449980,+|id=chr11:61449964..61449980,+|ontology_enrichment_celltype=CL:0002139!1.12e-12!24;CL:0005020!3.34e-11!6;CL:0002138!3.34e-11!6;CL:0005022!3.34e-11!6;CL:0000115!8.13e-08!35;CL:0000181!1.08e-07!12;CL:0000417!1.08e-07!12;CL:0000668!1.08e-07!12;CL:0000414!1.08e-07!12;CL:0000412!1.08e-07!12;CL:0000182!1.08e-07!12;CL:0002618!1.30e-07!3|ontology_enrichment_celltype_v019=CL:0000182;2.11e-19;12!CL:0002563;3.94e-15;4!CL:0002138;2.64e-10;6!CL:0002253;2.48e-08;2|ontology_enrichment_celltype_v019_2=CL:0000182,1.92e-19,12;CL:0002563,3.94e-15,4;CL:0000223,1.32e-11,58;CL:0005020,3.04e-10,6;CL:0002138,3.04e-10,6;CL:0005022,3.04e-10,6;CL:0002253,2.67e-08,2;CL:0000066,3.68e-08,253|ontology_enrichment_development_v019=UBERON:0003104;4.75e-22;31!UBERON:0004161;3.95e-21;11!UBERON:0009497;6.15e-18;13!CL:0005022;2.64e-10;6!UBERON:0001041;6.30e-08;30!CL:0000223;1.93e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3119;8.31e-10;14!DOID:7;1.80e-08;39|ontology_enrichment_disease_v019_2=DOID:3119,8.70e-10,14;DOID:7,3.80e-09,39;DOID:305,6.76e-08,106|ontology_enrichment_uberon=UBERON:0002465!7.97e-09!10;UBERON:0001473!2.81e-08!8;UBERON:0004536!2.81e-08!8;UBERON:0006558!2.81e-08!8|ontology_enrichment_uberon_v019=UBERON:0001389;2.38e-15;1!UBERON:0000026;2.38e-15;1!UBERON:0008784;2.38e-15;1!UBERON:0006058;2.38e-15;1!UBERON:0003663;2.38e-15;1!UBERON:0004256;2.38e-15;1!UBERON:0004708;2.38e-15;1!UBERON:0002101;2.38e-15;1!UBERON:0004709;2.38e-15;1!UBERON:0002529;2.38e-15;1!UBERON:0010538;2.38e-15;1!UBERON:0003661;2.38e-15;1!UBERON:0010890;2.38e-15;1!UBERON:0002471;2.38e-15;1!UBERON:0001383;2.38e-15;1!UBERON:0010758;2.38e-15;1!UBERON:0010707;2.38e-15;1!UBERON:0000978;2.38e-15;1!UBERON:0002103;2.38e-15;1!UBERON:0001665;2.38e-15;1!UBERON:0003823;2.38e-15;1!UBERON:0000154;2.38e-15;1!UBERON:0010709;2.38e-15;1!UBERON:0001242;3.94e-15;4!UBERON:0001262;3.94e-15;4!UBERON:0004786;3.94e-15;4!UBERON:0004808;3.94e-15;4!UBERON:0001277;3.94e-15;4!UBERON:0002107;2.25e-12;19!UBERON:0006925;2.25e-12;19!UBERON:0002423;1.81e-09;25!UBERON:0000485;4.76e-09;7!UBERON:0003929;4.76e-09;7!UBERON:0005090;2.48e-08;2!UBERON:0001630;2.48e-08;2!UBERON:0003350;5.00e-08;8!UBERON:0001473;5.96e-08;8!UBERON:0004536;5.96e-08;8!UBERON:0006558;5.96e-08;8!UBERON:0002365;2.60e-07;31!UBERON:0002330;2.60e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0005418,2.06e-15,1;UBERON:0001389,2.06e-15,1;UBERON:0000026,2.06e-15,1;UBERON:0008784,2.06e-15,1;UBERON:0006058,2.06e-15,1;UBERON:0003663,2.06e-15,1;UBERON:0004256,2.06e-15,1;UBERON:0004708,2.06e-15,1;UBERON:0002101,2.06e-15,1;UBERON:0004709,2.06e-15,1;UBERON:0002529,2.06e-15,1;UBERON:0010538,2.06e-15,1;UBERON:0003661,2.06e-15,1;UBERON:0010890,2.06e-15,1;UBERON:0002471,2.06e-15,1;UBERON:0001383,2.06e-15,1;UBERON:0004357,2.06e-15,1;UBERON:0004347,2.06e-15,1;UBERON:0005420,2.06e-15,1;UBERON:0005732,2.06e-15,1;UBERON:0010758,2.06e-15,1;UBERON:0010707,2.06e-15,1;UBERON:0000978,2.06e-15,1;UBERON:0002103,2.06e-15,1;UBERON:0001665,2.06e-15,1;UBERON:0003823,2.06e-15,1;UBERON:0000154,2.06e-15,1;UBERON:0010709,2.06e-15,1;UBERON:0005733,2.06e-15,1;UBERON:0005730,2.06e-15,1;UBERON:0001242,3.94e-15,4;UBERON:0001262,3.94e-15,4;UBERON:0004786,3.94e-15,4;UBERON:0004808,3.94e-15,4;UBERON:0001277,3.94e-15,4;UBERON:0003929,1.68e-12,54;UBERON:0002107,2.12e-12,19;UBERON:0006925,2.12e-12,19;UBERON:0008836,2.12e-12,19;UBERON:0008835,9.53e-11,22;UBERON:0003894,9.53e-11,22;UBERON:0009854,2.72e-10,23;UBERON:0007499,1.73e-09,25;UBERON:0009497,1.73e-09,25;UBERON:0000015,1.73e-09,25;UBERON:0002423,1.73e-09,25;UBERON:0006235,1.73e-09,25;UBERON:0004161,1.73e-09,25;UBERON:0005172,3.11e-09,54;UBERON:0005173,3.11e-09,54;UBERON:0009856,3.93e-09,26;UBERON:0005090,2.31e-08,2;UBERON:0001630,2.31e-08,2;UBERON:0002417,2.80e-08,60;UBERON:0000916,2.80e-08,60;UBERON:0005911,4.74e-08,82;UBERON:0003350,5.00e-08,8;UBERON:0001473,6.62e-08,8;UBERON:0004536,6.62e-08,8;UBERON:0006558,6.62e-08,8;UBERON:0002365,1.08e-07,31;UBERON:0002330,1.08e-07,31;UBERON:0000485,3.14e-07,9;UBERON:0002368,7.77e-07,35|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0.775250277507987,1.06729878806013,0.33472061276467,0.805658634218294,0,0,0.367663080345869,0,0.0892997282840798,0.44905874525234,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0.2523208508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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:61449964..61449980,+ | |||
|id=chr11:61449964..61449980,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.12e-12!24;CL:0005020!3.34e-11!6;CL:0002138!3.34e-11!6;CL:0005022!3.34e-11!6;CL:0000115!8.13e-08!35;CL:0000181!1.08e-07!12;CL:0000417!1.08e-07!12;CL:0000668!1.08e-07!12;CL:0000414!1.08e-07!12;CL:0000412!1.08e-07!12;CL:0000182!1.08e-07!12;CL:0002618!1.30e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.11e-19;12!CL:0002563;3.94e-15;4!CL:0002138;2.64e-10;6!CL:0002253;2.48e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.92e-19,12;CL:0002563,3.94e-15,4;CL:0000223,1.32e-11,58;CL:0005020,3.04e-10,6;CL:0002138,3.04e-10,6;CL:0005022,3.04e-10,6;CL:0002253,2.67e-08,2;CL:0000066,3.68e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0003104;4.75e-22;31!UBERON:0004161;3.95e-21;11!UBERON:0009497;6.15e-18;13!CL:0005022;2.64e-10;6!UBERON:0001041;6.30e-08;30!CL:0000223;1.93e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;8.31e-10;14!DOID:7;1.80e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,8.70e-10,14;DOID:7,3.80e-09,39;DOID:305,6.76e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0002465!7.97e-09!10;UBERON:0001473!2.81e-08!8;UBERON:0004536!2.81e-08!8;UBERON:0006558!2.81e-08!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0001389;2.38e-15;1!UBERON:0000026;2.38e-15;1!UBERON:0008784;2.38e-15;1!UBERON:0006058;2.38e-15;1!UBERON:0003663;2.38e-15;1!UBERON:0004256;2.38e-15;1!UBERON:0004708;2.38e-15;1!UBERON:0002101;2.38e-15;1!UBERON:0004709;2.38e-15;1!UBERON:0002529;2.38e-15;1!UBERON:0010538;2.38e-15;1!UBERON:0003661;2.38e-15;1!UBERON:0010890;2.38e-15;1!UBERON:0002471;2.38e-15;1!UBERON:0001383;2.38e-15;1!UBERON:0010758;2.38e-15;1!UBERON:0010707;2.38e-15;1!UBERON:0000978;2.38e-15;1!UBERON:0002103;2.38e-15;1!UBERON:0001665;2.38e-15;1!UBERON:0003823;2.38e-15;1!UBERON:0000154;2.38e-15;1!UBERON:0010709;2.38e-15;1!UBERON:0001242;3.94e-15;4!UBERON:0001262;3.94e-15;4!UBERON:0004786;3.94e-15;4!UBERON:0004808;3.94e-15;4!UBERON:0001277;3.94e-15;4!UBERON:0002107;2.25e-12;19!UBERON:0006925;2.25e-12;19!UBERON:0002423;1.81e-09;25!UBERON:0000485;4.76e-09;7!UBERON:0003929;4.76e-09;7!UBERON:0005090;2.48e-08;2!UBERON:0001630;2.48e-08;2!UBERON:0003350;5.00e-08;8!UBERON:0001473;5.96e-08;8!UBERON:0004536;5.96e-08;8!UBERON:0006558;5.96e-08;8!UBERON:0002365;2.60e-07;31!UBERON:0002330;2.60e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005418,2.06e-15,1;UBERON:0001389,2.06e-15,1;UBERON:0000026,2.06e-15,1;UBERON:0008784,2.06e-15,1;UBERON:0006058,2.06e-15,1;UBERON:0003663,2.06e-15,1;UBERON:0004256,2.06e-15,1;UBERON:0004708,2.06e-15,1;UBERON:0002101,2.06e-15,1;UBERON:0004709,2.06e-15,1;UBERON:0002529,2.06e-15,1;UBERON:0010538,2.06e-15,1;UBERON:0003661,2.06e-15,1;UBERON:0010890,2.06e-15,1;UBERON:0002471,2.06e-15,1;UBERON:0001383,2.06e-15,1;UBERON:0004357,2.06e-15,1;UBERON:0004347,2.06e-15,1;UBERON:0005420,2.06e-15,1;UBERON:0005732,2.06e-15,1;UBERON:0010758,2.06e-15,1;UBERON:0010707,2.06e-15,1;UBERON:0000978,2.06e-15,1;UBERON:0002103,2.06e-15,1;UBERON:0001665,2.06e-15,1;UBERON:0003823,2.06e-15,1;UBERON:0000154,2.06e-15,1;UBERON:0010709,2.06e-15,1;UBERON:0005733,2.06e-15,1;UBERON:0005730,2.06e-15,1;UBERON:0001242,3.94e-15,4;UBERON:0001262,3.94e-15,4;UBERON:0004786,3.94e-15,4;UBERON:0004808,3.94e-15,4;UBERON:0001277,3.94e-15,4;UBERON:0003929,1.68e-12,54;UBERON:0002107,2.12e-12,19;UBERON:0006925,2.12e-12,19;UBERON:0008836,2.12e-12,19;UBERON:0008835,9.53e-11,22;UBERON:0003894,9.53e-11,22;UBERON:0009854,2.72e-10,23;UBERON:0007499,1.73e-09,25;UBERON:0009497,1.73e-09,25;UBERON:0000015,1.73e-09,25;UBERON:0002423,1.73e-09,25;UBERON:0006235,1.73e-09,25;UBERON:0004161,1.73e-09,25;UBERON:0005172,3.11e-09,54;UBERON:0005173,3.11e-09,54;UBERON:0009856,3.93e-09,26;UBERON:0005090,2.31e-08,2;UBERON:0001630,2.31e-08,2;UBERON:0002417,2.80e-08,60;UBERON:0000916,2.80e-08,60;UBERON:0005911,4.74e-08,82;UBERON:0003350,5.00e-08,8;UBERON:0001473,6.62e-08,8;UBERON:0004536,6.62e-08,8;UBERON:0006558,6.62e-08,8;UBERON:0002365,1.08e-07,31;UBERON:0002330,1.08e-07,31;UBERON:0000485,3.14e-07,9;UBERON:0002368,7.77e-07,35 | |||
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|short_description=p@chr11:61449964..61449980,+ | |||
}} |
Revision as of 18:24, 10 September 2013
Short description: | p@chr11:61449964..61449980, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:61449964..61449980, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.92e-19 | 12 |
intestinal epithelial cell | 3.94e-15 | 4 |
endodermal cell | 1.32e-11 | 58 |
lymphangioblast | 3.04e-10 | 6 |
endothelial cell of lymphatic vessel | 3.04e-10 | 6 |
vascular lymphangioblast | 3.04e-10 | 6 |
epithelial cell of large intestine | 2.67e-08 | 2 |
epithelial cell | 3.68e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 8.70e-10 | 14 |
disease of anatomical entity | 3.80e-09 | 39 |
carcinoma | 6.76e-08 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.